BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03000.1
Length=2816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490262 jgi|Araly1|490262|fgenesh2_kg.6__3396__AT4G03000.1 4178 0.0
Ahg919005 jgi|Araly1|919005|scaffold_100286.1 800 0.0
> Ahg490262 jgi|Araly1|490262|fgenesh2_kg.6__3396__AT4G03000.1
Length=2762
Score = 4178 bits (2262), Expect = 0.0
Identities = 2627/2798 (94%), Gaps = 46/2798 (2%)
Strand=Plus/Plus
Query 25 CTTCGTCTTGTAGCCACGCACTTGTTCTCTTTATCACAGTGCCCTCTCGCTCTCTGCAAC 84
|||| |||| ||||||||||||||||||||||||||||||| | | | |||||||
Sbjct 1 CTTCATCTTCTAGCCACGCACTTGTTCTCTTTATCACAGTG--C-C-C-CTCTCTG---T 52
Query 85 AACACTCTTAatatatatatatatatatTCATCAAT--C-C-CTATCTCTCATCGAATTC 140
||||||||| || ||| || ||||||||||||| || | | || |||||| ||| ||||
Sbjct 53 AACACTCTTTATTTAT-TA-ATATATATTCATCGATCCCTCTCTCTCTCTCTTCG-ATTC 109
Query 141 TCTTCCGATCGTCtttttttCTTCCCGCGGTTTCTTGCGTTTCCGGGAATTATTGCTTAA 200
||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 110 TCTTCCGATCGTC---TTTT-TTCCCGCGGTTTCTTGCGTTCCCGGGAATTGTTGCTTAA 165
Query 201 TGGTTGAGAAGCAAGAAGAAATGAATGAGTTTGGTGCTGTCAATGGTGGGAAAGTGGGGA 260
|||| |||||||||||||||||||||||| ||||||||| |||||||| |||||||| |
Sbjct 166 TGGTCCAGAAGCAAGAAGAAATGAATGAGTGTGGTGCTGTAAATGGTGGCAAAGTGGGAA 225
Query 261 CGTCTTCTTCAGTGTCACCACCGCAAGATAAAGGAAGGAAGAACAAGAGAAAGTTAGCTG 320
|| || | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 226 CG------TC--T-TCACCACCGCAAGAGAAAGGAAGGAAGAACAAGAGAAAGTTAGCTG 276
Query 321 ATCCTTCTCCACAAAATGCTGCTTCTTTGACTGAGTTCCCTCGATATGAGTTACATTCGT 380
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 277 ATCCTTCTCCACAAAATGCTGCTTCTTTGACTGAATTCCCTCGATATGAGTTACATTCAC 336
Query 381 TCAAATCTCAAAGCCCTTTGTGTGAAAATGACTCCAACGGGCAGCTGAAAGCCGAAGAGT 440
|||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 337 TCAAATCTCAAAGCACTTTGTGTGAAAATGACTCGAACGGGCAGCTGAAAGCGGAAGAGT 396
Query 441 CTGATTCTGTGGGATGGGATGATCCGTTTGCTTGTCACCTTGAAGGACTATTATCGTCAA 500
|||| || || |||||||||||||| ||||||||||| || ||| ||| ||||| ||||
Sbjct 397 CTGACTCCGTAGGATGGGATGATCCCTTTGCTTGTCAACTCGAACAACTTTTATCATCAA 456
Query 501 ATTTGCTCACGCTCTTTCGTAGTGCAATGAATCAGATTATGGATTGTGGGTATAGTGAGG 560
|||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 457 ATTTGCTCACCCTCTTCCGTAGTGCAATGAATCAGATTATGGATTGTGGGTTTAGTGAGG 516
