BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03110.1
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490251 jgi|Araly1|490251|fgenesh2_kg.6__3385__AT4G03110.1 2499 0.0
Ahg470321 jgi|Araly1|470321|fgenesh2_kg.1__275__AT1G03457.2 289 6e-77
> Ahg490251 jgi|Araly1|490251|fgenesh2_kg.6__3385__AT4G03110.1
Length=1736
Score = 2499 bits (1353), Expect = 0.0
Identities = 1655/1787 (93%), Gaps = 75/1787 (4%)
Strand=Plus/Plus
Query 15 aaataaataaatttttagaaaccaaaaaaaaaattgtagagagagaaaaaaaaaaCTCAG 74
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 1 AAATAAATAAATTTTTAGAAACC--AAAAAAAATTATAGAGAGAG----AAAAAACTCAG 54
Query 75 AGGAGAGAAAGAGAAGACGACGAAGACGACCAttttttttttttttGTCAAGAGAGAAGA 134
||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 55 AGGAGAGAAAGAGAAGACGACGAAGACGA-CA------ATTTTTTTGTCAAGAGAGAAGA 107
Query 135 CGGAGACAACAATGGCGGAAGCGAAGGAGGAGAATAGGGAGAAAAACGAAGAAGAAGAGA 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 CGGAGACAACAATGGCGGAAGCGAAGGAGGAGAATAGGGAGAAAAACGAAGAAGAAGAGA 167
Query 195 GCGTAAAGCTTTTCGTCGGACAAATTCCGAAACATATGTCGGAATCTCAACTCTTAACAT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GCGTAAAGCTTTTCGTCGGACAAATTCCGAAACATATGTCGGAATCTCAACTCTTAACAT 227
Query 255 TGTTTCAAGAGTTCGCTGTCGTTGACGAGGTCAATATCATCAAGGACAAGATTACACGCG 314
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 228 TGTTTCAAGAGTTCGCTGTCGTAGACGAGGTCAATATCATCAAGGACAAGATTACACGCG 287
Query 315 CCTCTCGAGGATGTTGTTTTCTGCTATGTCCATCGAGAGAAGAAGCAGATAAGTTGGTCA 374
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 288 CCTCTCGAGGATGTTGTTTTCTGCTATGTCCATCGAGAGAAGAAGCTGATAAGTTGGTCA 347
Query 375 ATGCTTGCCATAACAAGAAGACATTGCCTGGGGC-TAACAGTCTATTGCAAGTAAAGTAT 433
|||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 348 ATGCTTGCCATAACAAGAAGACATTGGCTGGGGCGTC-CAGTCTATTGCAAGTAAAGTAT 406
Query 434 GCAGATGGCGAATTAGAAAGGCTAGAGCATAAGCTATTTGTTGGTATGCTTCCAAAGAAT 493
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 407 GCAGATGGCGAATTGGAAAGGCTAGAGCATAAGCTCTTTGTTGGTATGCTTCCAAAGAAT 466
Query 494 GTCTCTGAAGCTGAAGTTCAATCTTTATTCTCCAAGTACGGGACCATAAAGGATCTACAG 553
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 467 GTCTCTGAAGCTGAAGTTCAATCTTTATTCTCCAAGTATGGGACCATAAAAGATCTACAG 526
Query 554 ATTCTAAGAGGTGCTCAACAAACGAGCAAAGGCTGTGCATTTCTGAAGTATGAGACAAAA 613
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 527 ATTCTAAGAGGTGCTCAACAAACAAGCAAAGGCTGTGCTTTTCTTAAGTATGAGACAAAA 586
Query 614 GAACAAGCTGTTTCCGCCATGGAATCTATCAACGGAAAACATAAAATGGAGGGTTCAACT 673
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 587 GAACAAGCTGTTTCTGCCATGGAATCCATCAACGGAAAACATAAAATGGAGGGTTCGACT 646
