BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03260.1
Length=2843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490234 jgi|Araly1|490234|fgenesh2_kg.6__3368__AT4G03260.1 4063 0.0
> Ahg490234 jgi|Araly1|490234|fgenesh2_kg.6__3368__AT4G03260.1
Length=2750
Score = 4063 bits (2200), Expect = 0.0
Identities = 2553/2715 (94%), Gaps = 58/2715 (2%)
Strand=Plus/Plus
Query 131 TTTTCAAAT-CCAATCCTTTTCCTCCCTGGTGACCAAGTAATTGGGGATTAACAAAGGGA 189
||||||||| |||||| ||||||| || |||||||||||||||||||| ||| ||| |||
Sbjct 73 TTTTCAAATCCCAATCATTTTCCT-CCAGGTGACCAAGTAATTGGGGAATAA-AAAAGGA 130
Query 190 CTGGGGCTTTATTAAGCTCGAAACAATTGTTCTTCACTCTGGCCGCTTCTGCAAAGTCGT 249
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 C-AGGGCTTTATTAAGCTCGAAACAATTGTTCTTCACTCTGGCCGCTTCTGCAAAGTCGT 189
Query 250 GTGCTTCTCGCACCTCTGCGCAGGTGTGGGGTGGCCTTGAAGTGGTGACTTCACTCTGTC 309
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 190 GTGCTTCTCGCACCTCGGCGCAGGTGTGGGGTGGCCTTGAAGTGCTGACTTCACTCTCTC 249
Query 310 TTCCAAGGATTTCTCTAGCTTCTATCATTTGGAGGCTCCGTCGTGTTTCTGAGGGTCTTA 369
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 250 TTCCAAGGATTTCTCTAGCTTCCATCATTTGGAGGCTCCGTCGTGTTTCTGAGGGTCTTA 309
Query 370 CCCTTGATTACGGCTAACATTTACTACGCCCACTATACCACCTC-T-TAA-GCTTTTATA 426
|||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||
Sbjct 310 CCCTTGATTACGGCTAACATTTACTACGCCCACTATACCACCACCTCTAAAGCTTTTATA 369
Query 427 AGAACTTTTTATTCGTGCAAAAACTTAACTTGGATCTTAATTGTTTCTAGTTTAGTTGTG 486
| |||| | |||||||||| |||| || ||||||||||| ||||||||||||| |||||
Sbjct 370 ACAACTCTCTATTCGTGCACAAACGTAGCTTGGATCTTAGTTGTTTCTAGTTTTTTTGTG 429
Query 487 GTTGTAAAGTAAAGAACCGtttttttgtggtttggttttgcttttttagtttCCGTTGGT 546
||| | | | |||| | || ||| |||| ||||| | || |
Sbjct 430 GTT-T---G----G-----TTTTGCT-TG-TTTAGTTTC-CTTTT---G-----GT-G-- 462
Query 547 GATGTAGTTCGATGTTATTAAGTTTGACACAATGGTCAGGTTTTCATGCTTCAACGCTCA 606
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 -ATGTAGTTCCCTGTTTTTAAGTTTGACACAATGGTCAGGTTTTCATGCTTCAACGCTCA 521
Query 607 CATCCACCGCCATAGACCTAAGAAATCTGTTGAAGGATTTTCAGAACGAGTGATCAAAGA 666
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 522 CATCCACCGCCATAAACCTAAGAAATCTGTTGAAGGACTTTCAGAACGAGTGATCAAAGA 581
Query 667 AGATGGGTCTAAATCAAAAGGATTGAGCTCAATTATATTTGGGAGAAACATTGCTTCTGT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AGATGGGTCTAAATCAAAAGGATTGAGCTCAATTATATTTGGGAGAAACATTGCTTCTGT 641
Query 727 TAGTGAAAACAGCAAGCCA---G-C-C-GCTG-T-T-GAGCGTGTCTGGAAATCTGAGGA 777
|||||||||||||| |||| | | | || | | | ||||| |||||||||||||||||
Sbjct 642 TAGTGAAAACAGCAGGCCAACTGGCTCTGCCGCTATTGAGCGGGTCTGGAAATCTGAGGA 701
Query 778 AATTAAGCCCAGTGGCATTCTTGAGCATGGTATTGGGACGCACCAGGTACTGCATCTCAA 837
||||||||||||||| ||||||||||||| ||||| ||||| ||||||| |||||||||
Sbjct 702 AATTAAGCCCAGTGGTATTCTTGAGCATGATATTGACACGCATCAGGTACGGCATCTCAA 761
Query 838 GAAAAGTCAATCTCATGGAAATGAACTATACTTGGATGGGCGGGATGCCACAGAGAATGG 897
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GAAAAGTCAGTCTCATGGAAATGAACTATACTTGGATGGGCGGGATGCCACAGAGAATGG 821
Query 898 AACAGACGATGCATCAGATCGGATTACTTCTCCGAATTCTCTTGAACAACAGAGTGGTAT 957
||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 822 AACAGACGATGGATCAGATCCGATTACTTCTCCAAATTCTCTTGAACAACAGAGTGGTAC 881
