BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03280.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490231 jgi|Araly1|490231|fgenesh2_kg.6__3365__AT4G03280.1 1578 0.0
> Ahg490231 jgi|Araly1|490231|fgenesh2_kg.6__3365__AT4G03280.1
Length=1011
Score = 1578 bits (854), Expect = 0.0
Identities = 966/1017 (95%), Gaps = 20/1017 (2%)
Strand=Plus/Plus
Query 1 TGTGGCTATGTGGAAGCAGAGGCTGGCGCGTGCCTTATCTGCTTCTCTCTCTCCAGTGGT 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TGTGGCTATGTGGAAACAGAGGCTGGCGCGTGCCTTATCTGCTTCTCTCTCTTCAGTGGT 60
Query 61 CTCAAATCTCTCTGTGTGATCCCACTTGTCATCCTCCTCCACAACATAAAGCTTGAGACC 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CTGAAATCTCTCTGTGTGATCCCACTTGTCATCCTCCTCCACAACATAAAGCTTCAGACC 120
Query 121 ATAACCCTTTAGCGTTTTCGGCTAAAGCTTTCGCTGACTACTACAACAATGGCGTCCTCA 180
| |||||||||||||||||||||| |||||||| || |||||| |||||||||||||
Sbjct 121 AAAACCCTTTAGCGTTTTCGGCTAGAGCTTTCGATG---ACTACATCAATGGCGTCCTCC 177
Query 181 TCCCTTTCCCCTGCTACTCAGCTTGGTTCTAGCAGAAGTGCTTTGATGGCGATGTCAAGT 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 178 TCCCTTTCCCCTGCTACTCAGCTTGGTTCAAGCAGAAGTGCTTTGATGGCGATGTCGCGT 237
Query 241 GGGTTGTTTGTGAAGCCAACGAAGATGAATCATCAAATGGTTAGAAAAGAGAAGATTGGA 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 GGGTTGTTTGTGAAGCCAACGAAGACGAATCATCAAATGGTTAGAAAAGAGAAGATTGGA 297
Query 301 TTGAGAATTTCTTGTCAAGCGTCGAGTATTCCAGCAGACAGAGTTCCAGATATGGAAAAG 360
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 TTGAGAATTGCTTGTCAAGCGTCGAGTATTCCAGCAGACAGAGTCCCAGATATGGAAAAG 357
Query 361 AGGAAGAC-TTTGAATCTTCTTCTTCTTGGGGCTCTTTCTCTACCTACTGGCTACATGCT 419
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 AGGAAG-CTTTTGAATCTTCTTCTTGTTGGGGCTCTTTCTCTACCTACTGGCTACATGCT 416
Query 420 TGTCCCTTACGCTACCTTCTTTGTTCCTCCTGGAACCGGAGGTGGAGGTGGTGGTACTCC 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 TGTCCCTTACGCTACCTTCTTTGTTCCTCCTGGAACTGGAGGTGGAGGTGGTGGTACTCC 476
Query 480 AGCCAAGGATGCCCTTGGAAACGATGTAGTTGCAG-CGGAATGGCTTAAGACTCATGGTC 538
|||||| ||||| |||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 477 AGCCAAAGATGCACTTGGAAACGATGTAGTTGCTGAC-GAATGGCTTAAGACTCATGGTC 535
Query 539 CCGGTGACCGAACCTTGACCCAAGGATTAAAGGGAGATCCGACTTACCTAGTTGTAGAGA 598
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCGGTGACAGAACCCTGACCCAAGGATTAAAGGGAGATCCGACTTACCTAGTTGTAGAGA 595
Query 599 ACGACAAGACTCTAGCGACATACGGTATCAACGCAGTGTGCACTCATCTTGGATGTGTTG 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACGACAAGACTCTAGCAACATACGGTATCAACGCAGTGTGCACTCATCTTGGATGTGTTG 655
Query 659 TGCCATGGAACAAAGCTGAGAACAAGTTTCTATGTCCTTGCCATGGATCCCAATACAACG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGCCATGGAACAAAGCTGAGAACAAGTTTCTATGTCCTTGCCATGGATCCCAATACAACG 715
Query 719 CCCAAGGAAGAGTCGTTAGAGGTCCAGCCCCATTGTCGCTAGCGTTGGCTCACGCGGATA 778
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 716 CCCAAGGAAGAGTCGTTAGAGGTCCAGCGCCATTGTCGCTAGCGTTGGCTCACGCGGACA 775
Query 779 TAGATGA-AGCTGGGAAGGTTCTTTTTGTTCCATGGGTGGAAACTGACTTCAGGACTGGT 837
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 TAGATGATA-CTGGGAAGGTTCTTTTTGTACCATGGGTGGAAACTGACTTCAGGACTGGT 834
Query 838 GATGCTCCATGGTGGTCTTAAGACTCTTCAACAAG-----AA-AA-AGA-GAA-A--GAT 886
||||||||||||||||||||| | |||||||||| || || ||| ||| | |||
Sbjct 835 GATGCTCCATGGTGGTCTTAAAATTCTTCAACAAATCTTCAACAAGAGAAGAAGAAAGAT 894
Query 887 TTGGTCTTTTTGTGTAAGACTTGTTTGAATGTTCTTATAATGTATAAGCTACATTTCATC 946
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 895 TTGGTCTTTTTGTGTAAGACTTGTTTGAATGTTCTTATAATGTAAAAGCTACATTTCATG 954
Query 947 GCAATTACTCTGTGAATTCTTGCCTCTTATATGAAATATTATGTTCATTCACTTCCC 1003
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GCAATTACTCTGTGAATTCTTGCCTCTTATATGAAATATTATGTTCATTCACTTCCC 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5