BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03030.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490258 jgi|Araly1|490258|fgenesh2_kg.6__3392__AT4G03030.1 2292 0.0
> Ahg490258 jgi|Araly1|490258|fgenesh2_kg.6__3392__AT4G03030.1
Length=1547
Score = 2292 bits (1241), Expect = 0.0
Identities = 1463/1566 (93%), Gaps = 32/1566 (2%)
Strand=Plus/Plus
Query 22 ATCTTCTCCATGACGATTCCGTTTCATTGATCGATCAA--T--C--A-AAATCTCGCCGG 74
|||||| | |||| |||||||||||||||||||||||| | | | ||||||||||||
Sbjct 1 ATCTTCGCAATGATGATTCCGTTTCATTGATCGATCAATCTCACTGACAAATCTCGCCGG 60
Query 75 AGTTTCTTCCCGCCGGCCTGAATCATGCCTCTGCCTATATTCCCGTCGCGGTTACAGTGT 134
||||||||||||||||| | || ||||||| ||||||||||| |||||||||||||||||
Sbjct 61 AGTTTCTTCCCGCCGGCATAAACCATGCCTTTGCCTATATTCTCGTCGCGGTTACAGTGT 120
Query 135 TCGTCTTCATCGTCTTCGTCGTCGTCGCGATCTTCGTTTTTTAGGCCTAAGCTTCGAATC 194
|| ||||||||||| || | ||||||||||| |||||| || | ||||||| |||||||
Sbjct 121 TCATCTTCATCGTCATC--C-TCGTCGCGATCGTCGTTTCTTCGTCCTAAGCCTCGAATC 177
Query 195 GATCCAAGCTTGACCTTAATTCCAGGCTTATCCAACGACGTCGGGAGACTGATTCTCTCC 254
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 178 GATCCAAGCTTGACCTTAATTCCAGGCTTATCCAACGACGTCGCGAGACTGATTCTCTCC 237
Query 255 TTCGTCCCTTACCCTCACATCTCTCGTATCAAATCAACCTGTAAATCATGGTACGCTTTC 314
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 238 TTCGTCCCTTACCCTCACATCTCTCGTCTCAAATCGACCTGTAAATCATGGTACGCTTTT 297
Query 315 CTCTCTTCCAAAACCCTAATTTCACTCCGCCATAGCAGAGACAACAGCAACACCAACAAT 374
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 298 CTCTCTTCCAAAACCCTAATTTCACTCCGCCATAGCCGAGACAACAGCAACATCAACAAT 357
Query 375 CTCTCGCATCTCCTTTGTATCTTCCCTCAGGATCCTTCGATTTCGCCTCCTTTTCTCTTC 434
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 CTCTCGCATCTCCTTTGTATCTTCCCTCAGGATCCTTCGATTTCGCCTCCGTTTCTCTTC 417
Query 435 GATCCCGTGACTCTCTCTTGGAGATCGCTTCCTCTTATGCCTTGTAACCCTCACGTTTAC 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GATCCCGTGACTCTCTCTTGGAGATCGCTTCCTCTTATGCCTTGTAACCCTCACGTTTAC 477
Query 495 GGTCTCTGCAATTTCGTAGCTGTAGCTCTTGGTCCTTACGTTTATGTCCTCGGTGGCTCT 554
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGTCTCTGCAATTTCGTAGCCGTAGCTCTTGGTCCTTACGTTTATGTCCTCGGTGGCTCT 537
Query 555 GCTTTTGATACTAGGTCTTATCCTCTTGATGTTCCTTTGCCTACTTCTTCTGTGTTTCGT 614
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 538 GCTTTTGATACTAGGTCTTATCCTCTGGATGTTCCTTTGCCTACTTCTTCTGTGTTCCGT 597
Query 615 TACAGCTTCGTGAAATCGGTTTGGGAACGGTTATCTCCGATGATGTCTCCGCGTGGTAGC 674
||||| ||| |||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 598 TACAGTTTCCTGAAATCGGTTTGGGAACGGCTCTCTCCGATGGTGTCTCCGCGTGGTAGC 657
Query 675 TTTGCTTGCGCTGCGATGCCTGGTTCTTGTGGTCGGATTATTGTGGCGGGAGGAGGATCA 734
|| || |||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 658 TTCGCGTGCGCTGCGATGCCTGGTTCGTCTGATCGGATTATTGTGGCGGGAGGAGGATCA 717
Query 735 CGGCACACTCTGTTTGGTGCTGCTGGAAGTAGAATGAGTTCTGTGGAGATGTATGATGTT 794
