BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03190.1
Length=2061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490244 jgi|Araly1|490244|fgenesh2_kg.6__3378__AT4G03190.1 3136 0.0
> Ahg490244 jgi|Araly1|490244|fgenesh2_kg.6__3378__AT4G03190.1
Length=1966
Score = 3136 bits (1698), Expect = 0.0
Identities = 1891/1982 (95%), Gaps = 22/1982 (1%)
Strand=Plus/Plus
Query 25 AAATCTCAAACC-TTTTTCTTCATTTCTTCCCCCctctctctctctcACTCTGTTTCTGA 83
|||||||||||| ||||| |||||||||| ||||||||| ||||| ||||||
Sbjct 1 AAATCTCAAACCTTTTTTTTTCATTTCTT------GATCTCTCTCT--CTCTG-TTCTGA 51
Query 84 TGGGTCTCCGATTCCCACCTAAGGTGT-TGGAACATATCCTCTCCTTCATTGATTCCAAC 142
||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 52 TGGGTCTCCGATTACCATCTAAGGT-TCTGGAACATATCCTCTCCTTCATTGATTCCAAC 110
Query 143 GAGGACCGGAACTCTGTTTCTCTGGTCTGCAAGTCATGGTTTGAGACAGAACGGAAGACT 202
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 111 GAGGACCGGAACTCTGTTTCTCTGGTCTGCAAGTCATGGTTCGAGACAGAGCGGAAGACT 170
Query 203 AGGAAGCGAGTCTTTGTCGGAAACTGTTACGCGGTCAGTCCTGCTGCGGTTAC-ACGACG 261
|||||||| |||||||||||||||||||||||||| ||||||||||| ||| | | | ||
Sbjct 171 AGGAAGCGGGTCTTTGTCGGAAACTGTTACGCGGTTAGTCCTGCTGCAGTTGCAAAG-CG 229
Query 262 GTTCCCGGAGATGAGATCTTTGACTTTGAAGGGGAAGCCACACTTCGCTGACTATAATCT 321
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 230 GTTCCCGGAGATGAGATCTTTGACTTTGAAGGGGAAGCCACACTTCGCCGACTATAATTT 289
Query 322 CGTTCCTGATGGTTGGGGTGGTTATGCTTGGCCGTGGATTGAAGCTATGGCGGCGAAAAG 381
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 290 GGTTCCTGATGGTTGGGGTGGTTATGCTTGGCCGTGGATTGAAGCCATGGCGGCGAAATG 349
Query 382 TTCGTCTCTTGAAGAGATCAGAATGAAGAGGATGGTGGTGACTGATGAGTGCTTAGAGAA 441
|||||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||| ||
Sbjct 350 TTCGTCTCTTGAGGAGATCAGATTGAAGAGAATGGTGGTGACTGATGAATGCTTAGAAAA 409
Query 442 AATTGCTGCTTCGTTTAAGGATTTTAAAGTCCTTGTGTTGACTTCTTGTGAAGGTTTCTC 501
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 410 AATTGCTGCTTCGTTTAAGGATTTTAAAGTCCTTGTATTGACTTCTTGTGAAGGTTTCTC 469
Query 502 TACTGATGGTATCGCTGCTATTGCAGCTACTTGCAGGAACTTGAGAGTGTTGGAACTACG 561
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 470 TACTGATGGTATCGCTGCTATTGCAGCAACTTGCAGAAACTTGAGAGTGTTGGAACTACG 529
Query 562 AGAGTGTATTGTTGAAGATTTAGGAGGAGATTGGCTTAGCTATTTTCCAGAGAGTTCAAC 621
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 530 AGAGTGTATTGTTGAAGATCTAGGAGGAGATTGGCTTAGCTATTTTCCAGAGACTTCAAC 589
Query 622 TTCTTTGGTCTCTCTTGACTTCTCTTGTTTAGATTCTGAGGTTAAAATCTCGGATTTAGA 681
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 590 TTCTCTGGTCTCTCTTGACTTCTCTTGTTTAGATTCTGAGGTTAAAATCTCGGACTTAGA 649
Query 682 GCGTCTTGTGAGCAGATCTCCAAACTTGAAGTCTTTGAAGTTGAATCCAGCTGTGACTCT 741
|||||| |||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 650 GCGTCTCGTGAGCAGATCTCCAAACCTGAAGTCTCTAAAGTTGAATCCAGCTGTGACTCT 709
Query 742 AGATGGACTCGTTAGCTTACTTCGTTGTGCTCCACAACTGACTGAGCTCGGCACAGGTTC 801
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 710 AGATGGACTTGTTAGCTTACTTCGTCGTGCTCCACAACTGACTGAGCTCGGCACAGGTTC 769
Query 802 TTTCGCAGCTCAATTGAAACCTGAAGCGTTTTCAAAGTTATCAGAAGCTTTTTCAAACTG 861
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTTCGCAGCTCAACTGAAACCAGAAGCGTTTTCAAAGTTATCAGAAGCTTTTTCAAACTG 829
Query 862 TAAGCAACTTCAGAGCTTATCTGGTCTCTGGGATGTCCTCCCTGAATATCTTCCAGCTCT 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TAAGCAACTTCAGAGCTTATCTGGTCTCTGGGATGTCCTCCCTGAATATCTTCCAGCTCT 889
Query 922 TTATTCTGTCTGTCCTGGTCTTACCTCGTTGAACTTGAGCTACGCTACTGTCCGAATGCC 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TTATTCTGTCTGTCCTGGTCTTACCTCGTTGAACTTGAGCTACGCTACTGTCCGAATGCC 949