Query 561 ATGTTGTTCTCAAAGCTATTTCAAGCAGTAGGTTCTACTGTGGTGGAACTGATCTCGTGT 620
|||||||||||||||||||||||||||||||| |||||| ||| |||| ||||||||| |
Sbjct 517 ATGTTGTTCTCAAAGCTATTTCAAGCAGTAGGCTCTACTCTGGGGGAAATGATCTCGTCT 576
Query 621 CTAATATTGTTAACGATACCTTGAGTTTTTTGAAGAGTGGCAAAAAA-GTTGCTGGTTCC 679
|||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 577 CTAACATTGTTAATGATACCTTGAGTTTTTTGAAGAGTGG-AAAAAATGTTGCTGGTTCG 635
Query 680 AGAGACTATGTGTTTGAGGATTTGCAACAGCTTGTTGCGTATAGTTTGGTAGAGAAGATA 739
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 636 AGAGACTATGTGTTTGAGGATTTGCAACAGCTTGTTGCCTATACTTTGGTAGAGAAGATA 695
Query 740 AGTCTTGTTAGGGAGGTTAGACCATCGCTTTCAACGGACGAAGCTATGTGGAGGCTGTTG 799
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 696 AGTCTTGTTAGGGAGGTTAGACCATCGCTTTCAACAGTCGAAGCTATGTGGAGGCTGTTG 755
Query 800 ATTTGTGACTTGAATGTTTTGAAAGCTTTTGAAGTGGACGCAGATGGATTGGAGGGCTCT 859
|| |||||||||||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 756 ATGTGTGACTTGAATGTTTTGCAAGCTTTTGAAGTGGAAGGAGATGGATTGGAGGGCTCT 815
Query 860 TCGGTTTCCAATGCTAGTAAATCATCGGAATCTCCAGTTGCTGAGTGTAATCCTCCAAAA 919
|||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 816 TCGGGTTCCAATGCAAGTAAATCATCGGAATCTCCAGTTTCTGAGTGTAATCCTTCAAAA 875
Query 920 TCCAGTGACGCAGATAACCCAAAGGC-TCCAGTATCCAATACTCAAAGCAAGCAGAGTGA 978
|| |||| | | |||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 876 TCTAGTGGCTCGGATAACCCAAAGGCGCCCA-TATCCAATACTCAAAGCAATCAGAGTGA 934
Query 979 GCCAGTCAAATTTGGGAACTTCGCAAATGTAAACAACTCCAAAAATCCTCATGCTAGTGG 1038
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 935 GCCAGTCAAATTTGGGAACTTCCCAAATGTGAACAACTCCAAAAATCCTCATGCTAGTGG 994
Query 1039 AGCAACACCTGGAAAAGAGGTATTTTCTGTTTCCACTGCTTCTGGTGAAGGCACTAAAAG 1098
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGCAACCCCTGGAAAAGAGGTATTTTCTGTTTCCACTGCTTCTGGTGAAGGCACTAAAAG 1054
Query 1099 TGCATCCCTGACTTCTGTTTCTGATGAAAAATTAGTATCTTGTCGAAAAGGCCGCACCAA 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TGCATCCCTGACTTCTGTTTCTGATGAAAAATTAGTATCTTGTCGAAAAGGCCGCACCAA 1114
Query 1159 AAAAGAAATGGCCATGCTACGGCAGAAATCATGCGTGGAGAAGATTAGAACTTATAGCAA 1218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1115 AAAAGAAATGGCCATGCTACGGCAGAAATCATGTGTGGAGAAGATTAGAACTTATAGCAA 1174
Query 1219 AGGCGGTGGCTATAAGACGGCAAAGTTTGGTGGTTTCCTTGTGGAGAAAAGAGGCAAATC 1278
