BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03250.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943390 jgi|Araly1|943390|scaffold_603934.1 2187 0.0
> Ahg943390 jgi|Araly1|943390|scaffold_603934.1
Length=1483
Score = 2187 bits (1184), Expect = 0.0
Identities = 1369/1455 (94%), Gaps = 25/1455 (2%)
Strand=Plus/Plus
Query 222 TTAAGACTCCTATGCAAGTTATGGCGCTTGAGAATTTCTACAATGAGCATAAGTATCCGA 281
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TTAAGACTCCTATACAAGTTATGGCGCTTGAGAATTTCTACAATGAGCACAAGTATCCGA 60
Query 282 CTGAAGAAATGAAGGGCAAGTTAGCAGAGGAAGTTGGATTAACTGAGAAGCAAGTTTCAG 341
| ||||| |||||||| ||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 61 CCGAAGATATGAAGGGTAAGTTAGCAGAGGAAATAGGATTAACCGAGAAGCAAGTTTCAG 120
Query 342 GTTGGTTCTGCCATAGAAGGTTAAAAGACAAACGTCATGTAAAAGAAGATGGGAATGCCA 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 GTTGGTTCTGCCATAGAAGGTTAAAAGACAAACGTCATGTAAAAGAAGATGGGAACGCCA 180
Query 402 TTGGGAGCCAAGATCGGTCAAGCGTTGTTCTTCAGGATCGTGGAAGTGGGCTTCGACAGG 461
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 181 TCGGGAGCCAAGATCGGTCAAGTGTTGTTCTTCAGGATCGTGGAAGCGGGCTTCGACAGG 240
Query 462 ATTCATGTGGTAGTACAAAGCAAACGGATTATTGGAACCCCAAGCCTAGGGAAGTTGAAA 521
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTCATGTGGTAGCACAAAGCAAACGGATTATTGGAACCCCAAGCCTAGGGAAGTTGAAA 300
Query 522 GTC-AA------A----GGCT-TTATATGGGAAATGCTGATGGTGAAGATAGTACATCTT 569
||| || | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCAAAGGCTTTATGGGGGCTCTTATATGGGAAATGCTGATGGTGAAGATAGTACATCTT 360
Query 570 CTGATCGTAGCTCATCATTACGTAAGAATCTTGTCTCTAGCAAAGATGGAATTCGCGATG 629
|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 361 CTGACCGTAGCTCATCATTACATAAGAATCTTGTCTCTAGCAAAGATGGAATCCGCGATG 420
Query 630 TGGAAAGTTCTAGATATGTTGCACATAAAGACGTTATTCAGCATCCTCAGTTCATGAGAA 689
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 421 TGGAAAGTTCTAGATATGTTGCACATAAAGACGTTATCCAGCATCCTCAGGTCATGAGAA 480
Query 690 GCTATGGGTATAATAAGCCTTCGGGATACTTGAAAGTGAAGGGAGAGAGTGAGAATTTTG 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTATGGGTATAATAAGCCTTCGGGATACTTGAAAGTGAAGGGAGAGAGTGAGAATTTTG 540
Query 750 CTATCACTGCCGTAAAGAGACAATTAGGAAGACAATACCAAGAGGATGGTCCACCTCTGG 809
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 CTATCACTGCCGTAAAGAGACAATTAGGAAGACAATACCAAGAGGATGGTCCACCTCTAG 600
Query 810 GGGTTGAATTTGATCCTCTTCCTCCCGGTGCATTTGAGCCTCAGACTAATCCTATAGTTC 869
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 601 GGGTTGAATTTGATCCTCTTCCTCCTGGTGCATTTGAGCCTCAGACTAATGCTATAGTTC 660
Query 870 ACGAGCCAATATATGTTGGGAATCAGAGACGGCCTCACCTTCCACATTTACTTGGAACGA 929
| |||||||| ||| |||||||||| |||||| |||||| |||||||||||||||||| |
