BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03180.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943398 jgi|Araly1|943398|scaffold_603942.1 843 0.0
> Ahg943398 jgi|Araly1|943398|scaffold_603942.1
Length=596
Score = 843 bits (456), Expect = 0.0
Identities = 528/563 (94%), Gaps = 3/563 (1%)
Strand=Plus/Plus
Query 164 CTCGCGATAATGAAGAAATTCTATCAAAATGCTGATCATGAGACTGATAAATCCAAATCG 223
||||||| ||||||||||||||||||||| ||| ||||| ||||||| ||||||||||
Sbjct 12 CTCGCGACAATGAAGAAATTCTATCAAAAAAATGAGCATGATACTGATAGATCCAAATCG 71
Query 224 GCGGAGACGAAGAAGAGGAAGAACATGAGGAGATTAGGAGGCGGTGGTCTTTCTCTCCAA 283
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 72 ACGGAGACGAAGAAGAGGAAGAACATGAAGAGATTGGGAGGCGGTGGTCTTTCTCTCCAA 131
Query 284 ACTTTTGCCAACATGAAATCGGAAAATAATCGCTATAACCCTTCTTTGATCAAAAAGCAA 343
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 132 ACTTTTGCCAACATGAAATCGGAAAACAATCGCTATAACCCTTCTTTGATCAAAAGGCAA 191
Query 344 AAAGAGTTCTACAAGAATGCAAAGTATGTGAGCAAGTTTAGGAAGTCGTTGAAGCAGCAG 403
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 192 AAAGAGTTCTACAAGAATGCAAAGTATGTGAGCAAGTTTAGGAAGTCGGTGAAGCAGCAG 251
Query 404 AACATTCCTGATAAGAATGAGACTGGAGAGACTAGTAAGGTAGGtgatgatgatgatgat 463
|||||| ||| ||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 252 AACATTGATGACAAGAATGAGACTGGAGAGAGTAGTAAGGTA---GATGATGACGATGAT 308
Query 464 gatAAGCGGAAGGGTAAATCTAATAAGAGAATTGGTGTAGAGGATTTGTACAAGCAGACa 523
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GATAAGCAGAAGGGTAAATCTAATAAGAGAATTGGTGTAGAGGATTTGTACAAGCAGACA 368
Query 524 agagaagagatggagagagtaaggaaggagagagagGCAATGTTTCAGGCGAAGAAGGAA 583
|||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 369 AGAGAAGAGATGGAGAAAGTAAGGAAGGAGAGAGAGGCTACGTTTCAGGCGAAGAAGGAA 428
Query 584 GCGAAAGAAGAGGCTGAATCTAGGAGGAAAGAAGCAAAGGGGAAAATGTTGAGGAAGACT 643
|||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||
Sbjct 429 GCGAAAGAAGAGGCTGAATCCAGGAGGAAAGTAGCAAAGGGGAAAATGATGAGAAAGACT 488
Query 644 CGACATGGTCAGCCTGTAATGAAATACAGAATTGAGCATCTTCTTGAATCCATCAAGAAA 703
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 489 CGACATGGTCAGCCTGTAATGAAATACAGAATAGAACATCTTCTTGAATCCATCAAGAAA 548
Query 704 TCTGCCGGAATCAACGAAATCGC 726
||||| |||||| ||| || |||
Sbjct 549 TCTGCTGGAATCGACGGAAGCGC 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5