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1175 AGGTGGTGGCTATAAGACGGCAAAGTTTGGTGGTTTCCTTGTGGAGAAAAGAAGCAAAGC 1234
Query 1279 AGCTTCTGATTTACTTTCCGCACAGGCAAGAAATTCTTCATCAAAGATTACAACAGAGGT 1338
|||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 1235 AGCTTCGGATTTACTGTCCGCACAGGCAAGAAATTCTTCATCGAAGATTACGACAGACGT 1294
Query 1339 TATGAAAATTCCTTTAGCTGAGAGTAGCAGCACTCTCTCAAACAGTACTAAGTCAGATTC 1398
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1295 TATGAAAATTCCTTTAGCTGAGAGTAGCAGCACTCTCTCAAACAATACTAAGTCAGATTC 1354
Query 1399 GCCTGCATTAGATGTTAAGGAGCATGTTACTGCATTACCTGCTAATAATGCTCCAGCACC 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 GCCTGCATTAGATGTTAAGGAGCATGTTACTGCATTACCTGCTAATAATGCTCCAGCACC 1414
Query 1459 AGTAGCTTCAGAAAAGAAGTCCGGTTCTGAGCCTGAAGAAAAGCCTTCTGTGTCTACGAA 1518
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct 1415 AGTAGCTTCAGAAAAGAAGTCCGGTTCCGAGCCTGAAGAAAAGGCTTCTGTGTCTAC-AA 1473
Query 1519 A-CCAGCACCAGATTACTATGCTGCAATCCCATACGATGCAACTCTGGGAATATATATTC 1577
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1474 AGCCAGCACCAGATTACTATGCTGCAATCCCATACGATGCATCTCTGGGAATATATGTTC 1533
Query 1578 CCCGGAATAAAAGAGATGAATTGATTTTAAAGCTAGTTCCCCGAATGAAAGATCTGCAGA 1637
|||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1534 CCCGAAATAAAGGAGATGAATTAATTTTAAAGCTAGTTCCCCGAATGAAAGATCTGCAGA 1593
Query 1638 AAGAATTGCAGGATTGGACTGACTGGGCTAATCAGAAAGTAAAACAGGCTACTGTTAGAC 1697
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1594 AAGAATTGCAGGATTGGACTGACTGGGCTAATCAGAAAGTAAAGCAGGCTACTGTTAGAC 1653
Query 1698 TTCTTAAGGACCAACCAGAGCTTAAGGCACTaagaaaagagaaagaagaggcagaagagt 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 TTCTTAAGGACCAACCAGAGCTTAAGGCACTAAGAAAAGAGAAAGAAGAGGCAGAAGAGT 1713
Query 1758 tcagaaaagagaagcagttattggaagaaaaCACTATTAAAAGGAGATCTGAAATGGAGT 1817
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1714 TCAGAAAAGAGAAGCAGTTATTGGAAGAAAACACTATGAAAAGGAGATCTGAAATGGAGT 1773
Query 1818 TGGCCTTGAATAACGCAACCAACCAGCTTGAGAGAACTAACAACACAATTCGCAGGCTCG 1877
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1774 TGGCCTTGAATAACGCAACCAACCAGCTTGAAAGAACTAACAACATAATTCGCAGGCTCG 1833
Query 1878 AGCTGGAACAATCTCTGTTAAAGAGAGAGAGGGAAGCTGCTAATATAAGAGCTTCCGAGT 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1834 AGCTGGAACAATCTCTGTTAAAGAGAGAGAGGGAAGCTGCTAATATAAGAGCTTCTGAGT 1893