Query 674 GTTCCTTTAGTTGTCAAATGGGCAGACACAGAACGAGAAAGACACACAAGAAGACTTCAA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GTTCCTTTAGTTGTCAAATGGGCAGACACAGAACGAGAAAGACACACAAGAAGACTTCAA 706
Query 734 AAGGCTCAATCTCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTT 793
|||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||
Sbjct 707 AAGGCTCAATCTCACATCGCTCGATTATCTAACGCTGATCCAACAAATCCCTCATTGTTT 766
Query 794 GGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATCAGCCTCCT 853
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 767 GGAGCATTACCTATGGGTTATGTTCCACCATATAATGGATATGGTTATCATCAGCCTCCT 826
Query 854 GGAACTTATGGTTACATGCTACCACCAATTCAGAACCAAGCTGCATTTTCCAATATGATT 913
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 827 GGAACTTATGGTTACATGCTACCACCAATTCAGAACCAAGCTGCATTTCCCAATATGATT 886
Query 914 GCACAACCAAACCAAGGTAATAACAATGCATTGCAAGGAACATCGCCTGACTCTGTGCCG 973
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 887 GCACAACCAAACCAAGGTAATAACAATGCATTGCAAGGAACGTCGCCTGACTCTGTGCCA 946
Query 974 CCTCGTTTGGCCCGTAGAAACTTTCCTATGCCTCCTGGAAACTACATGGGATCTGGTTAT 1033
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 947 CCTCGTTTGGCCCGCAGAAACTTTCCTATGCCTCCTGCAAACTACATGGGATCTGGTTAT 1006
Query 1034 CCTGCTATGCGAGGTCATCCTTTTCCATTTGCTTATCCCAGAGGAATTGTTAGTCCTCGC 1093
|||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1007 CCTGTTGTACGAGGTCATCCTTTTCCATTTGCTTATCCCAGAGGAATTGTGAGTCCTCGC 1066
Query 1094 CCTCTAAGTAGCTCTCCTGGATC--TAT-A--T--CA---CC-----TGGCATGTCAACA 1138
||| ||||||||||||||||||| ||| | | || || |||||||||||||
Sbjct 1067 CCTGTAAGTAGCTCTCCTGGATCCATATCACCTGGCATTGCCAACAGTGGCATGTCAACA 1126
Query 1139 -C-C-TTTAGGCATTGGTTTGAGTTCTGTGGTTCAAACCGAAGGTCCAGAAGGTGCAAAT 1195
| | |||||| |||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1127 ACACCTTTAGGAATTGGTTTGAGTTCCGTGGTTCAAACCGAAGGTCCGGAGGGTGCAAAT 1186
Query 1196 CTGTTTATCTATAACATACCTCGGGAGTTCGGGGATCAAGAACTCGCGGCTGCATTTCAA 1255
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1187 CTGTTTATCTATAACATACCTCGGGAATTTGGGGATCAAGAACTCGCGGCTGCATTTCAA 1246
Query 1256 TCTTTCGGTATTGTTCTGAGTGCCAAGGTTTTTGTAGACAAAGCCACTGGTGTAAGCAAA 1315
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1247 TCTTTCGGTATTGTTCTGAGTGCCAAGGTTTTTGTAGACAAAGCTACTGGTGTAAGCAAA 1306
Query 1316 TGTTTCGGTTTTGTTAGCTATGACTCACAAGCCGCGGCGCAGAACGCTATTGACATGATG 1375
||||||||||||||||| || ||||||||||| || |||||||||||||||||| |||||
Sbjct 1307 TGTTTCGGTTTTGTTAGTTACGACTCACAAGCAGCCGCGCAGAACGCTATTGACGTGATG 1366
Query 1376 AATGGTCGCCATTTAGGCGGTAAGAAATTGAAAGTCCAGCTTAAGAGAGACAGCAACAAT 1435
