BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03298.1
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895660 jgi|Araly1|895660|Al_scaffold_0006_3656 665 0.0
> Ahg895660 jgi|Araly1|895660|Al_scaffold_0006_3656
Length=642
Score = 665 bits (360), Expect = 0.0
Identities = 574/672 (85%), Gaps = 36/672 (5%)
Strand=Plus/Plus
Query 9 ATGGTGACAACCACCGATCGTATCTCTCTTACATTCCTGGCCTCAAGGAACCAAAGTCCA 68
|||| |||||||| |||||||||||||| ||||||||| || |||||||| |||||| |
Sbjct 1 ATGGCGACAACCATCGATCGTATCTCTCGTACATTCCTAGCTTCAAGGAATCAAAGT-C- 58
Query 69 TCATATCTAAAGAAATACTTGAAACCAACAAGCTTATGTTGTTTCTCCAACTTTGGTTCA 128
|||| ||||| ||| |||||||||||| ||| | || |||||||||||||||||||||
Sbjct 59 -CATACCTAAACAAACACTTGAAACCAATAAG-GT-TG-TGTTTCTCCAACTTTGGTTCA 114
Query 129 CCATTCCCAAAATCAAGATTGACAATAATCTCGAGTTTGCAAAGAAAGATTGTTCCTCTT 188
||||||| | || | | | | ||||||||||||||||||||||||||
Sbjct 115 TCATTCCC---A--AA-A-T--C----A-----AGTTTGCAAAGAAAGATTGTTCCTCTC 156
Query 189 CTAGATGTGGACGTTGCATCA-C--CATCACCTTTCAACCAAATATTTGTTCATGACCGG 245
|||||||||||| |||||||| | ||||| | ||||||| ||||||||||||||||||
Sbjct 157 CTAGATGTGGACTTTGCATCATCATCATCATCAATCAACCATATATTTGTTCATGACCGG 216
Query 246 AGGCTAACAAAGCCTGTGAGTACACTGAGAGCATCTAAAGATGGA-AACTCGATCCCATC 304
|||||||||||||||||||| ||| ||||||||||||||||| || |||||||| || |
Sbjct 217 AGGCTAACAAAGCCTGTGAGAACATTGAGAGCATCTAAAGAT-GAGAACTCGAT-CC--C 272
Query 305 AATAGCAGCAAACGTATTGCTAAAGAGACTTTTCTTGACTTTTAACATAATCATTGGAAT 364
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 273 AGGAGCAGCAAACGTATTGCTAAAGAGACTTTTCTTGACTTTTAACATCATCATGGGAAT 332
Query 365 GCTTCTGTTCGCAATTAACGACTTCTTCCCATTGATTAAACTCAAT-GAACGGTTAGGGA 423
||||||||| ||||||| ||| ||||||||||||||| |||||||| || ||||||||||
Sbjct 333 GCTTCTGTTGGCAATTAGCGAGTTCTTCCCATTGATTGAACTCAATAGA-CGGTTAGGGA 391
Query 424 TGTCCTATATGATGGTGTTATGTTTTAGTTGCATATGGTGCCTTGTTGACAGCTTGGTGT 483
||| | |||||||||||| | || |||||||||||||||||||| ||||| || |||
Sbjct 392 TGTATTTTATGATGGTGTTCGGGTTAAGTTGCATATGGTGCCTTGTGGACAGTTTATTGT 451
Query 484 TCGTAATGGCAGGGATCTATCGTCTGATTCATGTAATC-TGTGCCACATTCAATTGGCCG 542
|||||||||||| |||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 452 GCGTAATGGCAGGAATCTATCGTCTGATTCATGTAATCATTT-CCACATTCAATTGGCCG 510
Query 543 GTTTTGAGATCCTTGTTTTACTACTCTTTCGTTGTTTTGAAAGAATTATTTCTTTTTTAT 602
||||||||| | ||| | |||||||||||| ||||||||||||||||| || ||||||||
Sbjct 511 GTTTTGAGAACGTTGCTCTACTACTCTTTCATTGTTTTGAAAGAATTACTTGTTTTTTAT 570
Query 603 TGTAAGCTAAGAATTTGCGAATTTTGCTTGGGCATGTGTAGTTTTGTCATAATGGTTTCT 662
|| |||||||||||||| |||||||| |||||||| | |||| |||| || || |||||
Sbjct 571 TGCAAGCTAAGAATTTGTGAATTTTGTTTGGGCATTTTTAGTCTTGTAATGATTCTTTCT 630
Query 663 TCGTTTAAATAA 674
|||||||||
Sbjct 631 GATTTTAAATAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26037952311
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5