Query 1938 CCGCTGAGAGCTGTAGAGAAGCAAAGGAGAGAGTGCAAAGATTGTTGAAGAATTCTCAAT 1997
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1894 CCGCTGAGAGCTGTAGAGAAGCAAAGGAGAGAGTGCAAATATTGTTGAAGAATGCTCAGT 1953
Query 1998 CGTGGGAAGGGCaaaaaaaTTTACTGCAGGAAGAGCTCAAGAGTCAAAGAGACAAGGTGG 2057
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1954 CGTGGGAAGGGCAAAAGGTTTTGTTGCAGGAAGAGCTCAAGAGTCAAAGAGACAAGGTGG 2013
Query 2058 CAGGGCTGCAGCAAGAAGTTGCCAAGGCAAAAACCCGCCAAAACCAAATTGAGGCTACTT 2117
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2014 CAGAGCTGCAGCAAGAAGTTGCCAAGGCAAAAACCCGACAAAACCAAATTGAGGCTACTT 2073
Query 2118 GGAAACAAGAAAAGTCAGCGACGGGGAAACTCACTGCTCAAGCAGCTGCATTAAAGAAAG 2177
|||||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 2074 GGAAACAAGAAAAGGCAGCGACGGGGAAACTCACTACTCAAGCGGCTGCACTAAAGAAAG 2133
Query 2178 AGAGAGGGAAACTGGAAGAACTCGGAAAAGCAGAAGAAGAGCGGATCAAAACAAAAGCAG 2237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2134 AGAGAGGGAAACTGGAAGAACTCGGAAAATCAGAAGAAGAGCGGATCAAAACAAAAGCAG 2193
Query 2238 AGAACGATGTGAAATACTACATTGAGAACATCAAAAGACTTGACACTGAGATCTCAAAGC 2297
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2194 AGAACGACGTGAAATACTACATTGAGAACATCAAAAGACTTGACACCGAGATCTCAAAGC 2253
Query 2298 TGAAACTCAAGTCAGACAGCTTGAAGATAGCTGCTTTGAAAAAAGGCATAGACGGAAACA 2357
| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 2254 TAAAACTCAAGTCAGACTGCTTGAAGATAGCTGCTTTGAAAAAAGGCGTAGACGGTAGCA 2313
Query 2358 ATGACGGTAACAAGAGTGGAATGAATCATACCACCAACACAAAGGCAAAC-TCGATGGCA 2416
||||| || ||| ||||||||||||||||||| ||||||||||||| | |||||||
Sbjct 2314 ATGAC---AA---GAGCGGAATGAATCATACCACCACCACAAAGGCAAACCT-GATGGCA 2366
Query 2417 TCAGCAAAAGTATGGGAGAATAATCAGGGGGCAGAGTCGAAAATCAAAAGAGAGAGGGAA 2476
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2367 GCAACAAAAGTATGGGAGAATAATCACGGGGCAGAGTCGAAAATCAAAAGAGAGAGGGAA 2426
Query 2477 TGTGTGATGTGTTTGTCTGAAGAGATGAGTGTGATATTCTTGCCTTGTGCCCATCAGGTT 2536
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2427 TGTGTGATGTGTTTGTCTGAAGAGATGAGTGTGATTTTCTTGCCTTGTGCCCATCAGGTT 2486
Query 2537 CTTTGCTCTAAATGTAACCAGCTTCATGAGAAGGAAGCCATGGAAGATTGCCCGTCTTGT 2596
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2487 CTTTGCTCTAAATGTAACCAGCTTCATGAGAAGGAAGCCATGGAGGATTGTCCGTCTTGT 2546
Query 2597 CGAGCCAAAATCCAGAGGAGGATTCAGGCTCGTTTTGCTCGC--GGGTAAAAGCGCTTGG 2654