Query 958 TCACGAGGCAGGCAGCAGCAAGCGTGTAGATGAAAGTCCTAATCTGTATCAGCAAGGTCC 1017
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 882 TCACGAGGCAGGCAGCAGCAAGCATGTAGATGGAAGTCCTAATCTGTATCAGCAAGCTCC 941
Query 1018 TCGAGCTTCTGTTTCTGCTTACCAGGGTTCAAATCAAGCACTCTGTGGGTCTATTTTCTC 1077
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 942 TCGAGCTACAGTTTCTGCTTACCAGGGTTCAAATCAGGCACTCTGTGGGTCTATTTTCTC 1001
Query 1078 GGTTGGAGATCTTCATCATACTGATAAAGACAGCCGTCAACTCGATGATACCTCCTTATA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GGTTGGAGATCTTCATCATACTGATAAAGACAGCCGTCAACTCGATGATACCTCCTTATA 1061
Query 1138 TGGTGAACAGATGGACAACTCAAACAGTCAAACACCTCATGATTCACCTTTGATGGTGAG 1197
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1062 TGGTGAACAGATGGACAACTCAAACAGCCAAACACCTCATGATTCACCTTTGATGGTGAG 1121
Query 1198 GTCGAATTCATTGCCTAATATTGCTGACTCTTCATCAGAGAAGTCTTCACCTTTCAAATA 1257
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GTCGAATTCAATGCCTAATATTGCTGACTCTTCATCAGAGAAGTCTTCACCTTTCAAATA 1181
Query 1258 TTCTTCTCACCACTCTAGATCCTCTGATGACCTTCATGCCCTCGACACT-CGCCAAACAG 1316
||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||
Sbjct 1182 TTCTTCTCACCACTCTAGATCCTCTGATGACCTTCGTGCTCTCTACA-TGCGCCAAACAG 1240
Query 1317 ATAAATCTGTCCATGAGACTGATGAAGAGGTGAAGCAAGAGGAAGATCAAGATCGGGACT 1376
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1241 ATAAATCTGTCCATGAGACTGATGAAGAGGTGAAGCAAGAGCAAGATCAAGATCGGGACT 1300
Query 1377 ATGATATGCATAATTCTGGAGATAACAACAAGGAAAATCTCGTGGAGGATGGATATGATG 1436
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1301 ATGATACGCATAATTCTGGAGATAACAACCAGGAAAATCTCGTGGAGGATGGATATGATG 1360
Query 1437 ATTCATATGATTATTCTTCTTTGGCAAAAGATTGGATCGTACCACCAACAGATGAGCTTA 1496
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1361 ATGCATATGATTATTCTTCTTTGGCAAAAGATTGGATCGTACCACCAACAGATGAGTTTA 1420
Query 1497 AATTATCAAAGTTCCTTGAAGGAGAAACAACAAACCAGCAAGCAGAATTTTCGGGAAAGG 1556
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1421 AATTAACAAAGTTCCTTGAAGGAGAAACATCAAACCAGCAAGCAGAATTTCCGGGAAAGG 1480
Query 1557 ATTCTAAATTCAAGCGTATCGAAGATTGGGTCAATGACCTTCAGCATGTAAACTTGTCTG 1616
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1481 ATTCTAAATTCAAGCGTATCGAGGATTGGGTCAATGACCTTCAGCATGTAAACTTGTCTG 1540
Query 1617 AGGAAGCTGATGAAATAACAGGGTACGATGATGAGTTGCCAAGAGAACCCGTCGTGTTGA 1676
|||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 1541 AGGAAGCTGATGAAATAACAGGGTACGACGATGAGTTGCCAAGAGAACCTGTCATGTTGA 1600
Query 1677 ATGAGCAAGCAACATCTTCTGCTAAAGTAGATGCCATCAAGTTAACTCCTGGAATGGAAG 1736
|||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1601 ATGAGCCAGTAACAGCTTCTGCTAAAGTGGATGCCATCAAGTTAACTCCTGGAATGGAAG 1660
Query 1737 CTGCGAAAAAGTATATATCCTCTCTAAGTGCTTCTGCAACCACAGCCCAGCTGGTTAGTC 1796
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1661 CTGCGAAAAAGTATATATCCTCTCTAAGTGCTTCTGCAACCACAGCCCAACTGGTTAGTC 1720
Query 1797 ATGGTCTGGTTGTGATACCATTCCTCAGTGCATTTGTTGGTCTGAGAGTTCTCAATCTCT 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 ATGGTCTGGTTGTGATACCATTCCTCAGTGCATTTGTTGGTCTGAGAGTTCTCAATCTCT 1780
Query 1857 CAGGAAATGCTATAGTTAGAATAACCGCTGGTGCTCTTCCTCGAGGTTTACATGCATTGA 1916
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1781 CAGGAAATGCTATAGTTAGAATAACCGCTGGTGCTCTTCCTCGAGGACTACATGCATTGA 1840
Query 1917 ATTTGTCGAAGAACAGTATCTCGGTGATTGAGGGCCTACGTGAACTCACTCGGCTTCGAG 1976
