BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03290.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943386 jgi|Araly1|943386|scaffold_603930.1 804 0.0
Ahg919305 jgi|Araly1|919305|scaffold_100586.1 401 3e-111
> Ahg943386 jgi|Araly1|943386|scaffold_603930.1
Length=508
Score = 804 bits (435), Expect = 0.0
Identities = 485/509 (95%), Gaps = 3/509 (1%)
Strand=Plus/Plus
Query 155 AAAAGCCCTAAATTTATTAAAACAAATGGATTCCACGGAGCTGAACCGTGTGTTCCAAAT 214
|||| |||| ||||| | |||||||||||||||||||||||| || ||||||||||||||
Sbjct 1 AAAA-CCCTCAATTT-TAAAAACAAATGGATTCCACGGAGCTAAAACGTGTGTTCCAAAT 58
Query 215 GTTCGACAAGGACGGAGACGGGAAGATCACTACGAAGGAGCTGAACGAGTCATTCAAGAA 274
||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||
Sbjct 59 GTTCGACAAGGACGGAGACGGTAGGATCACTACAAAGGAGCTGAACGAGTCATTAAAGAA 118
Query 275 CCTCGGTATCATAATACCCGAAGACGAACTAACACAAATTATCCAAAAGATCGATGTTAA 334
||| ||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 119 CCTGGGTATCATAATCCCCGAAAACGAGCTAACGCAAATTATCCAAAAGATCGATGTTAA 178
Query 335 TGGTGACGGTTGTGTTGACATTGAAGAGTTTGGAGAGCTCTACAAGACGATAATGGTAGA 394
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 179 TGGTGACGGTTGTGTTGACATTGAAGAGTTTGGAGAGCTTTACAAGACGATAATGGTTGA 238
Query 395 AGATGAGGACGAGGTAGGAGAAGAAGATATGAAGGAAGCGTTCAACGTATTTGATCGGAA 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGATGAGGACGAGGTAGGAGAAGAAGATATGAAGGAAGCGTTCAACGTATTTGATCGGAA 298
Query 455 CGGAGATGGGTTTATAACGGTGGATGAATTGAAAGCGGTTTTATCTTCCTTGGGACTCAA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGGAGATGGGTTTATAACGGTGGATGAATTGAAAGCGGTTTTATCTTCCTTGGGACTCAA 358
Query 515 GCAAGGTAAGACCTTGGAGGAATGTAGGAAGATGATAATGCAAGTGGATGTTGATGGTGA 574
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 359 GCAAGGTAAGACCTTGGAGGAATGTAGGAAAATGATAATACAAGTGGATGTTGATGGTGA 418
Query 575 TGGTAGGGTTAATTACATGGAGTTTAGACAAATGATGAAAAAGGGTCGcttttttagctc 634
|||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 TGGTAGGGTTGATTACAAGGAGTTTAGACAAATGATGAAAAAGGGTCGGTTTTTTAGCTC 478
Query 635 tttgagctgataataactttttttcttct 663
||||||||||| |||||||||||| ||||
Sbjct 479 TTTGAGCTGATTATAACTTTTTTT-TTCT 506
> Ahg919305 jgi|Araly1|919305|scaffold_100586.1
Length=494
Score = 401 bits (217), Expect = 3e-111
Identities = 407/496 (82%), Gaps = 23/496 (5%)
Strand=Plus/Plus
Query 171 TTAAAACAAATGGATTCC-ACGGAGCTGAACCGTGTGTTCCAAATGTTCGACAAGGACGG 229
|||||| | ||||| ||| || ||||| || |||||||||||||||||||||||| | ||
Sbjct 12 TTAAAAGAGATGGA-TCCGACAGAGCTAAAACGTGTGTTCCAAATGTTCGACAAGAATGG 70
Query 230 AGACGGGA-AGATCACTACGAAGGAGCTGAACGAGTCATTCAAGAA-CCTCGGTATCATA 287
||||||| | ||||| ||| ||||||| ||| || | || || |||||| || ||
Sbjct 71 CGACGGGACA-ATCACGGGGAAAGAGCTGAGTGAGACACTGAA-AAGCCTCGGGAT-TTA 127
Query 288 -ATACCCGA-AGACGAACTAACACAAATTATCCAAAAGATCGATGTTAATGGTGACGGTT 345
|| ||||| | | || | || ||||| ||| | |||||||| || ||||||||||| |
Sbjct 128 CATCCCCGACA-AGGAGTTGACTCAAATGATCGAGAAGATCGACGTGAATGGTGACGGGT 186
Query 346 GTGTTGACATTGAAGAGTTTGGAGAGCTCTACAAGACGATAATGGTAGAAGATGAGGACG 405
| || ||||| || |||||||| ||||| |||||||||||||| | || || || ||||
Sbjct 187 GCGTGGACATAGACGAGTTTGGTGAGCTTTACAAGACGATAAT-G--GACGAGGAAGACG 243
Query 406 AGGTAGGAGAAGAAGATATGAAGGAAGCGTTCAACGTATTTGATCGGAACGGAGATGGGT 465
| || |||||| || ||||||||||| ||||| || ||||||| ||| ||||||||||
Sbjct 244 A---AGAAGAAGAGGACATGAAGGAAGCTTTCAATGTGTTTGATCAGAATGGAGATGGGT 300
Query 466 TTATAACGGTGGATGAATTGAAAGCGGTTTTATCTTCCTTGGGACTCAAGCAAGGTAAGA 525
||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct 301 TTATAACCGTGGATGAATTGAAGGCGGTTTTGTCTTCCTTGGGGCTCAAACAAGGTAAGA 360
Query 526 CCTTGGAGGAATGTAGGAAGATGATAATGCAAGTGGATGTTGATGGTGATGGTAGGGTTA 585
||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CCTTGGATGATTGTAAGAAGATGATAAAGCAAGTGGATGTTGATGGTGATGGTAGGGTTA 420
Query 586 ATTACATGGAGTTTAGACAAATGATGAAAAAG-GGTCGcttttttagctctttg-agctg 643
| |||| ||||||||||||||||||||| | ||| | |||| || |||||| ||||
Sbjct 421 ACTACAACGAGTTTAGACAAATGATGAAAG-GCGGTGG-TTTT--AGTTCTTTGTAGCTA 476
Query 644 at-aataacttttttt 658
|| |||| |||||||
Sbjct 477 ATTAATATGTTTTTTT 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5