|| |||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||
Sbjct 2547 CGGGCCAAAATCCAGAGGAGGATTCAGGCTCGTTT--CTCCCATGGGTAAAAGCGCTCGG 2604
Query 2655 GTTTTGAATCAATATGGCAATGAAGGTTTTGCTTTGGTTTTATCTCTTTGGACTGCTCTA 2714
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2605 GTTTTGAATCAATATGGCAATGAAGGTTTTGCTTTGGTTTTATATCTTTGGACTGCTCTA 2664
Query 2715 TTTACATCTAAATTATACACAGCTTGTAAAGAGTGACTTCACAATTTGCTCATTTCTATA 2774
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2665 TTTACATCTAAATTACACACATCTTGTAAAGAGTGACTTCACAATTTGCTCATTTCTATA 2724
Query 2775 TATCCCTCAATAATAAATGGAAGAAGACTTTCCTAAAC 2812
| |||||||||||||||||||||||||| |||||||||
Sbjct 2725 TTTCCCTCAATAATAAATGGAAGAAGACATTCCTAAAC 2762
> Ahg919005 jgi|Araly1|919005|scaffold_100286.1
Length=5659
Score = 800 bits (433), Expect = 0.0
Identities = 728/868 (84%), Gaps = 30/868 (3%)
Strand=Plus/Plus
Query 1462 AGCTTCAGAAAAGAAGTCCGGTTCTGAGCCTGAAGAAAAGCCTTCTGTGTCTACGAAA-C 1520
|||||||||||||||||| |||||| || ||||||||||| | ||||||||| | ||| |
Sbjct 1409 AGCTTCAGAAAAGAAGTCTGGTTCTAAGTCTGAAGAAAAGGCATCTGTGTCTGC-AAAGC 1467
Query 1521 CAGCACCAGATTACTATGCTGCAATCCCATACGATGCAACTCTGGGAATATATATTCCCC 1580
|||||||||||||||||||| |||||||| |||||| ||||||| |||||| ||||||
Sbjct 1468 TAGCACCAGATTACTATGCTGGGATCCCATATGATGCAGCTCTGGGTATATATGTTCCCC 1527
Query 1581 GGAATAA-AAGAGATGAATTGATTTTAAAGCTAGTTCCCCGAATGAAAGATCTGCAGAAA 1639
|| |||| || ||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 1528 GGGATAAGAA-AGATGAATTGATTCTAAAGCTAGTTCCCCGAGTGACTGATCTGCAGAAT 1586
Query 1640 GAATTGCAGGAT-TGGACTGACTGGGCTAATCAGAAAGTAAAACAGGCTACTGTTAGACT 1698
||| |||||| | |||||||||||||||||||||||||||||| | || |||| ||||||
Sbjct 1587 GAACTGCAGG-TCTGGACTGACTGGGCTAATCAGAAAGTAAAAGAAGCAACTGGTAGACT 1645
Query 1699 TCTTAAGGACCAACCAGAGCTTAAGGCACTaagaaaagagaaagaagaggcagaagagt- 1757
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1646 ACTTAAGGACCAACCAGAGCTTAAGGCACTAAGAAAAGAGAGAGAAGAGGCAGAACAGTA 1705
Query 1758 tcagaaaagagaagcagttattggaagaaaaCACTATTAAAAGGAGATCTGAAATGGAGT 1817
| | |||||||||||||||||||||||||||||||| |||||| |||||| ||||| |
Sbjct 1706 TAA-AAAAGAGAAGCAGTTATTGGAAGAAAACACTAGGAAAAGGCTATCTGAGATGGATT 1764
Query 1818 TGGCCTTGAATAACGCAACCAACCAGCTTGAGAGAA--CTAACAACACAATTCGCAGGCT 1875
| || ||||| || || |||| |||| ||| || || || |||| || |||||||||
