BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03153.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490246 jgi|Araly1|490246|fgenesh2_kg.6__3380__AT4G03153.1 220 8e-57
> Ahg490246 jgi|Araly1|490246|fgenesh2_kg.6__3380__AT4G03153.1
Length=510
Score = 220 bits (119), Expect = 8e-57
Identities = 170/193 (88%), Gaps = 10/193 (5%)
Strand=Plus/Plus
Query 178 GAGAATAAGCCAAAGCTCATTG-AATTGCTCGAGGAATTATACCGTTCACATCGCTCTTT 236
|||||||||||||||||||||| | || | ||||| |||||||| || |||||||| ||
Sbjct 124 GAGAATAAGCCAAAGCTCATTGCCA-TGGTAGAGGATTTATACCGCTCGCATCGCTCATT 182
Query 237 GGCGCAGAAGCATGATCTCTTGATCAAAACCTCTTCTCTGAATTCGGACAGC-CA----T 291
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 183 GGCGCAGAAGCATGATCTCTTGATCAAAACCTCTTCTCTGAATTCGGACAGCACAGCCAT 242
Query 292 AACTCATCATCATGCGACGAGATCCGATCGGAAGTGTGTGAAGAAACAGAGTCGTCTGAT 351
||||||||| | ||||||||| |||| |||||| ||||||||||||||||||| | |||
Sbjct 243 AACTCATCAACCTGCGACGAGCTCCGGTCGGAATTGTGTGAAGAAACAGAGTC-T--GAT 299
Query 352 GTTGAAGCTGAAA 364
| |||||||||||
Sbjct 300 GGTGAAGCTGAAA 312
Score = 137 bits (74), Expect = 8e-32
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 6 TGAGACATCAAAATGGTGGTGGATTGGTGCAAATCACAACACATCAAATTCCTCGCCTTG 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2 TGAGACATCAAAATGGTGGTGGATTGGTGCAAATCACAACACATCAAATTCCTCTCCTTG 61
Query 66 GCTTAACTCTACTCTCTCTG 85
||||||| ||||||||||||
Sbjct 62 GCTTAACACTACTCTCTCTG 81
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5