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 CGGCACACTTTGTTTGGTGCTGCTGGAAGTAGAATGAGTTCTGTGGAGATTTATGATGTT 777
Query 795 GAGAAAGATGAGTGGAGAGTAATGAATGAATTGCCTAGGTTTAGAGCAGGATGTGTTGGT 854
||||||||||||||||| | |||| |||| ||||||||||||||||||||||| |||||
Sbjct 778 GAGAAAGATGAGTGGAGGGAAATGGTTGAACTGCCTAGGTTTAGAGCAGGATGTCTTGGT 837
Query 855 TTCTTGGT-ggagaatgagaaggagaaggagaaggaggaggaagggagagagTTTTGGGT 913
|||||||| || |||||||||||||||||| | | || | ||||||||||||||
Sbjct 838 TTCTTGGTTGGT-AATGAGAAGGAGAAGGAG--G-A--AG-AT---AGAGAGTTTTGGGT 887
Query 914 TATGGGTGGCTATGGCGGATCGAGGACGGTTTCGGGGATTCTTCCTGTTGATGAGTACTA 973
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 888 AATGGGTGGCTATGGCGGATCGAGGACGGTTTCAGGGATTCTTCCTGTTGATGAGTACTA 947
Query 974 TAAAGACGCGGTAGTGATGGATTTGAGAGTAGATGGTGGTGAGAAATGGAGGGTAGTTGG 1033
||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 948 TAAAGACGCCGCAGTGATGGATTTGAGAGTAGATGGTGGTGAGAAATGGAGGATAGTTGG 1007
Query 1034 AGATATGTGGGGAGAAGAAGAGAGACCTAAGCTAGGGAAGATTGTTGCTGTTGATTGTGG 1093
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGATATGTGGGGAGAAGAAGTGCGACCTAAGCTAGGGAAGATTGTTGCTGTTGATTGTGG 1067
Query 1094 GAAGCCTGTGTTTTTCATGTTGGATAAGGATTGGATTCTTAGGTATGAGATGGGTTTGAA 1153
||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1068 AAAGCCGGTGTTTTTCATGTTAGATAAGGATTGGATTCTTAGGTATGAGAAGGGTTTGAA 1127
Query 1154 TCGTTGGAGAAAGGAGTCAAGCGTGCCTAAGAAAGCTCATTACGACAAACCGGTTGGTTT 1213
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1128 TCGTTGGAGAAAGGAGTCAAGCGTGCCGAAGAAAGCTCATTACGACAAACCGGTTGGTTT 1187
Query 1214 CGTTGCACTGAATGGGGAATTACATGTTATGATTCTTTTGGATGGTTATAATCTGATGGA 1273
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 TGTTGCACTGAATGGTGAATTACATGTTATGATTCTTTTGGATGGTTATAATCTGATGGA 1247
Query 1274 TACAAGGCATACTAGACAACAGAGGAAAGCTGGATCTTTGATGATTCATATGTATGATCC 1333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 CACAAGGCATACTAGACAACAGAGGAAAGCTGGATCTTTGATGATTCATATGTATGATCC 1307
Query 1334 AAAGAAGAAGACTTGGAGATCGGTTGTCTCAAAGCCACCGTTCAATCATCAACTTGATTT 1393
||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1308 AAAGAAGAAAACTTGGAGATCGGTTGTCTCAAAGCCGCCGTTTAATCACCAACTTGATTT 1367
Query 1394 CAGGACCACGGTTATGTGCACCATCCGATTGTAGTAGGTGTAAAAAA--CTCTCATCACA 1451
|||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 1368 CAGGACCACGGTTATGTGCACCATCCGATTGTAG--G-TGTAAAAAAAACTCTCATCACA 1424
Query 1452 CATCATCTAGAATAAAATTTGGTGTTCATGTTGTGTGAGCTCTGATGATGTTT-AGGTAT 1510
|||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||
Sbjct 1425 --TCATCTAGAATAAAATTTGGTGTTCATGGTGTGTGAGATCTGCTGATGTTTTAGGTAT 1482
Query 1511 TGGTTCGTTTC-TTATACCACTTACATATG-TTACCACACTGTCTGTACAAGTTGaaaaa 1568
||||||||||| || |||||| |||||||| |||||||| |||||||||| | |||||||
Sbjct 1483 TGGTTCGTTTCGTT-TACCACATACATATGATTACCACATTGTCTGTACAGGATGAAAAA 1541
Query 1569 caaaaa 1574
||||||
Sbjct 1542 CAAAAA 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5