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 ATTTGTCGAAGAACAGCATCTCGGTGATTGAGGGCCTACGTGAACTCACTCGGCTTCGAG 1900
Query 1977 TATTAGATTTGAGTTACAACCGAATACTGAGACTTGGTCATGGTCTGGCTTCGTGCTCCT 2036
| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 1901 TTTTAGATTTGAGTTACAACCGAATACTTAGACTTGGTCATGGTCTGGCATCTTGCTCCT 1960
Query 2037 CTCTGAAAGAACTATACCTAGCTGGGAACAAAATCAGCGAAATCGAGGGTCTTCATCGAC 2096
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1961 CTCTGAAAGAACTATACCTAGCTGGGAACAAAATCAGCGAAATCGAGGGTCTTCATCGTC 2020
Query 2097 TTTTGAAATTGACGGTCCTGGATTTACGCTTCAATAAGTTTTCAACCACCAAATGTCTTG 2156
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2021 TCTTGAAATTGACGGTCTTGGATTTACGCTTCAATAAGTTTTCAACCACCAAATGTCTTG 2080
Query 2157 GCCAGCTCGCTGCAAATTACAGTTCTCTTCAGGCTATAAGCTTGGAAGGTAACCCTGCAC 2216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2081 GCCAGCTCGCTGCAAATTACAGTTCTCTTCAGGCTATAAGCTTGGAAGGTAACCCTGCAC 2140
Query 2217 AGAAGAATGTTGGTGATGAACAACTGAGAAAGTACCTTTTGGGACTTCTGCCAAATTTGG 2276
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2141 AGAAGAATGTTGGTGATGAACAACTGAGAAAGTACCTTTTGGGACTTCTTCCAAATTTGG 2200
Query 2277 TATACTATAATAGACAAGGCACTAAAGATGCTCGGCTCGG-GACAAGCACACATCAGTTG 2335
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2201 TATACTATAATAGACAAGGCACTAAAGATGCTCGGCTCGGAG-CAAGCACACATCAGTTG 2259
Query 2336 GACCGAGGCCTTAGATCAGAGCTCAAAAACAGTAGCCGGAAGAGTAGCCATGGTGCATCC 2395
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2260 GACCGAGGCCTTAGATCAGAGCTCAAAAACAGTTGCTGGAAGAGTAGCCATGGTGCATCC 2319
Query 2396 AGTTCTCACAAACCTGGATCCTCCACAGCTCGTAAAGCACCAGCATTGCAGAAACGGTCC 2455
|||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2320 AGTTCTCACAAACCCGGATCCTCCGCAGCTCGTAAAGCACCAGCTTTGCAGAAACGGTCT 2379
Query 2456 AAGGAGAGACGCAGCCGTCTTCCACCTGTGGGACACAAACTATCTCCAGCTGCTTACGAG 2515
||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 2380 AAGGAGAGAAGCAGCCGTCTTCCACCTGTGGGACACAAAATATCTACAGCTGCTGACGAG 2439
Query 2516 AATTATCACGTTGCTACTGGTGATAGATTGTCTAGTCTGAGAACTGAGCTCTCCATGCGA 2575
||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct 2440 AATTATCACGTTGCTACTGCTGATAGATTGTCTAGTCTGAGATCTGAGCTCTCTATGCGT 2499
Query 2576 AGAAGTCGAAGTGAAGGAACTCTCGGACCTATCTGAtctctctctctcCCTCTTTCATTG 2635
| |||||||||||||||||||||||||||||||||||||||||||| || | || |||||
Sbjct 2500 ATAAGTCGAAGTGAAGGAACTCTCGGACCTATCTGATCTCTCTCTC-CC-T-TT-CATTG 2555
Query 2636 CCTGCGATTTCCTTAGCGAGGTAACGATGAAGATGTGATAGATACACA--CTTTCTTCCC 2693
||| ||||||||| ||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 2556 GCTGTGATTTCCTTTGCGAGGTAACGATGAAGATGTGATAGATATATATACTTTCTTCCC 2615
Query 2694 TTTATTCATCTTCTTCATCTTTGTGTTTT-GTTGTTGTGCATTAC-AT--ACATCAGAAG 2749
||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 2616 TTTATTCATCTTCTTCATCTTTGTGTTTTTGTTGTTGTGCATTACCATTTACATCAGAAG 2675
Query 2750 CTTTGATTCTTATAGCTTCTCAATAATGTCTGAAATTGGAAACCATGGTATACATTCTTT 2809
||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2676 CTTTGATTCTTTTAGCTTCTCAATAATGTCTGAAATTTGAAACCATGATATACATTCTTT 2735
Query 2810 TCAGCACAGTCTGAG 2824
|||||||||||||||
Sbjct 2736 TCAGCACAGTCTGAG 2750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107300220165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5