BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03270.1 Length=909 Score E Sequences producing significant alignments: (Bits) Value Ahg490232 jgi|Araly1|490232|fgenesh2_kg.6__3366__AT4G03270.1 1373 0.0 > Ahg490232 jgi|Araly1|490232|fgenesh2_kg.6__3366__AT4G03270.1 Length=903 Score = 1373 bits (743), Expect = 0.0 Identities = 853/905 (94%), Gaps = 12/905 (1%) Strand=Plus/Plus Query 1 ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTCCACAATAACTTCAACGAC 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTACACAATAACTTCAACGAC 60 Query 61 GACACAGAC--T-ATGAAACTTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATG 117 ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 GACACAGACGATGATGAAACCTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATG 120 Query 118 CCTTCTTCTCATTACTTCCATAGCCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAAC 177 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 CCTTCTTCTCATTACTTCCATAGTCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAAC 180 Query 178 CAAGCCATTTCTTCAATCACTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTAT 237 || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 181 CACGCCATTAGTTCAATCATTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTAT 240 Query 238 CTTGCTGTGAATTATCTAGACAGGTTCTTGTCTAGCGAAGATATGCCGCAGTCAAAGCCC 297 ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 241 CTTGCTGTGAATTATCTAGACAGATTCTTGTCCAGCGAAGATATGCCGCAATCAAAGCCC 300 Query 298 TGGATTCTTAAGCTCATATCTCTCTCTTGTGTCTCTTTGTCTGCAAAAATGAGGAAACCA 357 |||||||| ||||| || ||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 301 TGGATTCTCAAGCTTATCTCTCTTTCTTGTGTCTCTTTGTCTGCCAAAATGAGGAAGCCA 360 Query 358 GACATGTCTGTTTCTGATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAG 417 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAGATGTCTGTTTCTCATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAG 420 Query 418 AGAATGGAGAATGTGATTCTAGGAGCTCTTAAATGGAGGATGCGCTCTGTTACTCCTTTC 477 |||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||| Sbjct 421 AGAATGGAGAATGTGATTTTAGGAGCTCTTAAATGGCGAATGCGCTCTGTTACACCTTTC 480 Query 478 TCCTTTTTGGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGAAGATCCTTTACTACTA 537 |||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 481 TCCTTTCTCGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGA---TCCTTTGGTACTA 537 Query 538 AAACATTCCCTCAAATCTCAAACCAGTGATCTTACTTTCAGTCTTCAACATGATATCAGT 597 ||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||| Sbjct 538 AAACATTCCCTCAAATCTCAAGCCATTGATCTTACCTTCAATCTTCAACATGATATCAGA 597 Query 598 TTCCTCGAGTTTAAACCATCGGTGATTGCAGGCGCGGCACTTCTCTTTGCTTCTTTCGAG 657 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 598 TTCCTTGAGTTTAAACCATCGGTGATTGCAGGCGCCGCACTTCTCTTTGCTTCTTTCGAG 657 Query 658 CTCTGTCCTCTACAGTTTCCATGTTTCAGTAACAGAATCAACCAATGCACATATGTAAAT 717 ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 658 CTCTGTCCTCTACAGTTCCCATGTTTCAGTAACAGAATCTACCAATGCACATTTGTAAAT 717 Query 718 AAGGATGAGTTAATGGAGTGTTACAAAGCAATACAAGAGAGAGATATTATAGTTGGAGAA 777 ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| Sbjct 718 AAGGATGAGTTAATGAAGTGTTACAAAGCAATACAAGAGAGAGATAT-A--GTTGGAGAA 774 Query 778 AACGAAGGAAGCACTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGTTGTGAA 837 ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 775 AACGAAGCAAGCTCTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGCTGTGAA 834 Query 838 AGCGATAAGAGCATCACAATCACAGCTTCTTCTTCACCTAAGAGGAGGAAAACTAGTACT 897 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 835 AGCGATAAGAGCATCACAATCACAGCTTCTTC---ACCTAAGAGGAGGAAAACTAGTACT 891 Query 898 CGTCG 902 ||||| Sbjct 892 CGTCG 896 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33700658628 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5