BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03100.1
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490253 jgi|Araly1|490253|fgenesh2_kg.6__3387__AT4G03100.1 2366 0.0
> Ahg490253 jgi|Araly1|490253|fgenesh2_kg.6__3387__AT4G03100.1
Length=1625
Score = 2366 bits (1281), Expect = 0.0
Identities = 1517/1624 (93%), Gaps = 43/1624 (3%)
Strand=Plus/Plus
Query 1 CTTCCATagagagagaagaagaagcacaaagtccagagagaaagagagagagaagCTGCG 60
|||||| |||||||||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 1 CTTCCAAAGAGAGAGAAGAAGAAGCAC-AAGTCC--AGAG--AGAGAGAGAGAAGCTGCG 55
Query 61 AAAATCTTTCATAGTTCTCAATGACGGGGCTAGTGATGATGACTaaaggcggaggttgcg 120
||| |||| | ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 56 -AAA--TTTC-TTCATCT-AATGACGGGGCTTGTGATGATGACTAAAGGCGGAGGTT--- 107
Query 121 gcggcggaggaaaaggaggaaggagaaaatcaacggcggaggaggaagaagaagaagagc 180
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 108 GCGGCGGAGGAAAAGGAGGAAGGAGAAAATCTACGGCGGAGGAAGAAGAAGAAGAAGAGC 167
Query 181 agaaTCAGCAACAACTGTCTCTTGTTGAGTTTCTCTTAACGGCGCTGCGTAAATCTGTGG 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 168 AGAATCAGCAACAACTGTCTCTTGTCGAGTTTCTCTTAACGGCGCTGCGTAAATCAGTAG 227
Query 241 TTTCTTGCCGTGTAGACAACAGACAAGACGACGGCGGAGTAGGCGGAGGGATTTCGTCCG 300
| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 228 TATCTTGCCGTGTAGACAACAGACAAGACGA---C------GGCGGAGGGATTTCGTCCG 278
Query 301 CCGTTCATCACATGGAGATCGGTTGGCCAACAAATGTTCGACACATCACTCATGTAACAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 CCGTTCATCACATGGAGATCGGTTGGCCAACAAATGTTCGACACATCACTCATGTAACAT 338
Query 361 TCGATCGATTCCATGGCTTTCTTGGTCTCCCTCACGAGCTTCAAGTTGAGATCCCATGTC 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 339 TCGATCGATTCCATGGCTTTCTTGGTCTCCCTCACGAGCTTCAAGTCGAGATCCCATGTC 398
Query 421 GAGTCCCTAGTGCAAGTGTGAGTGTGTTTGGTGTATCGGCGGAATCGATGCAATGTTCTT 480
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 399 GAGTCCCTAGCGCAAGTGTGAGCGTGTTTGGTGTATCGGCGGAATCGATGCAATGTTCTT 458
Query 481 ATGATGAGAAAGGAAACAGTGTCCCAACGATTCTATTACTTATGCAGGAGAGACTCTATT 540
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 459 ATGACGAGAAAGGAAACAGTGTCCCAACTATTCTATTACTTATGCAGGAGAGACTATACT 518
Query 541 CTCAACAAGGTCTTAAGGCTGAAGGAATTTTCAGGATAAACCCTGAGAATAGTCAAGAGG 600
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCAAGAAGGTCTCAAGGCTGAAGGAATTTTCAGGATAAACCCTGAGAATAGTCAAGAGG 578
Query 601 AACATGTAAGAGACCAACTAAACAGAGGTATTGTACCTGAGAATATTGATGTGCATTGTT 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AACATGTAAGAGATCAACTAAACAGAGGTATTGTACCTGAGAATATTGATGTGCATTGTT 638
Query 661 TGGCTGGTCTTATTAAAGCTTGGTTTAGAGAGTTACCAAGTGGAGTGCTTGATGGTCTTT 720
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 639 TGGCTGGTCTTATTAAAGCTTGGTTTAGAGAGTTACCTTGTGGAGTGCTTGACGGTCTTT 698
Query 721 CTCCTGAGGAAGTTCTCAATTGCAACACTGAGGATGAATCCGTTGAACTCATTAAGCAGT 780
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 699 CTCCTGAGGAAGTTCTCAATTGCAACACCGAGGATGAATCTGTTGAACTCATTAAGCAGT 758
