BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03140.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895676 jgi|Araly1|895676|Al_scaffold_0006_3672 1458 0.0
Ahg943400 jgi|Araly1|943400|scaffold_603944.1 189 4e-47
> Ahg895676 jgi|Araly1|895676|Al_scaffold_0006_3672
Length=903
Score = 1458 bits (789), Expect = 0.0
Identities = 867/905 (96%), Gaps = 4/905 (0%)
Strand=Plus/Plus
Query 200 ATGTTTCAGATTGGAAAAAACGCATTAT-TCAAGAATGTGAGCAAGAACTTCCTTATCAA 258
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 ATGTTTCAGATTGGAAAAAACGCATTATAT-AAGAATGTGAGCAAGAACTTCCTTATCAA 59
Query 259 GGGAATATCCTCATCCTCATCATCTCATTCAACTTCAAGGAAGCTAGAAGGTAAAGTAGC 318
||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 CGGAATCTCCTCTTCCGCATCATCTCATTCAAGTTCAAGGAAGCTAGAAGGTAAAGTAGC 119
Query 319 ACTCATCACTGGAGGAGCAAGTGGGATTGGCAAAGCAACAGCCGGAAAATTCATCAGTCA 378
||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 120 ACTCATCACAGGAGGAGCAAGTGGGATTGGCAAAGCAACCGCCGGAGAATTCATCAGCCA 179
Query 379 TGGAGCCAAAGTTATCATTGCCGATATCCAACCGCAGATTGGGCGAGAAACCGAGCAAGA 438
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 180 TGGAGCCAAAGTTATCATTGCCGATATCCAACCACAGATTGGGCGAGAAACCGCGCAAGA 239
Query 439 ACTCGGTCCCAGTTG-TGCTTACTTCCCATGCGATGTGACCAAAGAATCAGACATTGCTA 497
|||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 ACTCGGTCCCAG-TGCTGCTTATTTCCCATGCGATGTGACCAAAGAATCAGACATTGCTA 298
Query 498 ACGCAGTTGACTTCGCTGTCTCGCTCCATACAAAGCTCGACATTATGTACAACAATGCTG 557
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 ACGCAGTTGACTTTGCTGTCTCGATCCATACAAAGCTCGACATTATGTACAACAATGCTG 358
Query 558 GTATTCCCTGCAAAACGCCTCCTAGTATCGTTGATCTTGATCTCAATGTTTTCGACAAGG 617
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 GTATTCCCTGCAAAACGCCTCCTAGTATCGTTGATCTTGATCTCAATGTTTTTGACAAGG 418
Query 618 TAATCAACACAAATGTCCGTGGAGTCATGGCAGGAATCAAACATGCTGCTCGTGTGATGA 677
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 TAATCAACACAAATGTCCGTGGAGTCATCGCAGGAATCAAACATGCTGCTCGTGTGATGA 478
Query 678 TCCCGCGTAACTCTGGATCCATCATTTGTGCAGGGAGTGTCACGGGGATGATGGGCGGTT 737
|||| | ||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 TCCCACATAATTCCGGATCCATCATTTGCGCAGGGAGTGTCACGGGGATGATGGGCGGTT 538
Query 738 TAGCCCAACATACTTACAGCGTCTCAAAATCCGCTGTTATCGGAATTGTAAGATCAACAG 797
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TAGCACAACATACTTACAGCGTCTCAAAATCCGCTGTTATCGGAATTGTAAGATCAACAG 598
Query 798 CTTCAGAACTATGCAAGCACAGGATCCGGGTCAACTGCATTTCTCCTTTTGCGATCACAA 857
||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||
Sbjct 599 CTTCAGAACTATGCAAGCACAAGATCAGGGTCAACTGCATCTCTCCTTTTGCAATCACAA 658
Query 858 CATCATTCGTGATGGATGAGATGCGACAGATTTACCCCGGTGTTGATGACTCAAGGCTGA 917
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CGTCATTCGTGATGGATGAGATGCGACAGATTTACCCCGGTGTTGATGACTCAAGGCTGA 718
Query 918 TCCAGATAGTGCAGAGTACAGGAGTGTTAAATGGAGAGGTTTGTGAACCAACCGATGTAG 977
|||||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 719 TCCAGATAGTGCAGAGCACAGGAGTGTTAGACGGAGAGGTTTGTGAACCAACCGACGTAG 778
Query 978 CTAATGCAGCGGTGTATCTCGCTTCCGATGATTCAAAGTATGTAAATGGGCATAATCTGG 1037
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTAATGCAGCGGTTTATCTTGCTTCCGATGATTCAAAGTATGTAAATGGGCATAATCTGG 838
Query 1038 TGGTAGATGGAGGATTCACAACTGTAAAGACGTTAGATTTCCCTGCACCTGACCAAGTGA 1097
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGTAGATGGAGGATTCACAAGTGTAAAGACGTTAGATTTCCCTGCACCTGACCAAGTGA 898
Query 1098 AGTAA 1102
|||||
Sbjct 899 AGTAA 903
> Ahg943400 jgi|Araly1|943400|scaffold_603944.1
Length=566
Score = 189 bits (102), Expect = 4e-47
Identities = 124/134 (93%), Gaps = 3/134 (2%)
Strand=Plus/Minus
Query 1150 ACTAGACT-GCACTAGACTAGACTAGACTAGGCCGGTTTCTATTCTGTCAACAATCAAAT 1208
|||||||| | | | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 566 ACTAGACTAG-AGTCG-CTAGACTAGAGTAGGCCGGTTTCTATTCTGTCAACAATCAAAT 509
Query 1209 TTATAGCTGCATTAGCGGATGTGAAAGCTCCATGGAAGCTTTCTTGGTATGAAATGGAAG 1268
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 508 TTATAGCCGCATTTGCGGATGTGAAAGCTCCATGGAAGCTTTCTTGGTATGAAATTGAGG 449
Query 1269 TTAAATCTTGAGCC 1282
||||||||||||||
Sbjct 448 TTAAATCTTGAGCC 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5