BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03130.1 Length=2301 Score E Sequences producing significant alignments: (Bits) Value Ahg490249 jgi|Araly1|490249|fgenesh2_kg.6__3383__AT4G03130.1 2704 0.0 > Ahg490249 jgi|Araly1|490249|fgenesh2_kg.6__3383__AT4G03130.1 Length=2289 Score = 2704 bits (1464), Expect = 0.0 Identities = 1821/1989 (92%), Gaps = 41/1989 (2%) Strand=Plus/Plus Query 238 GGTCTCGACCAAGTGGTGGTGGATGATAGT---GAT---GAT-GA--AGATGGAAGTGTC 288 ||||||||| |||||||||||||||||||| ||| ||| || ||||| ||||||| Sbjct 205 GGTCTCGACGAAGTGGTGGTGGATGATAGTGAGGATGAAGATGGAGGAGATGCAAGTGTC 264 Query 289 GCTGCTGGTGAGCCGATGTGTTTGCCGGAGCTAAGCCCGAAAGCTGGAGATATACTTTTG 348 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 265 GCTGCTGGTGAGCCGATATGTTTGCGGGAGCTAAGCCCGAAAGCTGGAGATATACTTTTG 324 Query 349 GAGTCTGATGGATCAAATGATCACGAATGTCAAACAGGCAAGCAAGAATCAAATTGTGAT 408 |||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||| Sbjct 325 GAGTCTGATGGATCGAATGATCACGAATGTCAGATAGGAAAGCAAGAATCAAATTGTGAT 384 Query 409 ACAGTGACCGGTTTCCAAGGTTCATT-GCGGATTACTGCTAGTAGCCATGGTCCAGGGCT 467 || |||||||||||||||||||| || |||||||||||||| ||| |||||||| ||||| Sbjct 385 ACTGTGACCGGTTTCCAAGGTTC-TTCGCGGATTACTGCTAATAGTCATGGTCCTGGGCT 443 Query 468 TGATTTTTTGGATTCTCAAGAACCAGGAGAGTCAACACAAGCAGATGCCCTTGGTTTTGT 527 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 444 GGAACTTTTGGATTCTCAGGAACCAGGAGAGTCAACACAAGCAGATGCCCTTGGTTTTGT 503 Query 528 TGACCACTTTTTGATGGACAAAGATCTAAATTTGTCTCCAGTTGA-TCTCCCGGTTAATA 586 || || ||| ||||||||||||||||| ||||||| |||| ||| |||||||| |||| Sbjct 504 GGATCAATTTCTGATGGACAAAGATCTAGATTTGTCCCCAG-TGACTCTCCCGGAAAATA 562 Query 587 GTTGCAGAAGGAAGTCATCTCCTGTATCAGGTGCAAAAGGATGTCAATCTCTGGCCAAAA 646 |||| |||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||| Sbjct 563 GTTGGAGAAGGAAGTCACCTCCTGTAACAGGTGCTAAAGGATGTCAATCTCTTGCCAAAA 622 Query 647 GAATTATGAGCAGAAGTCCAACCAGGAAAATGAGTGTCTTTGATTGGAGTAGTGATCAGT 706 ||| | || ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 623 AAATCAAGACCAGAAGTCCAACCAGGAAAATGAGTGTCTTTGATTGGGGTAGTGATCAGT 682 Query 707 GTGATGTGAGTGACCCTAAAACCTCTCCAGTCACTCGTGCAAGTATTACATGCTCCAAGA 766 ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 683 GTGATGTGAGTGACCCTAAAAACTCTCTAGTCACTCGTGCAAGCATTACATGCTCCAAGA 742 Query 767 TAAGAGAAGATCAGGTTGCA-G-G-TG-----ATGA-T--T-TTGGAGTGAAGAAACGAT 814 |||||| ||||| |||||| | | || |||| | | |||||||||||||| ||| Sbjct 743 GAAGAGAGGATCATGTTGCAGGTGATGATCCAATGATTGATCTTGGAGTGAAGAAAGGAT 802 Query 815 