BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03220.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327489 jgi|Araly1|327489|fgenesh1_pm.C_scaffold_6002709 2241 0.0
> Ahg327489 jgi|Araly1|327489|fgenesh1_pm.C_scaffold_6002709
Length=1518
Score = 2241 bits (1213), Expect = 0.0
Identities = 1422/1520 (94%), Gaps = 25/1520 (2%)
Strand=Plus/Plus
Query 1 ATGGAGACAAGATCTGTGAAAC-G--gaagaagaagaagaaagaagaagaagCAAA---- 53
||||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAACAAGATCTGTGAAACGGAAGAAGAAGAAGAAGAAAGAAGAAGAAGCAAATTGG 60
Query 54 -TT-G-GT--------TTATCAGAGTAGATAGAATCAGCAACCTCCCTGATTCTCTAAAT 102
|| | || |||||| ||||||||||||||| ||||||||||||||||| | |
Sbjct 61 TTTAGTGTAGAGGAGATTATCAAAGTAGATAGAATCAGTAACCTCCCTGATTCTCTTATT 120
Query 103 CATCAGATTCTTCTCTTGCTTCCTCTTAAATCTGCAGCACAAGCTAGCTTACTTTCGAAA 162
||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||
Sbjct 121 CATCAGATTCTTCTCTTACTTCCTCTTAAATCTGCAGCTCAAACGAGCTTACTTTCGAAA 180
Query 163 CGATGGAGATCTCTCTTTCTCTCATTGCCTGATCTTGATTTCACCTCCATCAACGATCTC 222
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 AGATGGAGATCTCTTTTTCTCTCATTGCCTGATCTTGATTTCACCTCCATTAACGACCTC 240
Query 223 AAGAATCCGAAATCTTTCTCTTCTAACTCCATTTACAAAGTGCTTTCTCTTCGTAGTCAT 282
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 AAGAATCCGAAATCTATCTCTTCTAACTCCATTTACAAAGTGCTTTCTCTTCGTAATCAC 300
Query 283 CGTGACTCCAACAATCTTAGATCACTTCGTTTTCGCGTTCCCGTCACTTTCACAAGTCTC 342
||||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 301 CGTGACTTCAACAATCTTAGATCACTTCGTTTTCGCGCTCCCATCACTTTCACGAGTCTC 360
Query 343 AATTCCTTGATTCGTTTAGCTGTTACTCATCAGGTTCAAGATCTTGACATTGAAGTCACT 402
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 361 AATTCCTTGATTCGTTTAGCTGTTACTCATGAGGTTCAAGATCTTGACATTGAAGTTACT 420
Query 403 ACCAAAGACTACTTTAACTTCCCTCGTTGGATTGTGACCTCTCAAAATTTAAGAGCTCTG 462
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 421 ACAAAAGACTACTTTAACTTCCCTCGTTGGATTGTGACCTCTCAAGATTTAAGAGCTTTG 480
Query 463 ACGCTTAAATCAGC-CAACCTTGGTTTTCGATTACCTCCTTCATCATC-AGCACGAGGAG 520
| ||||| |||| | | ||| ||||||||||||||||||||||||||| | | | ||||
Sbjct 481 AAGCTTAGATCATCTC-ACCCTGGTTTTCGATTACCTCCTTCATCATCAATC-CTTGGAG 538
Query 521 GTTTCCAAAAGCTTACTTCACTCTCTTTATCTCGTGTGATACTACAC-A--ATCAACCTT 577
|||| ||||| |||||||||||||||||||||| |||||| |||||| | |||||||||
Sbjct 539 GTTTTCAAAAACTTACTTCACTCTCTTTATCTCTTGTGATCCTACACAATCATCAACCTT 598
Query 578 GTCTGTCAGATTTCTTCACTGATCCGAGCTTCCCTCTTCTGGAGAAACTAACCCTAGAAT 637
|||| |||||||||||||||||||| ||||| |||||||| |||||||||| |||||||
Sbjct 599 GTCTCTCAGATTTCTTCACTGATCCAAGCTTTCCTCTTCTAGAGAAACTAAACCTAGAAA 658
Query 638 GTTGCTTTGGACTCAAGGAACTTAAGGTTAGTTGCCGTCTTCTCCAAGAGTTTTCTCTAA 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTTGCTTTGGACTCAAGGAACTTAAGGTTAGTTGCCGTCTTCTCCAAGAGTTTTCTCTAA 718
