BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03160.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321705 jgi|Araly1|321705|fgenesh1_pm.C_scaffold_4001762           534    2e-151


> Ahg321705 jgi|Araly1|321705|fgenesh1_pm.C_scaffold_4001762
Length=570

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 427/492 (87%), Gaps = 15/492 (3%)
 Strand=Plus/Plus

Query  98   aagaagaagaatatgatgaagaaTCCGTATGTGAGGATGATTTGGAAGT-AAAATCGTGT  156
            ||||||||||| | || |||||||||||| |||||||||| |||||||| |||||  | |
Sbjct  77   AAGAAGAAGAAGAAGAAGAAGAATCCGTAAGTGAGGATGAGTTGGAAGTGAAAAT-TTCT  135

Query  157  ATGCAAACAAATGAAAATAAGGGT---AAGAAGAGAAAAGTCGCTGAGCAGTTGATGGAT  213
            |  |||||| ||||||| ||||||   ||||||||||||||||| |||||||||| || |
Sbjct  136  AACCAAACATATGAAAAGAAGGGTAAAAAGAAGAGAAAAGTCGCAGAGCAGTTGACGGGT  195

Query  214  AGCGACGTGAAGGACAACCAATACAGGCTCATGTTAGGGAAGGAGCCGGTGAAAAAGATG  273
            ||||||||||||||||| || | ||||||||||||||||||||||| |||||||||||||
Sbjct  196  AGCGACGTGAAGGACAATCAGTGCAGGCTCATGTTAGGGAAGGAGCAGGTGAAAAAGATG  255

Query  274  AT-G--GATGCTCTGGGAAAAACAGAGAAACTTGGGACTAAAGGGCTTAATGTTTCGGTG  330
            || |  |||| |||||||||| ||||||||||||||| | | ||||  || || ||||||
Sbjct  256  ATGGTTGATGTTCTGGGAAAAGCAGAGAAACTTGGGATTCATGGGCAAAAGGTCTCGGTG  315

Query  331  TATGGACCAAACGGAGAGAATCATAAGATGGTGTTGAAGATATGGATTAAGGGCACACCT  390
            ||||||||||| ||||||| |||| ||||||| || ||||| ||||  |||| |||||||
Sbjct  316  TATGGACCAAAGGGAGAGATTCATGAGATGGTTTTCAAGATGTGGAAGAAGGACACACCT  375

Query  391  GTTTTGA--CGTCG--GGATGGAAGAATTTCGTGAAGAGTTATAAGCTCGAGAAACATGT  446
             ||||||   || |  ||||||||||||||||||||||  |||||||||||||| |||||
Sbjct  376  ATTTTGATGAGT-GTTGGATGGAAGAATTTCGTGAAGAAATATAAGCTCGAGAAGCATGT  434

Query  447  TGATTTTCTCACTATTTGGATGTTTAGGCACAAAAAGACTCGGGAGATTTGCTTCGCTAT  506
            |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  435  TGATTTTCTCACTATTTGGATGTTTAGGCACAAAGAGACTCGGAAGATTTGCTTCGCTAT  494

Query  507  TGATTCCACTAGGTTTCCTGTAAAGGGTACGCTGAGTA-AAAGGATCTTGCAGGAAGTCT  565
            ||||||||||||| ||||||||||||||| |||||||  |||| |||||| | | || ||
Sbjct  495  TGATTCCACTAGGATTCCTGTAAAGGGTATGCTGAGTCCAAAG-ATCTTGAACGCAGCCT  553

Query  566  TCAAGAATCCAT  577
            ||||||||||||
Sbjct  554  TCAAGAATCCAT  565



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5