Sbjct 661 AAGAGCCAATCTATATTGGGAATCAAAGACGGTCTCACCCTCCACATTTACTTGGAACTA 720
Query 930 GGAAGAGCTTTAATCCTGGTCCTAGCTATGAATTAGCTCGTAAATCAAAGTTGCATTCGC 989
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 GGAAGAGCTTTAATCCTGGTCCTAGCTATGAATTAGCTCGTAAATCAAAGATGCATTCGC 780
Query 990 CAGATCCAGATTCAGAGGATGATGA-GCATGATGATGATGACAACATAATGGTTGGAATG 1048
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 781 CAGATCCAGATTCAGAGGATGATGATG-ATGATGATGATGACAACATAATGGTTGGAATG 839
Query 1049 GAGCCTGGTCTAAGAGATAAGAAA-AGTTTTGGGGAACCAAGACTGAAATCCCCTTCTAC 1107
|||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |
Sbjct 840 GAGCCTGGTCTAAGAGATAA-AAAGAGTCTTGGGGAACCAAGACTGAAATCCCCTTCTCC 898
Query 1108 CAGTTTCTATAATTCTGTACCTCGCCACAAATCGTTTAAAGAGACATTCAAAGGTTCACC 1167
|||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 899 CAGTTTCTATAATTCTGTCCCTCACCACAAATCGTTTAAAGAGACATTAAAAGGTTCACC 958
Query 1168 ACGGGAAATCCCTGTAACTAACAGCAAGAAGGGTTGGATAAGTTCCAAAAGTTGGGCTGA 1227
| | |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 959 AAGAGAAATCCCTGTAACTAACAGCAAGAATGGTCGGATAAGCTCCAAAAGTTGGGCTGA 1018
Query 1228 AGGGTCGAGAAACCATCTGGTTGCCAACGTCCAAAATCTTTCTGGAAGCAATATTGAAAC 1287
||| ||||||||| || || |||||||| |||| ||||||||||| ||||| ||||||||
Sbjct 1019 AGGTTCGAGAAACAATATGATTGCCAACTTCCATAATCTTTCTGGGAGCAACATTGAAAC 1078
Query 1288 CAATCAGTCTCATGATTATGATAATA-ATATATCTAA-TGGCGGACGCAAGACGGGATAT 1345
|||||||||||||||||||||||| | |||||| ||| ||||||||||||||| ||||||
Sbjct 1079 CAATCAGTCTCATGATTATGATAA-ACATATAT-TAAATGGCGGACGCAAGACCGGATAT 1136
Query 1346 CTCACTAAATCTTCGAAGCTGTTACCTCCGAGTAGAAGCAGATCCCCTGAGTCAATGGAT 1405
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1137 CTCACTAAATCTTCGAAGCTGTTGCCTCCGAGTAGAAGCCGATCCCCTGACTCAATGGAT 1196
Query 1406 AGAGGTCCATCTTCTGGGATGGCAGGAATA-TATCACGGGGAGAGGAATCAAATGAAAAT 1464
||||||||||||||||||||||| |||| | |||||||| |||||||||||||||||||
Sbjct 1197 AGAGGTCCATCTTCTGGGATGGCGGGAA-AGTATCACGGAGAGAGGAATCAAATGAAAAC 1255
Query 1465 GCAGAGAGAGAAATTGCATTCGACTGATGAACCACCGGTTGCCAAACGAGTGAAACATGG 1524
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GCATAGAGAGAAATTGCATTCGACTGATGAACCACCGGTTGCCAAACGAGTGAAACATGG 1315
Query 1525 GTATATTCAGCAAGTATATGCACCAAAATCATCATCATACAGCGAGATTCTTGAACGAAA 1584
||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1316 GTATATTCAGCAAGTTTATGCACCAAAATCATCAT-A--CAGCGAGATTCTTGAACGAAA 1372
Query 1585 AAGCCAGATAAATCGGTCTGGTGTGGAACTGCCTTCTAGTTTAAGCGGGGACGATGAGAC 1644
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1373 AAGCCAGATAAATCGGTCTGGTGTGGAATTGCCCACTAGTTTAAGCGGGGACGATGAGAC 1432
Query 1645 TGACGAATCTAGCTC 1659
|||||| |||||||
Sbjct 1433 AGACGAAACTAGCTC 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5