BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03115.1
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895679 jgi|Araly1|895679|Al_scaffold_0006_3675 1382 0.0
> Ahg895679 jgi|Araly1|895679|Al_scaffold_0006_3675
Length=921
Score = 1382 bits (748), Expect = 0.0
Identities = 856/908 (94%), Gaps = 8/908 (1%)
Strand=Plus/Plus
Query 39 AGTTGTTGAAGGGAATGAAGAATTGAGGAAGCCA-CAGAATCTGATTCCGCCGTTTTCAA 97
||||||||||||||| |||||| |||||||| || ||||||||| |||||||||||||||
Sbjct 21 AGTTGTTGAAGGGAAGGAAGAACTGAGGAAG-CATCAGAATCTGCTTCCGCCGTTTTCAA 79
Query 98 AGGTGGTGTCTCATTTTGGCATTAGCGGAATCTCCGTCGCATTGGCCACTGGCGTGACTC 157
||||||||||||||||||||| ||| ||| | ||||| || || ||||| ||||| ||||
Sbjct 80 AGGTGGTGTCTCATTTTGGCACTAGTGGATTGTCCGTTGCGTTAGCCACCGGCGTCACTC 139
Query 158 ATCCTCTCGATGTAGTGAAAGTGAGATTGCAGATGCAGCATGTCGGCCAAAGAGGTCCGT 217
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 140 ATCCTCTCGATGTAGTGAAAGTAAGATTGCAGATGCAGCATGTCGGCCAAAGAGGTCCTT 199
Query 218 TAATTGGAATGACTGGAATCTTTCTTCAACTGATGAAGAATGAAGGGCGTAGGTCTTTAT 277
||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||
Sbjct 200 TAATTGGAATGACTGGAATCTTTGTTCAACTAATGAAGAATGAAGGGTTTAGGTCATTAT 259
Query 278 ACTTGGGGTTGACTCCTGCTCTCACTAGATCAGTGCTTTACGGAGGTCTTAGATTGGGAT 337
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 260 ACTTGGGGTTGACTCCTGCTCTTACTAGATCAGTGCTTTACGGAGGTCTCAGATTGGGAT 319
Query 338 TATATGAACCCACCAAGGTTTCTTTTGATTGGGCATTTGGATCTACCAATGTCTTGGTCA 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 320 TATATGAACCCACCAAGGTTTCTTTTGATTGGGCATTTGGATCTACCAATGTCTTGGTTA 379
Query 398 AGATAGCATCAGGCGCATTCGCCGGGGCGTTTTCCACTGCATTAACTAACCCTGTTGAAG 457
|||| || |||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 380 AGATTGCCTCAGGCGCATTCGCTGGGGCGTTTTCCACAGCATTAACTAACCCCGTTGAAG 439
Query 458 TTGTTAAGGTAAGGTTGCAGATGAATCCAAACGCAGTTCCCATTGCAGAAGTGCGGGAAA 517
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 440 TTGTTAAGGTAAGGTTGCAGATGAATCCAAACGCAGTTCCAATTGCAGAAGTGCGGGAAA 499
Query 518 TAGTCTCTAAAGAAGGCATAGGAGCTTTATGGAAAGGAGTTGGTCCTGCCATGGTTAGAG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TAGTCTCTAAAGAAGGCATAGGAGCTTTATGGAAAGGAGTTGGTCCTGCCATGGTTAGAG 559
Query 578 CTGCAGCACTAACTGCCTCACAGCTTGCAACATATGATGAAGCCAAACGGATTCTGGTTA 637
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 560 CTGCCGCACTAACTGCCTCACAGCTTGCAACATATGATGAAACCAAACGGATTCTGGTTA 619
Query 638 AACGAACTTCTTTAGAAGAAGGGTTTCATCTTCATTTGTGCTCAAGTGTGGTTGCAGGTT 697
|||||||||||||||||||||||||||| ||||||||||| | ||| | ||||||||
Sbjct 620 AACGAACTTCTTTAGAAGAAGGGTTTCAACTTCATTTGTG-T---GTG-G-TTGCAGGTG 673
Query 698 TAGTAAGCACACTGATAACCGCACCCATGGACATGATTAAAACCCGCTTGATGTTGCAGC 757
| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 674 TCGTAAGCACACTGATAACGGCGCCCATAGACATGATTAAAACACGCTTGATGTTGCAGC 733
Query 758 AAGGTTCTGAAAGCACCAAAACCTACAGAAACGGGTTTCATTGCGGTTACAAGGTTGTTC 817
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 734 AAGGTTCTGAAAGCACCAGAATCTACAGAAACGGGTTTCATTGCGGTTACAAGGTTGTTC 793
Query 818 GCAAAGAAGGTCCTCTGGCACTTTACAAAGGAGGCTTTGCAATTTTCGCACGGCTCGGGC 877
|||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 794 GCAAAGAAGGACCTCTGGCACTTTACAAAGGTGGCTTTGCGATTTTTGCACGGCTCGGGC 853
Query 878 CACAAACGATGATCACGTTCATACTATGCGAGAAGCTTAGATCACTCGCTGGACTTCACA 937
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 854 CACAAACGATGATCACGTTCATACTATGCGAGAAGCTAAGATCACTCGCTGGACTTCACA 913
Query 938 CAATGTAG 945
||||||||
Sbjct 914 CAATGTAG 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70352682515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5