BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03270.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490232 jgi|Araly1|490232|fgenesh2_kg.6__3366__AT4G03270.1 1373 0.0
> Ahg490232 jgi|Araly1|490232|fgenesh2_kg.6__3366__AT4G03270.1
Length=903
Score = 1373 bits (743), Expect = 0.0
Identities = 853/905 (94%), Gaps = 12/905 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTCCACAATAACTTCAACGAC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTACACAATAACTTCAACGAC 60
Query 61 GACACAGAC--T-ATGAAACTTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATG 117
||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACACAGACGATGATGAAACCTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATG 120
Query 118 CCTTCTTCTCATTACTTCCATAGCCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAAC 177
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTCTTCTCATTACTTCCATAGTCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAAC 180
Query 178 CAAGCCATTTCTTCAATCACTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTAT 237
|| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACGCCATTAGTTCAATCATTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTAT 240
Query 238 CTTGCTGTGAATTATCTAGACAGGTTCTTGTCTAGCGAAGATATGCCGCAGTCAAAGCCC 297
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 241 CTTGCTGTGAATTATCTAGACAGATTCTTGTCCAGCGAAGATATGCCGCAATCAAAGCCC 300
Query 298 TGGATTCTTAAGCTCATATCTCTCTCTTGTGTCTCTTTGTCTGCAAAAATGAGGAAACCA 357
|||||||| ||||| || ||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 301 TGGATTCTCAAGCTTATCTCTCTTTCTTGTGTCTCTTTGTCTGCCAAAATGAGGAAGCCA 360
Query 358 GACATGTCTGTTTCTGATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAG 417
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGATGTCTGTTTCTCATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAG 420
Query 418 AGAATGGAGAATGTGATTCTAGGAGCTCTTAAATGGAGGATGCGCTCTGTTACTCCTTTC 477
|||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||
Sbjct 421 AGAATGGAGAATGTGATTTTAGGAGCTCTTAAATGGCGAATGCGCTCTGTTACACCTTTC 480
Query 478 TCCTTTTTGGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGAAGATCCTTTACTACTA 537
|||||| | ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 481 TCCTTTCTCGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGA---TCCTTTGGTACTA 537
Query 538 AAACATTCCCTCAAATCTCAAACCAGTGATCTTACTTTCAGTCTTCAACATGATATCAGT 597
||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||
Sbjct 538 AAACATTCCCTCAAATCTCAAGCCATTGATCTTACCTTCAATCTTCAACATGATATCAGA 597
Query 598 TTCCTCGAGTTTAAACCATCGGTGATTGCAGGCGCGGCACTTCTCTTTGCTTCTTTCGAG 657
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 TTCCTTGAGTTTAAACCATCGGTGATTGCAGGCGCCGCACTTCTCTTTGCTTCTTTCGAG 657
Query 658 CTCTGTCCTCTACAGTTTCCATGTTTCAGTAACAGAATCAACCAATGCACATATGTAAAT 717
||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 658 CTCTGTCCTCTACAGTTCCCATGTTTCAGTAACAGAATCTACCAATGCACATTTGTAAAT 717
Query 718 AAGGATGAGTTAATGGAGTGTTACAAAGCAATACAAGAGAGAGATATTATAGTTGGAGAA 777
||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 718 AAGGATGAGTTAATGAAGTGTTACAAAGCAATACAAGAGAGAGATAT-A--GTTGGAGAA 774
Query 778 AACGAAGGAAGCACTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGTTGTGAA 837
||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 775 AACGAAGCAAGCTCTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGCTGTGAA 834
Query 838 AGCGATAAGAGCATCACAATCACAGCTTCTTCTTCACCTAAGAGGAGGAAAACTAGTACT 897
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 835 AGCGATAAGAGCATCACAATCACAGCTTCTTC---ACCTAAGAGGAGGAAAACTAGTACT 891
Query 898 CGTCG 902
|||||
Sbjct 892 CGTCG 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5