Sbjct 1765 TTGCGTTGAAAAATGCGACCAGCCAG-TTG-GAAAAAGCTCACAATACTGCTCGCAGGCT 1822
Query 1876 CGAGCTGGAACAATCTCTGTTAAAGAGAGAGAGGGAAGCTGCTAATATAAGAGCT-TCCG 1934
||||||||||||||| | | |||| ||||| |||||||||||| |||| |||| | |
Sbjct 1823 TGAGCTGGAACAATCTTTACTGAAGAAAGAGATGGAAGCTGCTAAGATAAAAGCTGTT-G 1881
Query 1935 AGTCCGCTGAGAGCTGTAGAGAAGCAAAGGAGAGAGTGCAAAGATTGTTGAA-GAATTCT 1993
|||| ||||||||||||||||||||||| ||||||| |||||||| ||||| || | ||
Sbjct 1882 AGTCTGCTGAGAGCTGTAGAGAAGCAAAAGAGAGAGGGCAAAGATCATTGAAAGA-TACT 1940
Query 1994 CAATCGTGGGAAGGGCaaaaaaaTT-TACTGCAGGAAGAGCTCAAGAGTCAAAGAGACAA 2052
|| ||||||||||||||||||| || | ||||||||||||||||| ||||||| || ||
Sbjct 1941 CACTCGTGGGAAGGGCAAAAAA-TTATGTTGCAGGAAGAGCTCAAGGGTCAAAGGGAAAA 1999
Query 2053 GGTGGCAGGGCTGCAGCAAGAAGTTGCCAAGGCAAAAACCCGCCAAAACCAAATTGAGGC 2112
|| |||| ||| ||| |||||||| |||| ||||||| ||||| || ||||| |||||
Sbjct 2000 GGCAGCAGTGCTACAGAAAGAAGTTACCAAAGCAAAAAATCGCCAGAATCAAATCGAGGC 2059
Query 2113 TACTTGGAAACAAGAAA-AGTCAGCGACGGGGAAACTCA-CTGCTCAAGCAGC-T-GCAT 2168
| ||| ||| ||||||| | |||| | |||||||||| | ||||| ||| | | | ||
Sbjct 2060 TGCTTTGAAGCAAGAAAGAA-CAGCCAAAGGGAAACTCAGC-GCTCAGGCATCATTG-AT 2116
Query 2169 TAAAGAAAGAGAGAG-GGAAACTGGAAGAACTCGGAAAAGCAGAAGAAGAGCGGATCAAA 2227
||||||||| ||| |||| || |||| ||| ||||||| ||||||||||||||||||
Sbjct 2117 -AAAGAAAGAAAGAAAGGAA-CTTGAAGCACTTGGAAAAGTGGAAGAAGAGCGGATCAAA 2174
Query 2228 ACAAAAGCAGAGAAC-GATGTGAAATACTACATTGAGAACATCAAAAGACTTGACACTGA 2286
|||||||| ||| || ||||||||||||| || |||||||| |||||||| | ||
Sbjct 2175 GGGAAAGCAGA-AACCGACGTGAAATACTACAAAGATAACATCAAGAGACTTGAGAGAGA 2233
Query 2287 GATCTCAAAGCTGAAACTCAAGTCAGAC 2314
||||||| |||||||||| || ||||||
Sbjct 2234 GATCTCAGAGCTGAAACTAAAATCAGAC 2261
Score = 673 bits (364), Expect = 0.0
Identities = 941/1209 (78%), Gaps = 81/1209 (7%)
Strand=Plus/Plus
Query 200 ATGGTTGAGAAGCAAGAAGAAATGAATGAGTTTGGTGCTGTCAATGGTGGGAAAGTGGGG 259
|||||| ||||||||||||||||||||| | || ||| | |||||| || ||||| |
Sbjct 27 ATGGTTCAGAAGCAAGAAGAAATGAATG-G-TT-GTGGTCTCAATGTTGACAAAGT--AG 81
Query 260 ACGTCTTCTTCAGTGTCACCACCGCAAGATAAAGGAAGGAAGAACAAGAGAAAGTTAGCT 319
| | ||| | ||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct 82 AAGCCTT-TACAGTGTCACCA---CAGGAAAAAGGAAGGAAAAACAAGAGAAAGTTAGCT 137
Query 320 GATCCTTCTCCACAAAATGCTGCTTCTTTGACTGAGTTCCCTCGATATGAGTTACATTCG 379
|||||||||| || |||||||||||| | ||||| ||||||| ||||||||||| |||