Query 698 AGAACTCTTTACAGCTTGAGGGCTTAGAGGTTTCTGGTAATAAGCTTCAGAAACTTAAGG 757
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 AGAACTCTTTACAGCTTGAGGGCTTAGAGGTTTCTGGTAATAAACTTCAGAAACTTAAGG 778
Query 758 TTGAGAGTTGCTTCTATTCATACTCAGAAAAGAGCTTTGTGAAGATTAACACACCGAATC 817
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGAGAGTTGTTTCCATTCATACTCAGAAAAGAGCTTTGTGAAGATTAACACACCGAATC 838
Query 818 TCAAAACTTTCCTTTGGAATTCAAACGCTGTCACTACTAGTGTTCATTTCTTGGACAAGT 877
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 TCAGAACTTTCCTTTGGAATTCAAACGCAGTCACTACTAGTGTTCATTTCTTGGACAAGT 898
Query 878 TAGTTTGTCTGAGAAAAGCATTTGTTAAAGTGTTTTGGCATCATCAAGATCTCAATTCTC 937
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 899 TAGTTTGTCTGAGAAAAGCATTCGTTAAAGTGTTTTGGCTTCATCAAGATCTCAATTCTC 958
Query 938 AGATACAAAGCTTATTCACTCTCTTGTCAGGTCTCTGTCATTCCTATAAACTACAACTTG 997
||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 959 AGACACAAAGCTTATTCACTCTCTTGTCAGGTCTCTCTAATTCCTATAAACTACAACTTG 1018
Query 998 GAAACCAATCCGTAGAGATTTTGTCGAGTAAGAAGGGACTATTAAAGAATCATCTTCTAC 1057
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1019 GAAACCAATCCGTAGAGATTTTGTCAAGCAAGAAGGGACTATTAAAGAATCATCTTCTAC 1078
Query 1058 CGTTTCACAACATGAGATTCTTGGAACTGCAAACACGTTTGAATAGACACAATGTTCAAA 1117
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1079 CGTTTCACAACATGAGATTCTTGGAACTGCAAACACGTTTCAGCAGACACAATGTTCAAA 1138
Query 1118 CACTGTCATGTCTGTTCAAGAGCTGTCCAATGCTAAACATACTTACCGTCAAAATCATTG 1177
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 CACTGTCCTGTCTGTTCAAGAGCTGTCCAATGCTAAACATACTTACCCTCAAAATCATTA 1198
Query 1178 ATGATCAAACAAGTGAAAGAAGGCAATGGAATAAGGATTTGTGGGATATGTCAAACTCAG 1237
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1199 ATGATCAAACAAGTGAAAGAAGGCAATGGGATAAGGATTTGTGGAATATGTCAAACTCAG 1258
Query 1238 AGATTCAGTACTGGGAATCTCAAGCCTATGAATTAGAATCTTTCTTGAACCACTTGGAAT 1297
||||||| ||||||||||||||| |||||||||| ||| |||| ||||||||||||||||
Sbjct 1259 AGATTCAATACTGGGAATCTCAAACCTATGAATTGGAAGCTTTTTTGAACCACTTGGAAT 1318
Query 1298 TTGTGGAGATTCACGGATTCGTAGAGTGCGAGAACGAAATGAGCCTCGCAATCTTTTTGC 1357
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTGTGGAGATTCACGGATTCTTAGAGTGCGAGAACGAAATGAGCCTCGCAATCTTTTTGC 1378
Query 1358 TGAGACATGGAAAGGCTTTAATCAAGATGACGCTTCGGTCTAGTTTCCTCTGTAGAGACT 1417
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1379 TGAGACATGGAAAGGCTTTGATCAAGATGACTCTTCGGTCTAGTTTCCTCTGCAGAGACT 1438
Query 1418 CTCTCCGCAGACAAATGATAAGGTCACAGCTAACGGGATTCTCCATGGCTTCTTCCAAAG 1477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CTCTCCGGAGACAAATGATAAGGTCACAGCTAACGGGATTCTCCATGGCTTCTTCCAAAG 1498
Query 1478 CCAAAATCTCATTTCATTGA 1497
||||||||||||| ||||||
Sbjct 1499 CCAAAATCTCATTCCATTGA 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5