BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03130.1
Length=2301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490249 jgi|Araly1|490249|fgenesh2_kg.6__3383__AT4G03130.1 2704 0.0
> Ahg490249 jgi|Araly1|490249|fgenesh2_kg.6__3383__AT4G03130.1
Length=2289
Score = 2704 bits (1464), Expect = 0.0
Identities = 1821/1989 (92%), Gaps = 41/1989 (2%)
Strand=Plus/Plus
Query 238 GGTCTCGACCAAGTGGTGGTGGATGATAGT---GAT---GAT-GA--AGATGGAAGTGTC 288
||||||||| |||||||||||||||||||| ||| ||| || ||||| |||||||
Sbjct 205 GGTCTCGACGAAGTGGTGGTGGATGATAGTGAGGATGAAGATGGAGGAGATGCAAGTGTC 264
Query 289 GCTGCTGGTGAGCCGATGTGTTTGCCGGAGCTAAGCCCGAAAGCTGGAGATATACTTTTG 348
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 265 GCTGCTGGTGAGCCGATATGTTTGCGGGAGCTAAGCCCGAAAGCTGGAGATATACTTTTG 324
Query 349 GAGTCTGATGGATCAAATGATCACGAATGTCAAACAGGCAAGCAAGAATCAAATTGTGAT 408
|||||||||||||| ||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 325 GAGTCTGATGGATCGAATGATCACGAATGTCAGATAGGAAAGCAAGAATCAAATTGTGAT 384
Query 409 ACAGTGACCGGTTTCCAAGGTTCATT-GCGGATTACTGCTAGTAGCCATGGTCCAGGGCT 467
|| |||||||||||||||||||| || |||||||||||||| ||| |||||||| |||||
Sbjct 385 ACTGTGACCGGTTTCCAAGGTTC-TTCGCGGATTACTGCTAATAGTCATGGTCCTGGGCT 443
Query 468 TGATTTTTTGGATTCTCAAGAACCAGGAGAGTCAACACAAGCAGATGCCCTTGGTTTTGT 527
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GGAACTTTTGGATTCTCAGGAACCAGGAGAGTCAACACAAGCAGATGCCCTTGGTTTTGT 503
Query 528 TGACCACTTTTTGATGGACAAAGATCTAAATTTGTCTCCAGTTGA-TCTCCCGGTTAATA 586
|| || ||| ||||||||||||||||| ||||||| |||| ||| |||||||| ||||
Sbjct 504 GGATCAATTTCTGATGGACAAAGATCTAGATTTGTCCCCAG-TGACTCTCCCGGAAAATA 562
Query 587 GTTGCAGAAGGAAGTCATCTCCTGTATCAGGTGCAAAAGGATGTCAATCTCTGGCCAAAA 646
|||| |||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 563 GTTGGAGAAGGAAGTCACCTCCTGTAACAGGTGCTAAAGGATGTCAATCTCTTGCCAAAA 622
Query 647 GAATTATGAGCAGAAGTCCAACCAGGAAAATGAGTGTCTTTGATTGGAGTAGTGATCAGT 706
||| | || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 623 AAATCAAGACCAGAAGTCCAACCAGGAAAATGAGTGTCTTTGATTGGGGTAGTGATCAGT 682
Query 707 GTGATGTGAGTGACCCTAAAACCTCTCCAGTCACTCGTGCAAGTATTACATGCTCCAAGA 766
||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 683 GTGATGTGAGTGACCCTAAAAACTCTCTAGTCACTCGTGCAAGCATTACATGCTCCAAGA 742
Query 767 TAAGAGAAGATCAGGTTGCA-G-G-TG-----ATGA-T--T-TTGGAGTGAAGAAACGAT 814
|||||| ||||| |||||| | | || |||| | | |||||||||||||| |||
Sbjct 743 GAAGAGAGGATCATGTTGCAGGTGATGATCCAATGATTGATCTTGGAGTGAAGAAAGGAT 802