Sbjct 138 GATCCTTCTCAACCAAATGCTGCTTCCCTCACTGAATTCCCTCCATATGAGTTACCCTCG 197
Query 380 TTCAAATCTCA-AAGCCCTTTGTGTG-AAA---AT-GACTCC--AA----CGGG-CAGCT 426
|| ||| |||| || || |||| | | ||| || || | || | |||||
Sbjct 198 TTGAAACCTCAGAA-CCATTTGAGCGGAAATGGATTGATTGGGGAAGTTTCTAATCAGCT 256
Query 427 GAAAGCCGAAGAGTCTGATTCTGTGGGATGGGATGATCCGTTTGCTTGTCACCTTGAAGG 486
| ||| ||||| ||||| ||||| | ||||||||| || ||||| ||||| |||||||
Sbjct 257 GCAAGTTGAAGACTCTGAATCTGTCGAATGGGATGACCCATTTGCCTGTCAACTTGAAGA 316
Query 487 ACTATTATCGTCAAATTTGCTCACGCTCTTTCGTAGTGCAATGAATCAGATTATGGATTG 546
| | || || |||||||||||||||||||| | || ||||||||| || |||| || ||
Sbjct 317 ATTGTTGTCATCAAATTTGCTCACGCTCTTCCTTAATGCAATGAAGGAGCTTATTGACTG 376
Query 547 TGGGTATAGTGAGGATGTTGTTCTCAAAGCTATTTCAAGCAGTAGGTTCTACTGTGGTGG 606
||| || | || || | ||||| |||||||| ||| || ||||| |||||||||| ||
Sbjct 377 TGGCTACACCGATGACGAAGTTCTGAAAGCTATATCAGGCTGTAGGCTCTACTGTGGAGG 436
Query 607 -AACTGATCTCGTGTCTAATATTGTTAACGATACCTTGAGTTTTTTGAAGAGT-GGCAAA 664
|| | |||| |||| || ||||| || | ||||||||| || | ||| || || |||
Sbjct 437 CAA-TAATCTTATGTCAAACATTGTCAATAACACCTTGAGTGTTCTCAAG-GTTGG-AAA 493
Query 665 A-AAGTTGCTGGTTCCAGAGACTATGTGTTTGAGGATTTGCAACAGCTTGTTGCGTATA- 722
||| ||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 494 CGAAGGTGCTGGTTCAAGAGACTATGTGTTTGAGGATTTACAACAGCTTGTTTCGTATAC 553
Query 723 GTTTGGTAGAGAA-GATAAGTCTTGTTAGGGAGGTTAGACCATCGCTTTCAACGGACGAA 781
||| |||||| || | ||||||| |||| ||||||||| || || || ||||| | |||
Sbjct 554 GTT-GGTAGA-AATGGTAAGTCTGGTTAAGGAGGTTAGGCCGTCCCTATCAACAGTTGAA 611
Query 782 GCTATGTGGAGGCTGTTGATTTGTGACTTGAATGTTTTGAAAGCTTTTGAAGTGGACG-C 840
|||||||||||||| ||||| || ||||||||||| ||| |||| |||||||| || | |
Sbjct 612 GCTATGTGGAGGCTTTTGATGTGCGACTTGAATGTCTTGCAAGCCTTTGAAGTTGAAGGC 671
Query 841 AGATGGATTGGAGGGCTCTTCG-GTT--TCCAATGCTAGTAAATCATCGGAATCTCCAGT 897
|||||||||| | | | | || || || | | || | | || || |||||| |
Sbjct 672 -GATGGATTGGTGAG-T-T-CGAGTAAATC-A-T-CT-G-AT-TC--CG-AATCTCTTGG 718
Query 898 TGCTGAGTGTAATCCTCCAAAATCCAGTGACGCAGATAACCCAAAGGCTCCAGTATCCAA 957
|||||| | |||||||||||| || |||||| |||||||||||||| ||||| ||| ||
Sbjct 719 TGCTGAATCTAATCCTCCAAACTCTAGTGACCCAGATAACCCAAAGCCTCCACAATCTAA 778
Query 958 TACTCAAAGCAAGCAGAGTGAGCCAGTCAAATTTGGGAACTTCGCAAATGTAAAC-AACT 1016
| ||||| |||| | || ||||||| |||| ||||| |||||| ||||| | | | ||||
