BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03150.1

Length=720
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943400 jgi|Araly1|943400|scaffold_603944.1                        708    0.0  
  Ahg895676 jgi|Araly1|895676|Al_scaffold_0006_3672                   86.1    3e-16


> Ahg943400 jgi|Araly1|943400|scaffold_603944.1
Length=566

 Score =  708 bits (383),  Expect = 0.0
 Identities = 443/471 (94%), Gaps = 7/471 (1%)
 Strand=Plus/Plus

Query  157  TTTCCGGCGACGATTCGGAGAAGATCAGTCAGCTTTCCGATAACATCTGCGCCGAAATTT  216
            |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct  100  TTTCCGGCGACGATTCGGAGAAGACCAGTCAGCTTTCCGATAACATCGGCGCCGAAATTT  159

Query  217  CCGTCTTTGAAACTCCA-AAAGTCTCAATCGTCGATCCATG-AAGGAGAAGAAGACTCAG  274
            |||||||||||||| || |||||||||||| |||| ||||| |||| |||| ||||||||
Sbjct  160  CCGTCTTTGAAACT-CATAAAGTCTCAATCTTCGACCCATGAAAGG-GAAGGAGACTCAG  217

Query  275  AATCAGCCGTACAAGCCCTCACGATTCCAGAAGAGTGGTTGCTCCCTTCTAGAGCCATTG  334
            ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct  218  AATCATCCGTACAAGCCCTCACGATTCCAAAAGAGTGGTTGCTCCCTTCTAGGGCCATTG  277

Query  335  AGGAATCTGAATGGTTGAGAGTAACTTTGCACAAATGGTTGGATGATGAGTATTGCCCTG  394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  278  AGGAATCTGAATGGTTGAGAGTAACTTTGCACAAATGGTTGGATGATGAGTATTGCCCTG  337

Query  395  AGCCAACCAATGTGGAGATCAGTGAAGTAGCTGCAAAGTCTTACTATAGTTCACTGCTAG  454
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
Sbjct  338  AGCCAACCAATGTGGAGATCAGTGAAGTAGCTGCAAAGTCATACTACAGTTCATTGCTTG  397

Query  455  AGAAAGAAAGTGACATGGGAGAGATTTTGTTGAAGATGGCTCAAGATTTAACTTCCATTT  514
            ||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct  398  AGAAAGAAACTGACATTGGAGAGATTTTGTTGAAGATGGCTCAAGATTTAACCTCAATTT  457

Query  515  CATACCAAGAAAGCTTCCATGGAGCTTTCACATCCGCTAATGCAGCTATAAATTTGATTG  574
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  458  CATACCAAGAAAGCTTCCATGGAGCTTTCACATCCGCAAATGCGGCTATAAATTTGATTG  517

Query  575  TTGACAGAATAGAAACCGGCCTAGTCTAGTCTAGTCTAGTGC-AGTCTAGT  624
            ||||||||||||||||||||||| |||||||||| | | | | ||||||||
Sbjct  518  TTGACAGAATAGAAACCGGCCTACTCTAGTCTAG-CGACT-CTAGTCTAGT  566


> Ahg895676 jgi|Araly1|895676|Al_scaffold_0006_3672
Length=903

 Score = 86.1 bits (46),  Expect = 3e-16
 Identities = 48/49 (98%), Gaps = 0/49 (0%)
 Strand=Plus/Minus

Query  672  TTACTTCACTTGGTCAGGTGCAGGGAAATCTAACGTCTTTACAGTTGTG  720
            ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  903  TTACTTCACTTGGTCAGGTGCAGGGAAATCTAACGTCTTTACACTTGTG  855



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26495427315


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5