Query 815 CTAGGGATCCGTGTGA-TATTAGAAAAGTCTCAAGTCATCCCACACAAAGAGTTATGAAG 873
||| ||||| |||||| | |||||||||||||| ||||| |||||||||| ||||| ||
Sbjct 803 CTATGGATCTGTGTGAGGA-TAGAAAAGTCTCAACTCATCACACACAAAGATTTATGCAG 861
Query 874 AACAGTTCTGCAAAGCATC-TCAAGATGGAACAAGCATCGGGTTTGAGTGAGGGCATTAT 932
|||||||||||||| |||| | ||||||||||||||||| ||||||||| ||||||||||
Sbjct 862 AACAGTTCTGCAAAACATCAT-AAGATGGAACAAGCATCAGGTTTGAGTCAGGGCATTAT 920
Query 933 GTTTATCTCACAGAAGGATGCTCAGTTGGAGGATAAGGCGCCAAAGGAGCCCTTGGAACC 992
||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 921 GTTTATCTCACAGAAGGATGCTCAGTTTCAGGATAAGGCATCAAAGGAGCACTTGGAACC 980
Query 993 CGAGGAAGACTTTATTGACATTGGTATTAACACTCAAATTGCTGCTGAAGCAATGAGTGC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CGAGGAAGACTTTATTGACATTGGTATTAACACTCAAATTGCTGCTGAAGCAATGAGTGC 1040
Query 1053 TTTAGTGTATGCTCCCTGTACTA-CAGAAGAAGCTTGTGAATCAGACCCAATTCCTGGGA 1111
|||||||||||||||||| |||| | |||||||||||||||||||||| |||||||||||
Sbjct 1041 TTTAGTGTATGCTCCCTGCACTAAC-GAAGAAGCTTGTGAATCAGACCAAATTCCTGGGA 1099
Query 1112 -GTGTATCAGAAATGAGGGATCAAGTTAGTAATCTTTCTAGAAGGAACAATGATACCATT 1170
|| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1100 AGT-TATCAGAAATGAGGGATCAAGTTAGTAATTTTTCTAGAAGGAACAAGGATACCATT 1158
Query 1171 GAGGGTGAACCTGAAAGAGACAAATTGAATGGTCTGTTTAGTGCTGCTCCACACAGGGAA 1230
||||||| ||||||||||||||| |||| | ||||| |||||||| | | ||||| ||||
Sbjct 1159 GAGGGTGGACCTGAAAGAGACAACTTGAGTAGTCTGCTTAGTGCT-C-C-ACACAAGGAA 1215
Query 1231 AGAAACTCTAAGAAGAAGAGAAAATTCACCAATGAAGAGAGAACCAGAGCTAACGTCTCT 1290
| |||||||||||||||||||||||||||||| ||||||| || || | |||||||||
Sbjct 1216 ATAAACTCTAAGAAGAAGAGAAAATTCACCAAGGAAGAGA---CCGGAACAAACGTCTCT 1272
Query 1291 GTTAAAACATGTCTTCTCAACTTATGTGAATGGAGGCATCCCAGAGCCAAAAGATCACGT 1350
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1273 GTTACAACATGTCTTCTCAACTTATGTGAATGGAGGCATCCCAGGGCCAAAAGATCGCGT 1332
Query 1351 CTTATGCAAAGACATCACGTCCCACCTAGGAGATCTTGGGGTGCTAGTTTAGTTAAAGAC 1410
||||||||||| ||||||||||||||||| ||||| ||||||| ||||| ||||||| ||
Sbjct 1333 CTTATGCAAAGGCATCACGTCCCACCTAGAAGATCGTGGGGTGTTAGTTCAGTTAAAAAC 1392
Query 1411 AGAAGTGAAACCAACACTTTGTCAAGCAGCTTACGAGGATCGTTAAGTGGGACAAGACAA 1470
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||
Sbjct 1393 AGAAGTGAAACCAACACTTTGTCAAGCAGGTTACGAGTATCATTAAGTGGGACAAGAGAA 1452
Query 1471 GCCTCTTCTTGCCAATCAGGAGTCATTGACTTGAATGTTGCATATCATGCTTCTCCAAGG 1530
|||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||
Sbjct 1453 GCCTCTTCTTGCCAATCAGGAGTCATTGACTTGAATATTGCAAATCATGCATCTCCGAGG 1512