Sbjct 779 TCCTCAAGGCAATCGGAATGAGCCACTCAAGTTTGGAAACTTCCCAAAT-TCACCCAACT 837
Query 1017 CCAAAAATCCTCA-TGCTAGTGGAGCAACACCTGGAAAAGAGGTATTTTCTGTTTCCACT 1075
||||||| |||| | |||||||| ||||||| |||||||| |||| || | | |||
Sbjct 838 CCAAAAAAACTCAGT-CTAGTGGAACAACACCGGGAAAAGAAGTATGCTCAGGTAGCACA 896
Query 1076 GCTTCTGGTGAAGGCACTAA-AAGTGCATCCCTGACTTCT-GTTTCTGATGAAAAATTAG 1133
| |||| || |||||| | | |||| |||| | ||| || || |||||||||||| | |
Sbjct 897 GTTTCTTGTCAAGGCA-TGAGAAGTACATCGTTTACT-CTAGTCTCTGATGAAAAAATGG 954
Query 1134 TATCTTGTCGAAAAGGCCGCACCAAAAAAGAAATGGCCATGCTACGGCAGAAATCATGCG 1193
||||||||||||||||||| || |||||||| || || ||||| ||||| |||||||| |
Sbjct 955 TATCTTGTCGAAAAGGCCGTACTAAAAAAGAGATAGCTATGCTTCGGCAAAAATCATGTG 1014
Query 1194 TGGAGAAGATTAGAACTTATAGCAAAGGCGGTGGCTATAAGACGGCAAAGTTTG-----G 1248
|||| || ||||| ||||| ||||||||| |||| |||||| |||||||||||| |
Sbjct 1015 TGGAAAAAATTAGGACTTACAGCAAAGGCAGTGGATATAAGGCGGCAAAGTTTGCATCAG 1074
Query 1249 T-GGT---TTCCTTGTGGAGAAAAGAGGCAAATCAGCTTCTGATTTACTTTCCGCACAGG 1304
| || |||||| | |||||| ||| ||||||| ||||||| | ||| | ||
Sbjct 1075 TTGGCAGCTTCCTTTTAGAGAAACGAGTCAAATCATCTTCTGA---A-TTT--GT---GG 1125
Query 1305 CAAGAAATTCTTCATCAAAGATTACAACAGAGGTT--A-TGAAAATTCCTTTAGCTGAG- 1360
||| |||||||||| | ||||| ||| ||||| || | ||||| || | |||||||||
Sbjct 1126 CAAAAAATTCTTCACCGAAGATAACAGCAGAGATTGGAGTGAAAGTTTCATTAGCTGAGG 1185
Query 1361 AGTAGCAGC 1369
| |||||||
Sbjct 1186 A-TAGCAGC 1193
Score = 185 bits (100), Expect = 1e-45
Identities = 154/180 (86%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 2454 CGAAAATCAAAAGAGAGAGGGAATGTGTGATGTGTTTGTCTGAAGAGATGAGTGTGATAT 2513
||||| | |||||||| || |||||||||||||| ||||| |||||||||||||||||||
Sbjct 2335 CGAAAGTGAAAAGAGAAAGAGAATGTGTGATGTGCTTGTCCGAAGAGATGAGTGTGATAT 2394
Query 2514 TCTTGCCTTGTGCCCATCAGGTTCTTTGC-TCTAAATGTAACCAGCTTCATGAGAAGGAA 2572
||||||||||||| || || ||||||||| | |||||| || |||||||| ||||| |||
Sbjct 2395 TCTTGCCTTGTGCTCACCAAGTTCTTTGCAT-TAAATGCAATCAGCTTCACGAGAAAGAA 2453
Query 2573 GCCATGGAAG-ATTGCCCGTCTTGTCGAGCCAAAATCCAGAGGAGGATTCAGGCTCGTTT 2631
| ||| | | |||| ||||||||||| | | |||||||||||||||||| ||||||||
Sbjct 2454 GGAATG-ATGGATTGTCCGTCTTGTCGTGGGACAATCCAGAGGAGGATTCAAGCTCGTTT 2512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106271783550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5