CTAGGGATCCGTGTGA-TATTAGAAAAGTCTCAAGTCATCCCACACAAAGAGTTATGAAG 873 ||| ||||| |||||| | |||||||||||||| ||||| |||||||||| ||||| || Sbjct 803 CTATGGATCTGTGTGAGGA-TAGAAAAGTCTCAACTCATCACACACAAAGATTTATGCAG 861 Query 874 AACAGTTCTGCAAAGCATC-TCAAGATGGAACAAGCATCGGGTTTGAGTGAGGGCATTAT 932 |||||||||||||| |||| | ||||||||||||||||| ||||||||| |||||||||| Sbjct 862 AACAGTTCTGCAAAACATCAT-AAGATGGAACAAGCATCAGGTTTGAGTCAGGGCATTAT 920 Query 933 GTTTATCTCACAGAAGGATGCTCAGTTGGAGGATAAGGCGCCAAAGGAGCCCTTGGAACC 992 ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| Sbjct 921 GTTTATCTCACAGAAGGATGCTCAGTTTCAGGATAAGGCATCAAAGGAGCACTTGGAACC 980 Query 993 CGAGGAAGACTTTATTGACATTGGTATTAACACTCAAATTGCTGCTGAAGCAATGAGTGC 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 981 CGAGGAAGACTTTATTGACATTGGTATTAACACTCAAATTGCTGCTGAAGCAATGAGTGC 1040 Query 1053 TTTAGTGTATGCTCCCTGTACTA-CAGAAGAAGCTTGTGAATCAGACCCAATTCCTGGGA 1111 |||||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||| Sbjct 1041 TTTAGTGTATGCTCCCTGCACTAAC-GAAGAAGCTTGTGAATCAGACCAAATTCCTGGGA 1099 Query 1112 -GTGTATCAGAAATGAGGGATCAAGTTAGTAATCTTTCTAGAAGGAACAATGATACCATT 1170 || ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1100 AGT-TATCAGAAATGAGGGATCAAGTTAGTAATTTTTCTAGAAGGAACAAGGATACCATT 1158 Query 1171 GAGGGTGAACCTGAAAGAGACAAATTGAATGGTCTGTTTAGTGCTGCTCCACACAGGGAA 1230 ||||||| ||||||||||||||| |||| | ||||| |||||||| | | ||||| |||| Sbjct 1159 GAGGGTGGACCTGAAAGAGACAACTTGAGTAGTCTGCTTAGTGCT-C-C-ACACAAGGAA 1215 Query 1231 AGAAACTCTAAGAAGAAGAGAAAATTCACCAATGAAGAGAGAACCAGAGCTAACGTCTCT 1290 | |||||||||||||||||||||||||||||| ||||||| || || | ||||||||| Sbjct 1216 ATAAACTCTAAGAAGAAGAGAAAATTCACCAAGGAAGAGA---CCGGAACAAACGTCTCT 1272 Query 1291 GTTAAAACATGTCTTCTCAACTTATGTGAATGGAGGCATCCCAGAGCCAAAAGATCACGT 1350 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1273 GTTACAACATGTCTTCTCAACTTATGTGAATGGAGGCATCCCAGGGCCAAAAGATCGCGT 1332 Query 1351 CTTATGCAAAGACATCACGTCCCACCTAGGAGATCTTGGGGTGCTAGTTTAGTTAAAGAC 1410 ||||||||||| ||||||||||||||||| ||||| ||||||| ||||| ||||||| || Sbjct 1333 CTTATGCAAAGGCATCACGTCCCACCTAGAAGATCGTGGGGTGTTAGTTCAGTTAAAAAC 1392 Query 1411 AGAAGTGAAACCAACACTTTGTCAAGCAGCTTACGAGGATCGTTAAGTGGGACAAGACAA 1470 ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| || Sbjct 1393 AGAAGTGAAACCAACACTTTGTCAAGCAGGTTACGAGTATCATTAAGTGGGACAAGAGAA 1452 Query 1471 GCCTCTTCTTGCCAATCAGGAGTCATTGACTTGAATGTTGCATATCATGCTTCTCCAAGG 1530 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| Sbjct 1453 GCCTCTTCTTGCCAATCAGGAGTCATTGACTTGAATATTGCAAATCATGCATCTCCGAGG 