BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03010.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943413 jgi|Araly1|943413|scaffold_603957.1 1818 0.0
Ahg470318 jgi|Araly1|470318|fgenesh2_kg.1__272__AT1G03440.1 1059 0.0
> Ahg943413 jgi|Araly1|943413|scaffold_603957.1
Length=1230
Score = 1818 bits (984), Expect = 0.0
Identities = 1121/1189 (94%), Gaps = 2/1189 (0%)
Strand=Plus/Plus
Query 1 ATGAGATTTGCTACTCTGTTTTCGGTTTTGCTGCTTCTTCTTCGATTCGGTTTAATCGTG 60
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 23 ATGAAATTTGCTACTCTGTTTTGGGTTTTGCTGCTTCTTCTTCGATTCGGTTTATTCGTG 82
Query 61 GAATCGATCATCGTCCCAGTTGATTTCTTGGCTCTGCAAGCGATTCGTAAATCACTCGAT 120
||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 83 AAATCGATCATCGTACCAGTTGATTTCTTGGCTCTACAAGCTATTCGTAAATCGCTCGAT 142
Query 121 GATTTGCCAGGTTCCAATTTCTTCGATTCATGGGATTTCACCTCTGATCCTTGTAACTTC 180
||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 143 GATTTACCAGGTTCAAATTTCTTCGATTCATGGGATTTTACCTCTGACCCTTGTAACTTC 202
Query 181 GCAGGAGTTTACTGTGACGATGATAAAGTAACCGCGCTTAACCTCGGTGATCCAAGAGCC 240
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 203 GCCGGAGTTTACTGTGACGGTGATAAAGTAACCGCGCTTAACCTCGGTGATCCAAGAGCC 262
Query 241 GGTTCACCCGGTTTATCTGGTCGGATTGACCCGGCTATTGGAAAACTCTCTGCTTTAACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GGTTCACCCGGTTTATCTGGTCGGATTGACCCGGCTATTGGAAAACTCTCTGCTTTAACG 322
Query 301 GAGCTCTCTATCGTCCCGGGTCGGATCATGGGTTCGTTACCGCATACAATCTCACAGTCA 360
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 323 GAGCTCTCGATCGTACCGGGTCGGATCATGGGTTCGTTACCGCATACGATCTCGCAGTCA 382
Query 361 AAGAATCTTCGATTTCTCGCAATCAGTCGGAATTT-CATCTCCGGTGAGATTCCAGCGAG 419
||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 383 AAGAATCTTCGATTTCTCGCAATCAGTCGGAATTTTC-TCTCCGGTGAGATTCCGGCGAG 441
Query 420 TCTAAGCGAGCTTCGGGGACTCAAAACGCTTGATTTGAGCTATAATCAGCTAACCGGGTC 479
||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 442 TCTCGGCGAGCTTCGGAGACTCAAAACACTTGATCTGAGCTATAATCAGCTAACCGGGTC 501
Query 480 GATCCCTCCGTCAATCGGATCCTTACCGGAGCTATCCAATCTGATTCTATGTCACAATCA 539
||| |||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 502 GATTCCTCCGCCAATCGGGTACTTACCGGAGTTATCCAATCTGATTCTATGTCACAATCA 561
Query 540 CTTGAACGGATCAATTCCTCAATTCCTCTCACAATCCTTAACCCGAATCGATCTCAAGCG 599
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||
Sbjct 562 CTTGAACGGATCAATTCCTCAATTCCTCTCACAAAGCTTAACACGAATCGATCTCAAACG 621
Query 600 CAACAATCTCACCGGTATAATTTCTCTGACGTCTCTTCCGCCGTCGTTACAATATCTCTC 659
||| ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 622 CAATAATCTCACCGGCATAATCTCTCCGACGTCTCTTCCGCCGTCGTTACAATATCTCTC 681
Query 660 GCTCGCTTGGAACCAGCTAACCGGTCCAGTATACCGGGTTTTACTCAGATTAAACCAGCT 719
|||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 682 ACTCGCTTGGAACCACCTAACCGGACCAGTAAACCGGGTTTTACTCAGATTAAACCAGCT 741
Query 720 CAATTACCTTGATCTCAGCTTAAACCGGTTCACCGGTGCAATCCCCGGTCAGATCTTCAC 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CAATTACCTCGATCTCAGCTTAAACCGGTTCACCGGTGCAATCCCCGGTCAGATCTTCAC 801
