BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03230.1
Length=3258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490237 jgi|Araly1|490237|fgenesh2_kg.6__3371__AT4G03230.1 2091 0.0
> Ahg490237 jgi|Araly1|490237|fgenesh2_kg.6__3371__AT4G03230.1
Length=2559
Score = 2091 bits (1132), Expect = 0.0
Identities = 1238/1290 (96%), Gaps = 4/1290 (0%)
Strand=Plus/Plus
Query 226 ATG-ATTCTTTCTGTCTTCTTCTATATGTTTTTGCTGCATATTCGTCGATTAGATTGTTT 284
||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 1 ATGAATT-TTTCTGTCTTCTTCTATATGTTTTTGCTGCATATTTTTCGATTTGATTGCTT 59
Query 285 TGTTGCAGTTCAAGACTCCAAAACATTGTTCAAAGGTTCAACATTGATCAATGACAGCCA 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGTTGCAGTTCAAGACTCCAAAACATTGTTCAAAGGTTCAACATTGATCAATGACAGCCA 119
Query 345 TGGAGAGACTCTTGTTTCAGCTGGTCAGAGATTTGAGCTTGGCTTCTTCACTCCTAATGG 404
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 CGGAGACACTCTTGTTTCAGCTGGTCAGAGATTTGAGCTTGGCTTCTTCACTCCAAATGG 179
Query 405 AAGCTCCGACGAAAGAAGGTACTTAGGGATTTGGTTTTACAATTTACATCCACTGACTGT 464
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 AAGCTCCGATGAAAGGAGGTACTTAGGGATTTGGTTTTACAATTTACATCCACTTACTGT 239
Query 465 TGTCTGGGTTGCAAATCGTGAATCTCCGGTTCTTGACCGTTCCTGCATTTTCACCATCTC 524
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 TGTCTGGGTTGCAAATCGTGAATCTCCGGTTCTTGACCGTTCCGGCATTTTCACCATCTC 299
Query 525 TAAAGATGGGAATCTTGAAGTTATTGATTCAAAGGGAAGAGTGTATTGGGACACCGGTGT 584
|||||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 300 TAAAGAAGGCAATCTTGAAGTTATTGATTCTAAGGGAAAAGTGTATTGGGACACCGGTGT 359
Query 585 TAAACCTTCCTCAGTATCTGCGGAGAGAA-TGGTAAAGCTGATGGATAATGGTAATCTTG 643
| |||||||| ||| |||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 360 TGGACCTTCCTTAGTCTCTGCGCAGAGAACT-GTAAAGCTGATGGATAATGGTAATCTTG 418
Query 644 TGTTGATTAGTGATGGAAATGAAGCAAATGTGGTTTGGCAGAGTTTTCAGAATCCTACTG 703
||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGTTGATGAGAGATGGAGATGAAGCAAATGTGGTTTGGCAGAGTTTTCAGAATCCTACTG 478
Query 704 ATACATTTCTCCCAGGGATGAGGATGGATGAGAATATGACTTTATCATCATGGAGAAGCT 763
||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 479 ATACATTTCTCCCAGGGATGATGATGAATGAGAATATGACTTTATCATCATGGAGGAGCT 538
Query 764 TCAACGATCCATCACATGGAAATTTCACCTTTCAGATGGATCAAGAAGAAGACAAACAGT 823
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 TCAACGATCCATCACCTGGAAATTTCACATTTCAGATGGATCAAGAAGAAGACAAACAGT 598
Query 824 TCATCATTTGGAAAAGATCAATGAGATACTGGAAATCCGGAATTTCGGGTAAATTCATAG 883
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 TTATCATTTGGAAAAGATCAATGAGATACTGGAAATCCGGAATTTCGGGTAAATTCATCG 658
Query 884 GATCCGACGAGATGCCTTATGCGATTTCTTACTTTCTTTCCAATTTCACAGAGACTGTTA 943
||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||| |
Sbjct 659 GATCCGACGAGATGCCTTACGCAATTTCATACTTTCTTTCCAATTTTACAGAGACTGTAA 718
Query 944 CTGTTCACAATGCCTCTGTGCCTCCTCTCTTCACATCTTTGTATACCAATACAAGGTTCA 1003
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTGTCCACAATGCCTCTGTGCCTCCTCTCTTCACATCTTTGTATACCAATACAAGGTTCA 778
Query 1004 CCATGAGCTCCTCTGGTCAAGCTCAGTACTTCAGGTTAGATGGAGAAAGATTCTGGGCAC 1063
