BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03175.1

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483055 jgi|Araly1|483055|fgenesh2_kg.4__2115__AT2G40120.1         682    0.0  
  Ahg473791 jgi|Araly1|473791|fgenesh2_kg.1__3745__AT4G03175.1         270    5e-72


> Ahg483055 jgi|Araly1|483055|fgenesh2_kg.4__2115__AT2G40120.1
Length=2175

 Score =  682 bits (369),  Expect = 0.0
 Identities = 399/414 (96%), Gaps = 0/414 (0%)
 Strand=Plus/Plus

Query  7     GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAAGATCGATTTGTGGTCTCTTGGG  66
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  1608  GCTCCTGAAGTGATTCTCGGGCTTCCATATGATGAAAAGATTGATTTGTGGTCTCTTGGG  1667

Query  67    TGTATTGTAGCAGAACTCTGCTCTGGTGAGGTTCTGTTTCCAAACGAAGCAGTAGCGATG  126
             |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1668  TGTATTTTAGCAGAGCTCTGCTCTGGTGAGGTTCTGTTTCCAAATGAAGCAGTAGCGATG  1727

Query  127   ATATTGGCTAGGATTGTTGCAGTTTTAGGTCCTATCGAAACAGAGATGCTAAAGAAAGGT  186
             ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct  1728  ATATTGGCTCGGATTGTTGCAGTTTTAGGTCCTATAGAAACAGAGATGCTAGAGAAAGGT  1787

Query  187   CAAGAGACACATAAATACTTCACCAAAGAGTATGATCTCTACCACTTAAACGAGGAGAGC  246
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1788  CAAGAGACACATAAATACTTCACTAAAGAGTATGATCTCTACCACTTAAACGAGGAGAGC  1847

Query  247   AATGAGATTGAATACATAATCACAGAAGAATCAAGCTTGGAAGAACAACTACAAGTTAGT  306
             ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct  1848  AATGAGATTGAATACATAATCACAGAAGAATCATGCTTGGAAGAACAATTACATGTTAGT  1907

Query  307   GATGAATTGTTCTTAGATTTTGTAAGGACTCTACTTGAGATCAATCCTTTGAGACGTCCA  366
             |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct  1908  GATGAATTGTTCTTAGATTTTGTAAGGAGTCTACTTGAGATCAATCCATTGAGACGTCCA  1967

Query  367   ACAGCTCTCGAGGCACTTAACCACCCTTGGCTCTCTTCTTCTTCTTACAACTGA  420
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1968  ACAGCTCTCGAGGCACTTAACCACCCTTGGCTCTCTTCTTCTTCTTACAATTGA  2021


> Ahg473791 jgi|Araly1|473791|fgenesh2_kg.1__3745__AT4G03175.1
Length=486

 Score =  270 bits (146),  Expect = 5e-72
 Identities = 166/176 (94%), Gaps = 0/176 (0%)
 Strand=Plus/Plus

Query  241  GAGAGCAATGAGATTGAATACATAATCACAGAAGAATCAAGCTTGGAAGAACAACTACAA  300
            ||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| 
Sbjct  307  GAGAGCAATAAGATTGAATACATAATCACAGAAGAATTATGCTTGGAAGAACAATTACAT  366

Query  301  GTTAGTGATGAATTGTTCTTAGATTTTGTAAGGACTCTACTTGAGATCAATCCTTTGAGA  360
            ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct  367  GTTAGTGATGAATTGTTCTTAGATTTTGTAAAGAGTCTACTTGAGATCAATCCATTGAGA  426

Query  361  CGTCCAACAGCTCTCGAGGCACTTAACCACCCTTGGCTCTCTTCTTCTTCTTACAA  416
            ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  427  CGTCCAACAGCTCTCGAGGTACTTAACCACCCTTGGCTCTCTTCCTCTTCTTACAA  482


 Score =  176 bits (95),  Expect = 1e-43
 Identities = 115/125 (92%), Gaps = 0/125 (0%)
 Strand=Plus/Plus

Query  116  CAGTAGCGATGATATTGGCTAGGATTGTTGCAGTTTTAGGTCCTATCGAAACAGAGATGC  175
            |||||||||||||||||| | |||||||| | |||||||||| | | |||||||||||||
Sbjct  128  CAGTAGCGATGATATTGGTTCGGATTGTTACGGTTTTAGGTCTTCTAGAAACAGAGATGC  187

Query  176  TAAAGAAAGGTCAAGAGACACATAAATACTTCACCAAAGAGTATGATCTCTACCACTTAA  235
            || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  188  TAGAGAAAGGTCAAGAGACACATAAATACTTCACTAAAGAGTATGATCTCTACCACTTAA  247

Query  236  ACGAG  240
            | |||
Sbjct  248  ATGAG  252


 Score = 95.3 bits (51),  Expect = 3e-19
 Identities = 58/61 (95%), Gaps = 1/61 (2%)
 Strand=Plus/Plus

Query  7   GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAAGATCGATTTGTGGTCTCTTGGG  66
           |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct  1   GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAA-ATTGATTTGTGGTCTTTTGGG  59

Query  67  T  67
           |
Sbjct  60  T  60



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15109613244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5