Query 780 CTTCCCGATCACCAATCTTCAATTACAACGCAATTTCTTCTACGGCGTGATCCAACCGCC 839
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 802 CTTCCCGATCACCAACCTCCAATTACAACGCAATTTCTTCTACGGCGTGATTCAACCGGT 861
Query 840 GAATCAGGTAACAATACCAACCGTCGATTTAAGCTACAACAGATTCTCCGGCGAGCTTTC 899
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 862 GAATCAGGTAACAATTCCGACCGTCGATTTAAGCTATAACAGATTCTCCGGCGAGCTTTC 921
Query 900 TCCGCTTCTCTCCAACGTACAGAACCTATATTTGAACAATAACCGGTTCACCGGTCAAGT 959
|||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct 922 TCCGCTTCTCTCCAACGTACAGAATATCTATCTAAACAATAACCGGTTCACCGGTCAAGT 981
Query 960 TCCGGTTAGCTTCGTGGATCGGTTATTGGCATCGAATATTCAAACACTGTACCTCCAACA 1019
|| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 982 ACCAGTTAGCTTCGTAGATCGGTTATTGGCATCGAATATACAAACACTATACCTCCAACA 1041
Query 1020 CAACTTCTTGACGGGAATACAAATTAGCCCGGCGGCAGATATTCCGGTGAGCAGCTCGCT 1079
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1042 CAACTTCTTGACGGGAATACAAATTAGCCCCGCGGCGGATATTCCGGTGAGCAGCTCGCT 1101
Query 1080 GTGTCTGCAATACAACTGTATGGTGCTACCGGTACAGACGCCGTGTCCGGTTAAAGCCGG 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1102 GTGTCTGCAATACAACTGTATGGTGCTACCGGTACAGACGCCGTGTCCGGTTAAGGCCGG 1161
Query 1140 TTTGCAGAAAACTAGACCCACAACGCAGTGCAGCGAGTGGCGAGGGTAA 1188
|||||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 1162 TTTGCAGAAAACCAGACCCACAACGCAGTGCAACGAGTGGCGAGGATAA 1210
> Ahg470318 jgi|Araly1|470318|fgenesh2_kg.1__272__AT1G03440.1
Length=1632
Score = 1059 bits (573), Expect = 0.0
Identities = 980/1177 (83%), Gaps = 25/1177 (2%)
Strand=Plus/Plus
Query 24 GGT-TTTGCTGCTTCTTCTTCGATTCGGTTTAATCGTGGAATCGA-TCATCGTCCCAGTT 81
||| |||| || | || ||||||||||| || || ||| ||| || | | |||||||
Sbjct 314 GGTGTTTGATGATCCTGCTTCGATTCGGGTTCTTCACGGAGGCGATTC-TGGACCCAGTT 372
Query 82 GATTTCTTGGCTCTGCAAGCGATTCGTAAATCACTCGATGATTTGCCAGGTTCCAATTTC 141
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 373 GATTTCTTGGCTCTGCAAGCGATTCGTAAATCGCTCGATGATTTGCCAGGTTCCAAGTTC 432
Query 142 TTCGATTCATGGGATTTCACCTCTGATCCTTGTAACTTCGCAGGAGTTTACTGTGACG-A 200
||||| || ||||||||||| |||||||||||| |||||| || || ||||| |||| |
Sbjct 433 TTCGAGTCTTGGGATTTCACTTCTGATCCTTGTGGCTTCGCTGGCGTCTACTGCGACGGA 492
Query 201 TGATAAAGTAACCGCGCTTAACCTCGGTGATCCAAGAGCCGGTTCACCCGGTTTATCTGG 260
|| ||||| | | || || ||||| ||||| |||||||| |||||||||||||| ||
Sbjct 493 -GAAAAAGTTATTTCTCTCAATCTCGGCGATCCCAGAGCCGGGTCACCCGGTTTATCGGG 551
Query 261 TCGGATTGACCCGGCTATTGGAAAACTCTCTGCTTTAACGGAGCTCTCTATCGTCCCGGG 320
|||||| ||||| ||||| || |||||||||||| | ||||||||||| || ||||| ||
Sbjct 552 TCGGATCGACCCAGCTATAGGCAAACTCTCTGCTCTCACGGAGCTCTCCATTGTCCCCGG 611
Query 321 TCGGA-TCATGGGTTCGTTACCG-CATACAATCTCACAG-TCAAAGAATCTTCGATTTCT 377
| || |||||||| | || ||| || ||| |||| ||| | ||||| ||| |||||||
Sbjct 612 -CAGAATCATGGGTGCTTTGCCGGCA-ACAGTCTCTCAGCTTAAAGAC-CTTAGATTTCT 668