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CCATGAGCTCCTCTGGCCAAGCTCAGTACTTCAGGTTAGATGGAGAAAGATTCTGGGCAC 838
Query 1064 AGATTTGGGCTGAACCTAGAGATGAATGTAGTGTATACAATGCTTGTGGAAATTTTGGTA 1123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 AGATTTGGGCTGAACCTAGAGATGAATGTAGTGTCTACAATGCTTGTGGAAATTTTGGTA 898
Query 1124 GCTGCAACAGCAAGAATGAGGAAATGTGTAAGTGTTTGCCAGGTTTTAGGCCTAATTTCC 1183
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 GCTGTAACAGCAAGAATGAGGAGATGTGTAAGTGTTTGCCAGGTTTTAGGCCTAATTTCC 958
Query 1184 TGGAGAAATGGGTCAAGGGAGATTTTTCTGGTGGATGTTCCAGGGAGTCAAGGATCTGTG 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TGGAGAAATGGGTCAAGGGAGATTTTTCTGGTGGATGTTCCAGGGAGTCAAGGATATGTG 1018
Query 1244 GTAAAGACGGTGTTGTGGTGGGAGACATGTTCTTGAATCTGAGTGTGGTTGAAGTAGGAA 1303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1019 GTAAAGACGGTGTTGTGGTGGGAGACATGTTCTTGAATCTGACTGTGGTTGAAGTAGGAA 1078
Query 1304 GTCCGGATTCACAGTTTGATGCACATAATGAAAAAGAATGCAGAGCAGAGTGCTTGAATA 1363
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1079 GTCCGGATTCACAGTTTGATGCACATAATGAAAAAGACTGCAGAGCAGAGTGTTTGAATA 1138
Query 1364 ATTGCCAATGCCAAGCTTACTCATATGAAGAAGTTGATATACTTCAAAGCAATACCAAGT 1423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 ATTGCCAATGCCAAGCTTACTCATATGAAGAAGTTGATACACTTCAAAGCAATACCAAGT 1198
Query 1424 GCTGGATTTGGTTGGAGGATCTCAATAATCTCAAGGAAGGCTATTTAGGTAGCCGCAACG 1483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 GCTGGATTTGGTTGGAGGATCTCAATAATCTCAAGGAAGGCTATTTAGGTAGCCGCAATG 1258
Query 1484 TTTTCATTCGCGTAGCAGTTCCAGATATAG 1513
| |||||||||||||||||||| |||||||
Sbjct 1259 TATTCATTCGCGTAGCAGTTCCCGATATAG 1288
Score = 2025 bits (1096), Expect = 0.0
Identities = 1206/1261 (96%), Gaps = 0/1261 (0%)
Strand=Plus/Plus
Query 1998 AGAACGAGGTCGAGGAAGATACGGGGAAGCTAAAACCCCGGTGGTTTTGATCATTGTGGT 2057
|||||||| ||| ||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 1299 AGAACGAGCTCGTGGAAGATACAGAGAAGCTAAAACACCGGTGGTTTTGATCATTGTGGT 1358
Query 2058 GACGTTTACAAGTGCAGCTATTCTGGTCGTTCTGTCAAGCACTGCTTCCTATGTATTTTT 2117
||| |||||||||||||| |||||||| |||||||||||||||||||| ||||| | |||
Sbjct 1359 GACTTTTACAAGTGCAGCCATTCTGGTTGTTCTGTCAAGCACTGCTTCTTATGTGTATTT 1418
Query 2118 GCAAAGAAGAAAAGTAAACAAGGAACTAGGAAGTATACCAAGAGGAGTTCATTTATGTGA 2177
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1419 GCAAAGAAGAAAAGTAAACAAGGAACTAGGAAGCATACCAAGAGGAGTTAATTTATGTGA 1478
Query 2178 CAGTGAGAGACATATCAAAGAATTGATTGAATCGGGAAGGTTTAAACAAGATGATAGTCA 2237
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1479 CAGTGAGAGACATATTAAAGATTTGATTGAATCAGGAAGGTTTAAACAAGATGATAGTCA 1538
Query 2238 GGGCATAGATGTTCCATCTTTTGAGCTCGAGACCATCCTATATGCAACATCCAACTTCTC 2297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 AGGCATAGATGTTCCATCTTTTGAGCTCGAGACCATCCTATATGCAACATCCAACTTCTC 1598
Query 2298 AAATGCAAACAAGCTAGGCCAAGGAGGGTTTGGACCGGTTTATAAGGGAATGTTTCCTGG 2357
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1599 AAATGCAAACAAGCTAGGCCAAGGAGGGTTTGGACCGGTTTATAAGGGAATATTTCCTGG 1658
Query 2358 AGATCAAGAGATTGCTGTGAAGAGGCTATCTCGCTGCTCGGGTCAAGGACTGGAGGAATT 2417
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1659 AGATCAAGAGATTGCTGTGAAGAGGTTATCTCGCTGCTCGGGTCAAGGACTGGAGGAATT 1718