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1367 AATGGTCGCCATTTAGGTGGTAAGAAATTGAAAGTCCAACTTAAGAGAGACAACAACAAT 1426
Query 1436 GGCCAACCGAGTAGTAATCCTTCCTTAATCTCCTGAAAGTGCTAAAACTCCTCCTCTCTT 1495
||||||| || |||||||||||||||| |||| ||||||||||||| ||| |
Sbjct 1427 GGCCAAC--AG-------CCTTCCTTAATCTCCTAAAAG-GCTAAAACTCCTC-TCT-T- 1473
Query 1496 CAACTTGAAAGTTCATAACAGaaaaaaa-----caaaaaaCATATTCGGGCTTATGGGTC 1550
|||||||||||||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct 1474 CAACTTGAAAGTTCATAACAGAAAAAAAAAAAACAAAAAACATATTCAGGCTAATGGGTC 1533
Query 1551 GACCCGGTTCAAAGATTTGGACCGATCTTGAATGGATGCATCTGTATAGATCCAAATCTC 1610
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1534 GACCCGGTTCAAAGATTTGGACCGATCTTGAATGGATACATCTGTATAAATCCAAATCTC 1593
Query 1611 ATTGTGGGTCAAAATGTCCCATCAACTCAAAAGCTCCAAACTGGATCATCTCTTTTCttt 1670
|||||||||||||||||||||||||||||| | | | | | |||| |||
Sbjct 1594 ATTGTGGGTCAAAATGTCCCATCAACTCAA----T------T---T--T-T-TTTT-TTT 1635
Query 1671 ttttttttAATCTGCAAATAACAATTTGTAATTTATGTTTATTATTGAAACTCATGTAGA 1730
|||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1636 TTTTC------CTGCAAATAACAATTTGTAATTTATGTGTATTATTGAAATTCATGTAGA 1689
Query 1731 AATTTTATGATTTATTAACATTAAATTCATTGAATTCTTCTTCTATC 1777
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1690 AATTTTATGATTTATTAACATTAAATTCATTGAATTTTTCTTCTATC 1736
> Ahg470321 jgi|Araly1|470321|fgenesh2_kg.1__275__AT1G03457.2
Length=1651
Score = 289 bits (156), Expect = 6e-77
Identities = 226/261 (87%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1167 TTCAAACCGAAGGTCCAGAAGGTGCAAATCTGTTTATCTATAACATACCTCGGGAGTTCG 1226
||||||| ||||| |||| |||||| ||||| ||||| ||||||||||| || || ||||
Sbjct 1011 TTCAAACAGAAGGACCAGCAGGTGCGAATCTATTTATTTATAACATACCACGAGAATTCG 1070
Query 1227 GGGATCAAGAACTCGCGGCTGCATTTCAATCTTTCGGTATTGTTCTGAGTGCCAAGGTTT 1286
|||||||||||||||| ||||| |||||| |||| |||| ||||| || |||||||| |
Sbjct 1071 GGGATCAAGAACTCGCAGCTGCGTTTCAACCTTTTGGTAAGGTTCTAAGCGCCAAGGTGT 1130
Query 1287 TTGTAGACAAAGCCACTGGTGTAAGCAAATGTTTCGGTTTTGTTAGCTATGACTCACAAG 1346
|||||||||| ||||||||| |||||||||||||||| || |||| |||||||||||||
Sbjct 1131 TTGTAGACAAGGCCACTGGTATAAGCAAATGTTTCGGATTCATTAGTTATGACTCACAAG 1190
Query 1347 CCGCGGCGCAGAACGCTATTGACATGATGAATGGTCGCCATTTAGGCGGTAAGAAATTGA 1406
| || || |||||||||||| | | ||||| ||| |||| ||| |||||||||||||||
Sbjct 1191 CAGCTGCTCAGAACGCTATTAATACAATGAACGGTTGCCAATTAAGCGGTAAGAAATTGA 1250
Query 1407 AAGTCCAGCTTAAGAGAGACA 1427
|||||||||||||||||||||
Sbjct 1251 AAGTCCAGCTTAAGAGAGACA 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5