Query 378 CGCAATCAGTCGGAATTTCATCTCCGGTGAGATTCCAGCGAGTCTAAGCGAGCTTCGGGG 437
||||||||||||||||||||||||||| |||||||| |||||||| | ||| |||| ||
Sbjct 669 CGCAATCAGTCGGAATTTCATCTCCGGCGAGATTCCGGCGAGTCTCGGTGAGGTTCGCGG 728
Query 438 ACTCAAAACGCTTGATTTGAGCTATAATCAGCTAACCGGGTCGATCCCTCCGTCAATCGG 497
||| | ||| || |||||||| || |||||| ||||||| | ||| |||||||||||||
Sbjct 729 ACTTAGAACACTGGATTTGAGTTACAATCAGTTAACCGGAACTATCTCTCCGTCAATCGG 788
Query 498 ATCCTTACCGGAGCTATCCAATCTGATTCTATGTCACAATCACTTGAAC-GGATCAATTC 556
||||||||||||||| |||||| ||||||| || ||||||||||| ||| |||||||| |
Sbjct 789 ATCCTTACCGGAGCTCTCCAATTTGATTCTCTGCCACAATCACTT-AACCGGATCAATCC 847
Query 557 CTCAATTCCTCTCACAATCCTTAACCCGAATCGATCTCAAGCGCAACAATCTCACCGG-T 615
||| || || |||||| || ||||||||||||||||||| ||||||| |||||||| |
Sbjct 848 CTCCGTTTCTATCACAAACCCTAACCCGAATCGATCTCAAACGCAACAGCCTCACCGGCT 907
Query 616 ATAATTTCTCTGACGTCTCTTCCGCCGTCGTTACAATATCTCTCGCTCGCTTGGAACCAG 675
||| |||| | ||||||| || |||||| ||||||| ||||| |||||||||||||||
Sbjct 908 C-AATCTCTCCGGCGTCTCTCCCTCCGTCGCTACAATACCTCTCACTCGCTTGGAACCAG 966
Query 676 CTAACCGGTCCAGTATACCGGGTTTTACTCAGATTAAACCAGCTCAATTACCTTGATCTC 735
||||||| || ||| ||| || |||||| | ||||||||||| || ||||| ||||||
Sbjct 967 TTAACCGGACCGGTAGACCATGTCTTACTCCGGTTAAACCAGCTTAACTACCTCGATCTC 1026
Query 736 AGCTTAAACCGGTTCACCGGTGCAATCCCCGGTCAGA-TCTTCACCTTCCCGATCACCAA 794
||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||| ||
Sbjct 1027 AGCTTAAACCGGTTCACCGGTACAATCCCCGGTC-GAATCTTCGCCTTCCCGATCACAAA 1085
Query 795 TCTTCAATTACAACGCAATTTCTTCTACGGCGTGATCCAACCGCCGAATCAGGTAACAAT 854
||||||||||||||||||||||||||||| |||| || ||| ||||||| || || ||
Sbjct 1086 CCTTCAATTACAACGCAATTTCTTCTACGGATTGATTCAGCCGGCGAATCAAGTGACGAT 1145
Query 855 ACCAACCGTCGATTTAAGCTACAA-CAGATTCTCCGGCGAGCTTTCTCCGCTTCTCTCCA 913
|||||||||||| | |||||||| | |||||||||| | | | |||||||||||||| |
Sbjct 1146 CCCAACCGTCGATCTCAGCTACAATC-GATTCTCCGGTGGGATATCTCCGCTTCTCTC-A 1203
Query 914 A-CGTACAGAACCTATATTTGAACAATAACCGGTTCACCGGTC-AAGTTCCGGTTAGCTT 971
| |||| |||| || || || |||| || || |||||||| | ||||||||| ||| ||
Sbjct 1204 AGCGTAGAGAATCTCTACTTAAACAGCAATCGCTTCACCGG-CGAAGTTCCGGCTAGTTT 1262
Query 972 CGTGGATCGGTTATTGGCATCGAATATTCAAACACTGTACCTCCAACACAACTTCTTGAC 1031
|||||| |||| || | ||| ||| || || ||||| || || || |||||||||||
Sbjct 1263 CGTGGAGAGGTTGTTATCGGCGAGTATACAGACGCTGTATCTGCAGCATAACTTCTTGAC 1322
Query 1032 GGGAATACAAATTAGCCCGGCGGCAGATATTCCGGTGAGCAGCTCGCTGTGTCTGCAATA 1091
||||||||| || ||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct 1323 GGGAATACAGATAAGCCCGGCGGCGGAAATCCCGGTGAGCAGCTCGCTGTGTCTGCAGTA 1382
Query 1092 CAACTGTATGGTGCTACCGGTACAGACGCCGTGTCCGGTTAAAGCCGGTTTGCAGAAA-A 1150
||||||||||||| ||| ||||||||||||||||| |||| ||||| || ||| |
Sbjct 1383 TAACTGTATGGTGCCGCCGTTACAGACGCCGTGTCCGCTTAAGGCCGGCCCACA-AAAGA 1441
Query 1151 CTAGACCCACAACGCAGTGCAGCGAGTGGCGAGGGTA 1187
|||| ||||| || || ||||||||||||||||||||
Sbjct 1442 CTAGGCCCACTACACAATGCAGCGAGTGGCGAGGGTA 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5