Query 982 TGATCTTGTTGAGCTTCTTAGGCGATGCTCGAAACTGCAGAAGCTATGGGTGATGGACTT 1041
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TGATCTTGTCGAGCTTCTTAGGCGATGCTCGAAACTGCAGAAGCTATGGGTGATGGACTT 1009
Query 1042 GATTGAGGACAAAGGTCTTGAAGCTGTTGCCTCATATTGCAAGGAACTGCGAGAACTGAG 1101
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1010 GATAGAGGACAAAGGTCTTGAAGCTGTTGCCTCCTATTGCAAGGAACTGCGAGAACTGAG 1069
Query 1102 GGTGTTTCCATCTGAGCCAGATCTTGATGCAA-CCAACATACCTCTGACGGAACAAGGCC 1160
|||||||||||||| ||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1070 GGTGTTTCCATCTGCGCCAGATCTCGATG-AAGCCAACATACCTCTGACGGAACAAGGCC 1128
Query 1161 TGGTCTTTGTGTCTAAAGGCTGTCGAAAGCTTGAGTCTGTTCTCTACTTCTGTGTCCAGT 1220
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1129 TGGTCTTTGTGTCTAAAGGCTGTCGAAAGCTGGAGTCTGTTCTCTACTTCTGTGTCCAGT 1188
Query 1221 TCACAAACGCAGCTTTGTTTACCATAGCAAGAAAACGTCCGAATCTCAAGTGCTTCCGTC 1280
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TCACAAACGCAGCTTTGCTTACCATAGCAAGAAAACGTCCGAATCTCAAGTGCTTCCGTC 1248
Query 1281 TCTGTGTGATAGAGCCATTTGCTCCTGATTACAAAACAAATGAGCCACTTGATAAAGGAT 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TCTGTGTGATAGAGCCATTTGCTCCTGATTACAAAACAAATGAGCCACTTGATAAAGGAT 1308
Query 1341 TCAAAGCCATAGCTGAGGGATGCAGGGATCTTCGACGGCTCTCCGTCTCTGGTCTTCTCT 1400
||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1309 TCAAAGCAATAGCTGAGGGATGCAAGGATCTTCGACGGCTCTCCGTCTCTGGTCTCCTCT 1368
Query 1401 CTGACAAGGCCTTCAAATACATTGGGAAACATGCCAAGAAGGTTAGGATGCTATCAATAG 1460
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1369 CCGACAAGGCCTTCAAATACATTGGGAAACATGCAAAGAAGGTAAGGATGCTATCAATAG 1428
Query 1461 CATTTGCTGGGGACAGTGATTTGATGCTTCATCACTTGTTGTCGGGCTGTGAGAGTTTAA 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 CATTTGCTGGGGACAGTGATTTGATGCTTCATCACTTGTTGTCGGGCTGTGAGAGTTTAA 1488
Query 1521 AGAAGCTTGAGATACGAGACTGCCCTTTTGGAGACACTGCACTACTGGAGCACGCTGCCA 1580
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1489 AGAAGCTTGAGATAAGAGATTGCCCTTTCGGAGACACTGCACTACTGGAGCACGCTGCCA 1548
Query 1581 AGCTAGAGACCATGCGATCCCTTTGGATGTCATCTTGCTTTGTAAGTTTTGGTGCTTGCA 1640
| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1549 AACTGGAAACCATGCGATCCCTTTGGATGTCGTCTTGCTTTGTAAGTTTTGGTGCTTGCA 1608
Query 1641 AGCTTCTAAGTCAGAAAATGCCAAGGCTCAATGTCGAAGTCATTGATGAACATCCTCCAG 1700
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1609 AGCTTCTAAGTCAGAAAATGCCAAGGCTCAATGTCGAAGTTATTGATGAACATCCTCCGG 1668
Query 1701 AGTCAAGACCTGAGAGCTCTCCAGTTGAGAGGATATACATATACAGAACAGTCGCAGGAC 1760
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1669 AGACAAGACCTGAGAGCTCTCCAGTTGAGAGGATATACATATATAGAACAGTCGCTGGAC 1728
Query 1761 CGAGAATGGATACGCCTGAATTTGTGTGGACGATACACAAGAATCCTGAGAAT-GGAGTT 1819
|||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 1729 CGAGAATGGACACGCCTGAATTTGTGTGGACGATTCACAAGAATCCTGAGA-TCGGAGTT 1787
Query 1820 TCACATCTAGCCATAAAGTAAACTTGCTGCTTCAGTCATATTTTCCTT-TCCATCTTCAG 1878
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 1788 TCACATCTAGCCATAAAGTAACCTTGCTGCTTCAGTCATATTTTCCTTATC-ATCTTGAG 1846
Query 1879 TTTTTGCAGACATTGTTGTGGGAGAGATTCACCTTCCATTTGTTCCCTTTCATATTGTTT 1938
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1847 TTTTTGCAGACATTGTTGTGGGAGA--TTCACCTTCCATTTGTTCCCTTTCATATTGTTT 1904
Query 1939 TTACTAAGATATTAGAATATCAGTGATAGAAGCATTTCATAGCTTGTACTCTGTTAAACA 1998
| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1905 TCACTAAGATGTTAGAATATCAGTTATAGAAGCATTTCATAGCTTGTACTCTGTTAAACA 1964
Query 1999 AA 2000
||
Sbjct 1965 AA 1966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77513648575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5