Query 2418 CAAGAATGAAGTTGTTTTGATTGCCAAGCTCCAACACCGGAATCTTGTTCGACTTCTTGG 2477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1719 CAAGAATGAAGTTGTTTTGATTGCCAAGCTCCAACACCGGAATCTTGTTCGACTCCTTGG 1778
Query 2478 CTATTGTGTTGCTGGAGAAGAGAAACTGTTATTGTATGAATACATGCCACACAAAAGCTT 2537
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1779 CTATTGTGTTGCTGGAGAGGAGAAACTGTTATTGTATGAATACATGCCTCACAAAAGCTT 1838
Query 2538 AGACTTCTTCATCTTCGACCGGAAGCTTTGCCAGCGATTAGATTGGAAGATGCGTTGTAA 2597
||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1839 AGACTTCTTCATCTTTGATCGGAAGCTTTGCCAGCGGTTAGATTGGAAGACGCGTTGTAA 1898
Query 2598 TATCATTCTAGGAATCGCTCGTGGACTTCTCTATCTGCATCAAGACTCTAGACTGAGAAT 2657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 TATCATTCTAGGAATCGCTCGTGGACTTCTCTATCTGCATCAAGACTCTAGACTGAGAAT 1958
Query 2658 CATCCACAGAGATCTAAAAACAAGCAACATTCTGTTAGATGAAGAGATGAATCCCAAGAT 2717
||| ||||| ||| |||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1959 CATTCACAGGGATTTAAAAACAAGCAACATTCTGTTAGATGAGGAAATGAATCCAAAGAT 2018
Query 2718 CTCTGACTTTGGCTTGGCTAGAATATTTGGAGGCAGTGAAACATCAGCCAATACTAATAG 2777
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2019 CTCTGACTTTGGCTTGGCTAGAATATTTGGAGGCAGTGAAACTTCAGCCAATACTAATCG 2078
Query 2778 AGTTGTTGGAACCTATGGATACATGTCTCCAGAGTATGCTTTAGAAGGTCTTTTCTCATT 2837
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2079 AGTTGTTGGAACCTATGGATACATGTCTCCAGAGTATGCTCTAGAAGGTCTTTTCTCATT 2138
Query 2838 CAAATCAGATGTCTTTAGTTTCGGCGTGGTTGTGATTGAAACTATCAGCGGGAAGCGTAA 2897
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 CAAATCAGATGTCTTCAGTTTCGGCGTGGTTGTGATTGAAACTATCAGCGGGAAGCGTAA 2198
Query 2898 CACCGGGTTTCATGAACCTGAGAAATCTTTAAGCCTTCTAGGCCATGCGTGGGATCTCTG 2957
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2199 CACCGGGTTTTATGAACCTGAGAAATCTTTAAGCCTTCTAGGCTATGCGTGGGATCTCTG 2258
Query 2958 GAAAGCGGAAAGGGGGATTGAGTTATTGGATCAGGCTTTACAAGAATCATGCGAAACCGA 3017
|||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 2259 GAAAGCGGAAAGAGGGATTGAGTTATTGGATCAGGCTTTAAAAGAATCGTGCAAAACCGA 2318
Query 3018 GGGATTCTTGAAGTGCTTGAACGTAGGACTTCTCTGTGTACAAGAAGATCCTAATGATCG 3077
| ||| ||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct 2319 AGAATTTTTGAAGTGCTTGAACGTAGGACTGCTTTGTATTCAAGAAGATCCTAATGATCG 2378
Query 3078 TCCTACAATGTCAAATGTTGTTTTCATGCTCGGAAGCAGCGAAGCTGCTACTCTTCCTAC 3137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2379 TCCTACAATGTCAAATGTTGTTTTCATGCTCGGAAGCAGCGAAGCTGCTACTCTTCCTAC 2438
Query 3138 TCCAAAACAACCGGCTTTTGTTCTTAGACGTTGCCCTTCATCAAGCAAAGCTTCCTCATC 3197
||||| |||||| |||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 2439 TCCAAGACAACCAGCTTTTGTCCTTAGACGTTGCGCTTCATCAAGCAAAGCTTCTTCATC 2498
Query 3198 CACCAAGCCAGAAACTTGCTCTGAAAATGAGCTTACCATAACTCTTGAAGATGGAAGATA 3257
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2499 CACCAAGCCAGAAACATGCTCTGAAAATGAGCTTACCATAACTCTTGAAGATGGAAGATA 2558
Query 3258 A 3258
|
Sbjct 2559 A 2559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122964018363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5