BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03210.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490240 jgi|Araly1|490240|fgenesh2_kg.6__3374__AT4G03210.1 1578 0.0
> Ahg490240 jgi|Araly1|490240|fgenesh2_kg.6__3374__AT4G03210.1
Length=1038
Score = 1578 bits (854), Expect = 0.0
Identities = 987/1049 (94%), Gaps = 17/1049 (2%)
Strand=Plus/Plus
Query 1 TTCATTGAGTCAAGTGCTCGAGACTGTAGAGTG-AAGTTTGATTTATTTAGAGAGATAAG 59
|||||||||||||||| | |||||||||||||| |||||||||||| ||||||||
Sbjct 1 TTCATTGAGTCAAGTGTTTGAGACTGTAGAGTGAAAGTTTGATTTA---AGAGAGAT--- 54
Query 60 TTaaaaaaaaaaTGGTCGGTATGGATTTGTTCAAATGTGTAATGATGATAATGGTGTTGG 119
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 55 TT---AAAAAAATGGTGGGTATGGATTTGTTCAAATGTGTGATGATGATAATGGTGTTGG 111
Query 120 TTGTCTCTTGTGGTGAAGCTGTTTCTGGAGCTAAGTTCGATGAGCTTTATCGGTCAAGCT 179
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 112 TTATCTCTTGTGGTGAAGCTGTTTCTGGAGCTAAGTTCGATGAGCTTTATCGCTCAAGCT 171
Query 180 GGGCTATGGATCATTGTGTCAACGAAGGCGAAGTCACAAAACTCAAGCTTGACAATTACT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GGGCTATGGATCATTGTGTCAACGAAGGCGAAGTCACAAAACTCAAGCTTGACAATTACT 231
Query 240 CTGGAGCTGGGTTTGAATCAAGAAGCAAATACTTGTTTGGTAAAGTCTCTATCCAGATTA 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CTGGAGCTGGGTTTGAATCGAGAAGCAAATACTTGTTTGGTAAAGTCTCTATCCAGATTA 291
Query 300 AGCTTGTTGAGGGTGATTCAGCAGGAACAGTCACTGCTTTCTACATGTCTTCAGATGGTC 359
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 292 AGCTTGTTGAGGGTGATTCAGCTGGAACAGTCACTGCTTTCTACATGTCTTCTGATGGTC 351
Query 360 CGAACCACAACGAATTCGATTTTGAGTTCTTAGGGAACACTACCGGCGAGCCTTACATAG 419
| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct 352 CTAACCACAACGAATTCGATTTCGAGTTCTTAGGGAACACAACCGGTGAGCCTTATATAG 411
Query 420 TCCAGACCAATATCTACGTGAACGGAGTTGGAAACAGAGAACAAAGACTCAACCTTTGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TCCAGACCAATATCTACGTGAACGGAGTTGGAAACAGAGAACAAAGACTCAACCTTTGGT 471
Query 480 TCGATCCCACCACTGAGTTTCACACTTACTCAATCCTCTGGAGTAAACGCAGTGTTGTAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TCGATCCCACCACTGAGTTTCACACTTACTCAATCCTCTGGAGTAAACGCAGTGTTGTAT 531
Query 540 TCATGGTAGACGAAACACCGATTCGAGTTCAGAAGAATCTTGAAGAGAAAGGTATCCCAT 599
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 532 TCATGGTAGACGAAACTCCGATTCGAGTCCAGAAGAATCTTGAAGATAAAGGTATCCCAT 591
Query 600 TTGCTAAAGATCAAGCAATGGGTGTTTACAGCTCCATTTGGAATGCAGATGATTGGGCTA 659
|||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||| |
Sbjct 592 TTGCTAAAGATCAAGCAATGGGAGTATACAGTTCGATTTGGAATGCTGATGATTGGGCAA 651
Query 660 CACAAGGAGGTCTTGTTAAAACTGATTGGAGTCACGCTCCTTTCGTTGCTTCTTACAAAG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 652 CACAAGGAGGTCTTGTTAAAACTGATTGGAGTCACGCTCCTTTCGTTGCTTCTTACAAGG 711
Query 720 AATTCCAAATCGATGCATGTGAGATTCCAACAACTACTGATCTAAGCAAGTGTAATGGAG 779
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 712 AATTCCAAATCGATGCTTGTGAGATTCCAACAACTTCTGATCTAAGCAAGTGTAATGGGG 771
Query 780 ACCAGAAGTTTTGGTGGGATGAACCAACTGTCTCTGAGCTTAGCCTTCATCAGAATCATC 839
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 ATCAAAAGTTTTGGTGGGATGAACCAACTGTCTCTGAGCTAAGCCTTCATCAGAATCATC 831
Query 840 AGCTTATTTGGGTTCGAGCTAATCATATGATTTATGATTATTGTTTTGATGCTACTAGGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGCTTATTTGGGTTCGAGCTAATCATATGATTTATGATTATTGTTTTGATGCTACTAGGT 891
Query 900 TTCCTGTTACTCCTCTTGAGTGCCAACATCATCGTCATTTGTAGTTTAGAGAT-TAGTCA 958
||||||||||||||||||||||||||||||||||||||||||||||| | || | |||
Sbjct 892 TTCCTGTTACTCCTCTTGAGTGCCAACATCATCGTCATTTGTAGTTTT-A-ATGTCGTCT 949
Query 959 AGAATAAA-AATGGATC-AAGAGAACACATGTGGTTACTCTTTGATGATTCTGTTTTAAT 1016
||| ||| | | |||| || ||||||||| ||||||||||||||||||||| |
Sbjct 950 TCTTTAAGGAATT-AGCCAAGATAAAACATGTGGTGGCTCTTTGATGATTCTGTTTTA-T 1007
Query 1017 GTATAAATAATCAATCTTCTATTGATTTT 1045
||||||||||||||| |||||||||||||
Sbjct 1008 GTATAAATAATCAATTTTCTATTGATTTT 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5