Query 1531 AAAATATATGACGGAAGTCATGAAAGCCCTTGCAATAAAGATTTCCCCAGGTTATTCCTT 1590
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1513 AAAATATACGACGGAAGTCATGAAAGCCCTTGCAATAAAGATTTTCCCAGGTTATTCCTT 1572
Query 1591 CAGAAGGAGCTTACTACGAGCCTTGGAGGACCTGGTAAAA-TAGGTGACTTCGTGTGGAA 1649
|||||||||||||||||||| ||||||| |||||| || | |||||||||||||||||||
Sbjct 1573 CAGAAGGAGCTTACTACGAGGCTTGGAGAACCTGG-AATAGTAGGTGACTTCGTGTGGAA 1631
Query 1650 AGACTTAAGGAAACGAAGAAACTTGGCACATGTTCGAGTCTTATTCAGCCAGAATCTGGA 1709
|||| |||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 1632 AGACCTAAGGAGACGAAGAAACTTGGCACATGTTCGAGTCTTGTTCAGCCATAATTTGGA 1691
Query 1710 TGATGAAACAGTCAAGCAGCAGAAGAAGATAATGGTTCGACTCGGAATTTCTCCGGCATC 1769
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1692 TGATGAAACAACCAAGCAGCAGAAGAAGATAATGGTTCGACTGGGAATTTCTCCGGCATC 1751
Query 1770 TTCATCAGCAGATTCAACACATTTCATAGCAGACAGATTTGCTCGGACAAGGAATATGTT 1829
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1752 TTCCTCAGCAGATTCAACACATTTCATAGCCGATAGATTTGCTCGGACAAGGAATATGTT 1811
Query 1830 GGAAGCCATAGCTCTTGGTAAATTTGTTGTTACGCCTATATGGCTCGAGAGCTGTGCACA 1889
|||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1812 GGAAGCCATAGCCCTTGGTAAATTTGTTGTTACGCCTCTATGGCTAGAGAGCTGTGCACA 1871
Query 1890 AACAAGATGCTTGATAGATGAGAAGAGTTACATTTTAAGGGATATCAAAAAGGAAAAAGA 1949
|||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1872 AACAAGATGCTTGATAGATGAGAAGAATTACATTTTGAGGGATAGCAAAAAGGAAAAAGA 1931
Query 1950 CGGGTTCTGCTTGCTTACATCTTTGGCCCGTGCGAAGCAGCATCCCCTTCTTAAGGGGTT 2009
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1932 CGGGTTCTGCATGCTTACATCTTTGGCCCGTGCGAAGCAGCATCCCCTTCTTAAGGGGTT 1991
Query 2010 TAAAGTCTGCATCACCCCCAGCATTAAACCAAGCAGAGGTATGATTACTGATTTAGTAAA 2069
|||||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 1992 AAAAGTCTGCATCACTCCCAACATTAAACCAAGCAGAGGTATGATTACTGACCTAGTGAA 2051
Query 2070 GATGACTCAAGGGCAGGTAGTGGAGGCAAGTGAGATAATTGCTGCAGAGGATAGAAACTT 2129
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 2052 GATGACTCAAGGGCAGGTAGTGGAGGTACGTGAGATAATTGCTGCAAAGGATAGAAACTT 2111
Query 2130 TCCAGAAGATGTGTTGATTCTTTCTTGCAAAGAAGATCGAGATTTCTGTCTTCCTTTCGT 2189
|||||| ||| || |||||||||||||| |||| ||||| |||||||||||||||||| |
Sbjct 2112 TCCAGATGATCTGATGATTCTTTCTTGCGAAGAGGATCGGGATTTCTGTCTTCCTTTCAT 2171
Query 2190 TAATCAAGG 2198
|||||||||
Sbjct 2172 TAATCAAGG 2180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86655307375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5