BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03060.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490257 jgi|Araly1|490257|fgenesh2_kg.6__3391__AT4G03060.1 1755 0.0
> Ahg490257 jgi|Araly1|490257|fgenesh2_kg.6__3391__AT4G03060.1
Length=1553
Score = 1755 bits (950), Expect = 0.0
Identities = 1188/1294 (92%), Gaps = 52/1294 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTCATGCAGTCTTCAGCTTCCACTCATCAATCTTGCGGACAAAACCCTAGAACCA 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 ATGGGTTCATGCAGTCCTCAGCTTCCACTCATCAATCTTGCGGACAAAACCCTAGAACCA 74
Query 61 GGAAGCTCAAAGTGGGCTGAAGTGAGGAGTGATGTCCGTAAAGCTCTCGAAGACTTCGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GGAAGCTCAAAGTGGGCTGAAGTGAGGAGTGATGTCCGTAAAGCTCTCGAAGACTTCGGT 134
Query 121 TGTTTCGAAGCTTCATATGATAAAGTGTCATTGGAGCTTCAGGAATCAATTATGAAAACC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 135 TGTTTCGAAGCTTCATATGATAAAGTGTCATTGGAGCTTCAGGAATCGATTGTGAAAACC 194
Query 181 ATGGAAGAGCTTTTCGCATTGCCAGTTGAGACCAAACAACGAAACGTGTGCCCCAAACCT 240
|||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 195 ATGGAAGAGCTTTTCGGATTGCCAGTTGAGACCAAAAAAAGAAACGTGTGCCCCAAACCT 254
Query 241 TACGTTGGATATTTGAATCATAATAATCTCTCCGAGAGTTTGGGGATAAGTAATGCTAAT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 255 TACGTTGGATATTTGAATCATAATAATCTCTCCGAGAGTTTGGGGATCAGTAATGCTAAT 314
Query 301 ATTTTGGAGAACATCAACGAATTTACTCAACAACTATGGCCTCATGGTGACGGTAACGAG 360
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 315 ATTTTGGAGAACATCAACGAATTTTCTCAACAGCTATGGCCTGATGGTGACGGTAACGAG 374
Query 361 AATATCAGTAAAACGATCCAGTTGTTTGCGGAGAAGTTAGTGGAAATAGATGTGATGGTG 420
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 375 AATATCAGTAAAACGATCCAGTTGTTTGCAGAGAAGTTAGGGGAAATAGATGTGATGGTG 434
Query 421 AGAAGAATGGTAATGGAGAGCTTTGGAATAGAAAAATACATTGATGACCATCTAAAGTCT 480
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 435 AGAAGAATGGTAATGGAGAGCTTTGGAATAGAAAAATACATTGATGAACATCTAAATTCT 494
Query 481 ACGG----C-GTATGCGACTGATGAAGTATATTGCACCACCTGAGGGTGATGCTAATACT 535
|||| | |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 495 ACGGAATACCGTATGCGACTGATGAAGTATATTGCACCACCTGATGGTGATGCTAATACT 554
Query 536 ACTGTTGACGATAATGCTGATCTTCTTGCTAAGCTTAA--T--AT--TG-T--TGGTGTT 586
|||||| ||||||||||||||||||||||||||||||| | || || | |||||||
Sbjct 555 ACTGTTAACGATAATGCTGATCTTCTTGCTAAGCTTAACATTGATGGTGATGATGGTGTT 614
Query 587 GAACCTAATGTTGGTGTTAAAGTTAATGCCGATATTAGTGATGATGTTAATGCTAATGCT 646
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GGTCCTAATGTTGGTGTTAAAGTTAATGCCGATATTAGTGATGATGTTAATGCTAATGCT 674
Query 647 AGTGTTAATGCTGGTGTTGGTGCTAATGTTAACGCTGATACCGGTGTTAATGATAATCTT 706
|||||| | | || |||||||||| | |||| | | | |||| | |
Sbjct 675 AGTGTT---G--G-TG------CTAATGTTAATGATGAT-C---T-T-AATG-T--TG-- 711
Query 707 AATGTTGATGCTAATGTTGCCGTCGGTGGTGGCGTTAATGCTAATACTGATCTTGGTGTT 766
| || ||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 712 A-TGCTGAAGCTAATGTTGCCATCGGTGGTGGTGTTAACGCTAATACTGATCTTGGTGTT 770
Query 767 GGTGTTAATGTCAATTCTAATGTTGCTGTGAATGCTAAAACTGGTG-----G-TG---AT 817
||||||||||| ||||||||||||| ||| ||||||| |||||||| | || ||
Sbjct 771 GGTGTTAATGTTAATTCTAATGTTGATGTTAATGCTATAACTGGTGCTACTGGTGGGGAT 830
Query 818 GATGTTGAGGCTAATGATGATAATGAGGAAAAGAAGTTGGGTTTACCTTGTCATACTGAT 877
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 831 GGTGTTGAGGCTAATGATGATAATGAGGAGAAGAAGTTGGGTTTACCTTCTCATACTGAT 890
Query 878 AAAAACCTTTTCACAGTACTTTTTCAACATGAAATTGAAGGTTTGGAGGTAAAGACCAAA 937
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 891 AAAAACCTTTTCACAGTACTTTTTCAACATGAAATTGAAGGTTTGGAGGTACTGACCGAA 950
Query 938 GATGAGAAGTGGATCAGAGTGAAACCATCCCCGAATACTTTCATTGTTATTGCCGGAGAT 997
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 951 GATGACAAGTGGATCAGAGTGAAACCATCCCCGAATACTTTCACTGTTATTGCCGGAGAT 1010
Query 998 TCCCTATGTGC---TCTTATGAATGGTAGAAT-CAGGGCTCCGTATCACCGAGTAAGAGT 1053
|| ||||||| ||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct 1011 TCTCTATGTGTAAGTCTTATGAACGGTAGAATTC-GTGCTCCGTATCACCGAGTAAGAGT 1069
Query 1054 GACCGAGAAAAAGAGGACAAGATACACAGCAGCAATTTTCACGTGTCCAAAACCGGACTA 1113
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1070 AACGGAGAAAAAGAAGACAAGATACACAGCAGCAATTTTCACGTGTCCAAAACCAGATTA 1129
Query 1114 TGTCATAGAGGCACCAAAAGAACTTGTGGACGAGAAGCATCCACGTCTCTTCAGACCTTT 1173
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1130 TATCATAGAGGCACCAATAGAACTTGTGGACGAGAAGCATCCACGTCTCTTCAGACCCTT 1189
Query 1174 TGATTACCGCGACTTGTTTACATTCTATCACTCAGAAGCTGGTCGCAAAATTCAATATAC 1233
||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| |||
Sbjct 1190 TGATTACCGCGACTTGTTTACCTTCTATCACTCAGAAGCTGGTCGTAAAGTTCAATCTAC 1249
Query 1234 TCTTCAAGCTTATTGTGCCGTCTCCGAAGCATAA 1267
||||||||||||||||||||||||||||||||||
Sbjct 1250 TCTTCAAGCTTATTGTGCCGTCTCCGAAGCATAA 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5