BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03120.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943403 jgi|Araly1|943403|scaffold_603947.1 760 0.0
> Ahg943403 jgi|Araly1|943403|scaffold_603947.1
Length=654
Score = 760 bits (411), Expect = 0.0
Identities = 456/477 (96%), Gaps = 5/477 (1%)
Strand=Plus/Plus
Query 65 GGTTCTCTGGAACT-TTCTGAACGATGCCGAGGTATTACTGTGATTATTGCGATACTTAT 123
|||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTTCTTTGGAA-TCTTCT-AACGATGCCGAGGTATTACTGTGATTATTGCGATACTTAT 58
Query 124 CTCACTCACGATTCCCCATCAGTAAGGAAGCAGCACAATGCTGGTTACAAACACAAGGCG 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 59 CTCACTCACGATTCCCCATCAGTAAGGAAGCAGCACAATGCTGGTTACAAGCACAAGGCG 118
Query 184 AATGTGAGAATATACTATCAGCAATTTGAGGAACAACAAACCCAAAGTTTGATTGATCAG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AATGTGAGAATATACTATCAGCAATTTGAGGAACAACAAACCCAAAGTTTGATTGATCAG 178
Query 244 AGAATTAAGGAACATCTTGGCCAAACTGGAGGGTATCAACAGGTTGGTGCTGTGTTTAAT 303
||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 179 AGAATTAAGCAACATCTTGACCAAACTGGAGGGTATCCACAGGTTGGTGCTGTGTTTAAC 238
Query 304 CAGCATATGCTTGCAAGACCTCGCCCTCCCATGATGCTACCACCTGGAAGTATGCCTATG 363
||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 239 CAGCATATGCTCGCCAGACCTCGCCCTCCGATGATGCTACCACCTGGAGGTATGCCTATG 298
Query 364 GGTATGCGACCTCCTGTTCTGCCTAGACCCATGATGCCTCCTCAAGGTTATATGCCTCCT 423
|||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 299 GGTATGCGACCTCCTGTTCTACCTAGACCCATGATGCCTGGTCAAGGTTACATGCCTCCT 358
Query 424 CCAGG-AGTACCACAGATGATGGCACCGCCTGGTGCTCCTCTACCTCCACCTCCACAAAA 482
| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 359 C-AGGGAGTGCCACAGATGATGGCACCACCTGGTGCTCCTCTACCTCCACCTCCACAAAA 417
Query 483 TGGTATTCTGAGGCCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACC 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGGTATTCTGAGGCCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACC 474
Score = 387 bits (209), Expect = 1e-106
Identities = 219/224 (98%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 535 CCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACCTCCCAATTATAATGGA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 CCACCAGGAATGGCTCCCATACCAGGTCAAGGTGGCGGACCACCTCCCAATTATAATGGA 490
Query 595 CTACCTCCTCCTCCTCCTTATCATACAAATCCAGCTGCTCCACCAAGTGGTAATTTCAAC 654
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 491 CTACCTCCTCCTCCTCCTTATCATACAAATCCTGCTGTTCCACCAAGTGGTAGTTTCAAC 550
Query 655 AATCCAAACCTCAACAATCCGAATCCCAGTGCTGAATCTCCTGAAAGCAATGAGTAGAGT 714
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 551 AATCCGAACCTCAACAATCCGAACCCCAGTGCTGAATCTCCTGAAAGCAATGAGTAGAGT 610
Query 715 TAGTAGGTCTGAATGAATCATTTTTCTCCTGCCAAAAAATTCTC 758
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TAGTAGGTCTGAATGAATCATTTTTCTCCTGCCAAAAAATTCTC 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5