Query 781 TGAAGCCAACTGAGTCTGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TGAAGCCAACTGAGTCTGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTTG 818
Query 841 AAGAAGAAGAGTCTAACAAAATGAATGCAAGGAATATAGCCATGGTTTTTGCTCCTAATA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AAGAAGAAGAGTCTAACAAAATGAATGCAAGGAATATAGCCATGGTTTTTGCTCCTAATA 878
Query 901 TGACTCAGATGACAGATCCATTAACGGCTCTTATGCATGCTGTTCAAGTGATGAACTTGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TGACTCAGATGACAGATCCATTAACGGCTCTTATGCATGCTGTTCAAGTGATGAACTTGC 938
Query 961 TTAAGACTCTTATCACAAAGACACTAGCTGAACGGGAAGAAAATGCTACCGGATCAGAAG 1020
|||||||||| |||||||| ||||| |||||||| ||||||| |||||||||||||||||
Sbjct 939 TTAAGACTCTCATCACAAAAACACTGGCTGAACGCGAAGAAACTGCTACCGGATCAGAAG 998
Query 1021 GATATTCTCCATCCCACTCATCCAATTCTCAAACTGATTCTGATTCTGACAATGCACAAG 1080
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 999 GATATTCTCCATCCCACTCATCCAATTCCCAAACTGATTCTGATTCTGACAATGCACAAG 1058
Query 1081 ACATGGAAGTCAGCTGTGAATCACAAGCCACAGATTCGGAATGCGGAGAAGAAGAAGAAG 1140
|||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1059 ACATGGAAGTCAGCGGTGAATCACATGGCACAGATTCGGAATGCGGAGAAGAAGAAGAAG 1118
Query 1141 TAGAGGAAGTAGAACAGCATCAAGAACATCTCAGCCGCCACTCTACCCACGAAGATGAA- 1199
|| | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1119 -AG-G----TAGAACAGCAACAAGAACATCTCAGCCGCCACTCTACCCACGAAGATGAAC 1172
Query 1200 ACCGATATTGGATCATTATGTTCAATAGAGAAATGCTTCTTGAATCAACTCAACAACAAT 1259
|| ||||||||||||||| | |||||||||||||||||||||| ||| |||||||||||
Sbjct 1173 AC-GATATTGGATCATTAAGCTCAATAGAGAAATGCTTCTTGAGTCAGCTCAACAACAA- 1230
Query 1260 GCTGCTAGAGTTTCAAACACCAGTATCTCTGAAGACTGGAGTCCTAAAGCATTTCCGCTT 1319
| |||||||||||||||||||||| | ||||||||||||| |||||||||| |||||
Sbjct 1231 -C-GCTAGAGTTTCAAACACCAGTACCACTGAAGACTGGAGCCCTAAAGCATCACCGCTA 1288
Query 1320 GTATCATTCACAGAAAACAAAAGCAACACTTTGAGCTCAAGCACTAGCGACTAAGATT-- 1377
|||||||||||||| ||||||| || || ||||||||||||||| ||||||||||||
Sbjct 1289 GTATCATTCACAGAGAACAAAAACATCATTTTGAGCTCAAGCACAAGCGACTAAGATGAA 1348
Query 1378 ----CAAGCCTGGTCTGCATTTCCCACGCTTTCACCAGTGACAACCTCATTTCTATGTAG 1433
|||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct 1349 GAAGCAAGCCTGATCTGCATTTCCCACGCTTTCACCGGTGACAAACTCATTTTTATGTAG 1408
Query 1434 TTTCTGTTCAATCTGCTGCAGAGAAGAAACAAGAAGGCAGAAAAACAGCTTTGTGTCTGT 1493
||||||||||||||||||||||||| ||||||||||| |||||| | | || ||||||||
Sbjct 1409 TTTCTGTTCAATCTGCTGCAGAGAACAAACAAGAAGGAAGAAAA-CTGGTT-GTGTCTGT 1466
Query 1494 AAATCAATACAGAAATTATTGTCCAATTCGTTAGGGTCTTTAGGGATTGTTGGTGAGAAG 1553
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1467 AAATCAATACAGAGATTATTGTCCAATTTGTTAGGGTCTTTAGGGATTGTTGGTGAGAGG 1526
Query 1554 TCTGATTTTAGGGTTCAACAAGGGCTGAACctgtctgtgttgactgttcttgttgttgt- 1612
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1527 TCTGATTTTAGGGTTCAACAAGGGCTGAACCTGTCTGTGTTGACTGTTGTTGTTGT-GTC 1585
Query 1613 tgtc 1616
||||
Sbjct 1586 TGTC 1589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63420257925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5