BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03210.1 Length=1073 Score E Sequences producing significant alignments: (Bits) Value Ahg490240 jgi|Araly1|490240|fgenesh2_kg.6__3374__AT4G03210.1 1578 0.0 > Ahg490240 jgi|Araly1|490240|fgenesh2_kg.6__3374__AT4G03210.1 Length=1038 Score = 1578 bits (854), Expect = 0.0 Identities = 987/1049 (94%), Gaps = 17/1049 (2%) Strand=Plus/Plus Query 1 TTCATTGAGTCAAGTGCTCGAGACTGTAGAGTG-AAGTTTGATTTATTTAGAGAGATAAG 59 |||||||||||||||| | |||||||||||||| |||||||||||| |||||||| Sbjct 1 TTCATTGAGTCAAGTGTTTGAGACTGTAGAGTGAAAGTTTGATTTA---AGAGAGAT--- 54 Query 60 TTaaaaaaaaaaTGGTCGGTATGGATTTGTTCAAATGTGTAATGATGATAATGGTGTTGG 119 || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 55 TT---AAAAAAATGGTGGGTATGGATTTGTTCAAATGTGTGATGATGATAATGGTGTTGG 111 Query 120 TTGTCTCTTGTGGTGAAGCTGTTTCTGGAGCTAAGTTCGATGAGCTTTATCGGTCAAGCT 179 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 112 TTATCTCTTGTGGTGAAGCTGTTTCTGGAGCTAAGTTCGATGAGCTTTATCGCTCAAGCT 171 Query 180 GGGCTATGGATCATTGTGTCAACGAAGGCGAAGTCACAAAACTCAAGCTTGACAATTACT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 GGGCTATGGATCATTGTGTCAACGAAGGCGAAGTCACAAAACTCAAGCTTGACAATTACT 231 Query 240 CTGGAGCTGGGTTTGAATCAAGAAGCAAATACTTGTTTGGTAAAGTCTCTATCCAGATTA 299 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 232 CTGGAGCTGGGTTTGAATCGAGAAGCAAATACTTGTTTGGTAAAGTCTCTATCCAGATTA 291 Query 300 AGCTTGTTGAGGGTGATTCAGCAGGAACAGTCACTGCTTTCTACATGTCTTCAGATGGTC 359 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 292 AGCTTGTTGAGGGTGATTCAGCTGGAACAGTCACTGCTTTCTACATGTCTTCTGATGGTC 351 Query 360 CGAACCACAACGAATTCGATTTTGAGTTCTTAGGGAACACTACCGGCGAGCCTTACATAG 419 | |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||| Sbjct 352 CTAACCACAACGAATTCGATTTCGAGTTCTTAGGGAACACAACCGGTGAGCCTTATATAG 411 Query 420 TCCAGACCAATATCTACGTGAACGGAGTTGGAAACAGAGAACAAAGACTCAACCTTTGGT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TCCAGACCAATATCTACGTGAACGGAGTTGGAAACAGAGAACAAAGACTCAACCTTTGGT 471 Query 480 TCGATCCCACCACTGAGTTTCACACTTACTCAATCCTCTGGAGTAAACGCAGTGTTGTAT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 TCGATCCCACCACTGAGTTTCACACTTACTCAATCCTCTGGAGTAAACGCAGTGTTGTAT 531 Query 540 TCATGGTAGACGAAACACCGATTCGAGTTCAGAAGAATCTTGAAGAGAAAGGTATCCCAT 599 |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 532 TCATGGTAGACGAAACTCCGATTCGAGTCCAGAAGAATCTTGAAGATAAAGGTATCCCAT 591 Query 600 TTGCTAAAGATCAAGCAATGGGTGTTTACAGCTCCATTTGGAATGCAGATGATTGGGCTA 659 |||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||| | Sbjct 592 TTGCTAAAGATCAAGCAATGGGAGTATACAGTTCGATTTGGAATGCTGATGATTGGGCAA 651 Query 660 CACAAGGAGGTCTTGTTAAAACTGATTGGAGTCACGCTCCTTTCGTTGCTTCTTACAAAG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 652 CACAAGGAGGTCTTGTTAAAACTGATTGGAGTCACGCTCCTTTCGTTGCTTCTTACAAGG 711 Query 720 AATTCCAAATCGATGCATGTGAGATTCCAACAACTACTGATCTAAGCAAGTGTAATGGAG 779 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | Sbjct 712 AATTCCAAATCGATGCTTGTGAGATTCCAACAACTTCTGATCTAAGCAAGTGTAATGGGG 771 Query 780 ACCAGAAGTTTTGGTGGGATGAACCAACTGTCTCTGAGCTTAGCCTTCATCAGAATCATC 839 | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 772 ATCAAAAGTTTTGGTGGGATGAACCAACTGTCTCTGAGCTAAGCCTTCATCAGAATCATC 831 Query 840 AGCTTATTTGGGTTCGAGCTAATCATATGATTTATGATTATTGTTTTGATGCTACTAGGT 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 AGCTTATTTGGGTTCGAGCTAATCATATGATTTATGATTATTGTTTTGATGCTACTAGGT 891 Query 900 TTCCTGTTACTCCTCTTGAGTGCCAACATCATCGTCATTTGTAGTTTAGAGAT-TAGTCA 958 ||||||||||||||||||||||||||||||||||||||||||||||| | || | ||| Sbjct 892 TTCCTGTTACTCCTCTTGAGTGCCAACATCATCGTCATTTGTAGTTTT-A-ATGTCGTCT 949 Query 959 AGAATAAA-AATGGATC-AAGAGAACACATGTGGTTACTCTTTGATGATTCTGTTTTAAT 1016 ||| ||| | | |||| || ||||||||| ||||||||||||||||||||| | Sbjct 950 TCTTTAAGGAATT-AGCCAAGATAAAACATGTGGTGGCTCTTTGATGATTCTGTTTTA-T 1007 Query 1017 GTATAAATAATCAATCTTCTATTGATTTT 1045 ||||||||||||||| ||||||||||||| Sbjct 1008 GTATAAATAATCAATTTTCTATTGATTTT 1036 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39952817016 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5