BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03240.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490236 jgi|Araly1|490236|fgenesh2_kg.6__3370__AT4G03240.1 1249 0.0
> Ahg490236 jgi|Araly1|490236|fgenesh2_kg.6__3370__AT4G03240.1
Length=812
Score = 1249 bits (676), Expect = 0.0
Identities = 771/817 (94%), Gaps = 5/817 (1%)
Strand=Plus/Plus
Query 1 GTGACAGAACCGCCATGGCTACAGCTTCAAGGTTTCTTCTACGGAAATTGCCGAGGTTTC 60
|||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 1 GTGACAGAGCCGCCATGGCTACAGCTTCAAGG--T-TTCTACGGACATTGCCGAGGTTTC 57
Query 61 TCAAGCTGTCTCCAACTCTTCTCCGTAGCAATGGCGTAAGAGTTTCAAGCAATCTGATTC 120
||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 58 TCAAGCTTTCTCCAACCCTTCTCCGTAGCAATGGCGTAAGATTTTCAAGCAATTTGATTC 117
Query 121 AAGATTCCATAGAACCGTTGGATTCCTTCTGGAGAATAGGATCTCGAATCCGCCATGATT 180
| | ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 118 AGGGTTCCATAGAACCGTTGGGTTCCTTCTGGCGAATAGGATCTCGAATCAGCCATGATT 177
Query 181 CTTTGACTACCAGAAGCTTCTCTTCTCAAGGTCCTGCTTCTGTCGATTACAGTTCGGTTT 240
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 178 CTTTTACTACCAGAAGCTTCTCTTCTCAAGGTCCTGCTTCTGTCGATTATAGTTCGGTTT 237
Query 241 TGCAGGAGGAAGAGTTTCACAAATTAGCCAACTTCACAATTAATCACCTTCTTGAGAAAA 300
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 238 TGCAGGAGGATGAGTTTCACAAATTAGCCAACTTCACAATAAATCACCTTCTTGAGAAAA 297
Query 301 TTGAGGATTATGGTGATAATGTTCAGATTGATGGTTTCGACATAGATTATGGGAATGAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGAGGATTATGGTGATAATGTTCAGATTGATGGTTTCGACATAGATTATGGGAATGAAG 357
Query 361 TTCTTACCCTTAAGCTTGGATCTTTAGGCACTTATGTACTGAATAAGCAAACTCCAAATC 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 358 TTCTTACCCTTAAGCTTGGATCTTTAGGCACATATGTACTGAATAAGCAAACTCCAAATC 417
Query 421 GACAAATCTGGATGTCTTCACCTGTGAGTGGCCCTTCTAGATTTGACTGGGACCGTGATG 480
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 418 GACAAATCTGGATGTCTTCACCCGTGAGTGGCCCTTCTAGATTCGACTGGGATCGTGATG 477
Query 481 CTAATGCGTGGATATATCGGCGAACTGAAGCAAAGTTGCATAAACTCCTGGAAGAGGAGT 540
||||||| ||||| || || |||| ||||||||||||||||||||||||||||||||||
Sbjct 478 CTAATGCATGGATTTACCGTAGAACCGAAGCAAAGTTGCATAAACTCCTGGAAGAGGAGT 537
Query 541 TAGAGAATCTATGTGGTGAACCAATCCAACTCTCATAAAGAAGGCTTTAAAACAATATTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TAGAGAATCTATGTGGTGAACCAATCCAACTCTCATAAAGAAGGCTTTAAAACAATATTT 597
Query 601 GTGAGCGAAAGGGTTTCATCTATGAACTTGAAACTGCTATACCCTGTTAAAGGTATATCT 660
| ||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 598 TT-AGCCAAAGGGTTTCATCTAGGAACTTGAAACTGCTATACCCTTTTAAAGGTATATCT 656
Query 661 ATGAAACATCCAGAGGAATAAACAAACAAGGCAGAAGACAAAGTTGTTTTAGTGTGAAAA 720
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 657 ATGAAACATCCAGAGGAATAAACAAACAAGGCACAAGACAAAGTTGTTTCAGTGTGAAAC 716
Query 721 CTGATTAGTGTTTCTGAATCTATTTTTAAACAGTAATGTCTCATAGTGACATTGTTGCAA 780
| ||||||||||| |||||||| ||| |||||||||| | |||||||||||||||| | |
Sbjct 717 CCGATTAGTGTTTGTGAATCTACTTT-AAACAGTAATTTTTCATAGTGACATTGTTACTA 775
Query 781 GTCTCTTTGTTTAATCAGAGCTGAAGCTGCCTTTTAC 817
|||||||||||||||||||||||||||| | ||||||
Sbjct 776 GTCTCTTTGTTTAATCAGAGCTGAAGCTTCTTTTTAC 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5