1512 Query 1531 AAAATATATGACGGAAGTCATGAAAGCCCTTGCAATAAAGATTTCCCCAGGTTATTCCTT 1590 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1513 AAAATATACGACGGAAGTCATGAAAGCCCTTGCAATAAAGATTTTCCCAGGTTATTCCTT 1572 Query 1591 CAGAAGGAGCTTACTACGAGCCTTGGAGGACCTGGTAAAA-TAGGTGACTTCGTGTGGAA 1649 |||||||||||||||||||| ||||||| |||||| || | ||||||||||||||||||| Sbjct 1573 CAGAAGGAGCTTACTACGAGGCTTGGAGAACCTGG-AATAGTAGGTGACTTCGTGTGGAA 1631 Query 1650 AGACTTAAGGAAACGAAGAAACTTGGCACATGTTCGAGTCTTATTCAGCCAGAATCTGGA 1709 |||| |||||| |||||||||||||||||||||||||||||| |||||||| ||| |||| Sbjct 1632 AGACCTAAGGAGACGAAGAAACTTGGCACATGTTCGAGTCTTGTTCAGCCATAATTTGGA 1691 Query 1710 TGATGAAACAGTCAAGCAGCAGAAGAAGATAATGGTTCGACTCGGAATTTCTCCGGCATC 1769 |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1692 TGATGAAACAACCAAGCAGCAGAAGAAGATAATGGTTCGACTGGGAATTTCTCCGGCATC 1751 Query 1770 TTCATCAGCAGATTCAACACATTTCATAGCAGACAGATTTGCTCGGACAAGGAATATGTT 1829 ||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1752 TTCCTCAGCAGATTCAACACATTTCATAGCCGATAGATTTGCTCGGACAAGGAATATGTT 1811 Query 1830 GGAAGCCATAGCTCTTGGTAAATTTGTTGTTACGCCTATATGGCTCGAGAGCTGTGCACA 1889 |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1812 GGAAGCCATAGCCCTTGGTAAATTTGTTGTTACGCCTCTATGGCTAGAGAGCTGTGCACA 1871 Query 1890 AACAAGATGCTTGATAGATGAGAAGAGTTACATTTTAAGGGATATCAAAAAGGAAAAAGA 1949 |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| Sbjct 1872 AACAAGATGCTTGATAGATGAGAAGAATTACATTTTGAGGGATAGCAAAAAGGAAAAAGA 1931 Query 1950 CGGGTTCTGCTTGCTTACATCTTTGGCCCGTGCGAAGCAGCATCCCCTTCTTAAGGGGTT 2009 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1932 CGGGTTCTGCATGCTTACATCTTTGGCCCGTGCGAAGCAGCATCCCCTTCTTAAGGGGTT 1991 Query 2010 TAAAGTCTGCATCACCCCCAGCATTAAACCAAGCAGAGGTATGATTACTGATTTAGTAAA 2069 |||||||||||||| |||| |||||||||||||||||||||||||||||| |||| || Sbjct 1992 AAAAGTCTGCATCACTCCCAACATTAAACCAAGCAGAGGTATGATTACTGACCTAGTGAA 2051 Query 2070 GATGACTCAAGGGCAGGTAGTGGAGGCAAGTGAGATAATTGCTGCAGAGGATAGAAACTT 2129 |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| Sbjct 2052 GATGACTCAAGGGCAGGTAGTGGAGGTACGTGAGATAATTGCTGCAAAGGATAGAAACTT 2111 Query 2130 TCCAGAAGATGTGTTGATTCTTTCTTGCAAAGAAGATCGAGATTTCTGTCTTCCTTTCGT 2189 |||||| ||| || |||||||||||||| |||| ||||| |||||||||||||||||| | Sbjct 2112 TCCAGATGATCTGATGATTCTTTCTTGCGAAGAGGATCGGGATTTCTGTCTTCCTTTCAT 2171 Query 2190 TAATCAAGG 2198 ||||||||| Sbjct 2172 TAATCAAGG 2180 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86655307375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5