BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03320.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490228 jgi|Araly1|490228|fgenesh2_kg.6__3362__AT4G03320.1 1426 0.0
> Ahg490228 jgi|Araly1|490228|fgenesh2_kg.6__3362__AT4G03320.1
Length=909
Score = 1426 bits (772), Expect = 0.0
Identities = 867/913 (95%), Gaps = 5/913 (1%)
Strand=Plus/Plus
Query 8 ttttttAATATCGAAACCCTAAAGCCTCGAAGGTTCTCTCGCCGGAGAAGAAATTATGCA 67
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1 TTTTTTACTATCGAAACCCTAAAGCCTCGAAGGTTCTTTCGCCGGAGAAAAAATTATGCA 60
Query 68 GGGTTTGGCGGCGACCACCACCAACCGTGGCTCTCTCACCTTCCTCGCTCCGAGGAACCA 127
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GGGTTTGGCGGCGACCACCACCAACCGTGGCTCTCTCACCTTCCTCGCTCCCAGGAACCA 120
Query 128 TAGTCCAATTTCAAAGAAATTTGTGAATCCAAGAGTGTTCTTTCCCAACGTTGATTCATC 187
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TAGTCCAATTTCAAAGAAACTTGTGAATCCAAGAGTGTTCTTCCCCAACGTTGATTCATC 180
Query 188 CGCAAAATTAAGATTATCAGCTAGCTCAATTTCACGGAGATGTCCACGAGAGATTGCTCC 247
| |||| |||||||| ||||||||||||||||| | ||||||||| ||||||||| ||||
Sbjct 181 CCCAAACTTAAGATTGTCAGCTAGCTCAATTTCCCAGAGATGTCCTCGAGAGATTACTCC 240
Query 248 TCTTTCAGCAACTGCATCTGTGGACTTTGCAGCAGCAGCAACATCATCC-AACCAGCTCT 306
|||| |||| |||||||||||||||||| |||||| | | ||||| || ||||||||||
Sbjct 241 TCTTACAGCGACTGCATCTGTGGACTTTTCAGCAG--G-ATCATCA-CCTAACCAGCTCT 296
Query 307 TTGCTAATGGCTTGCCACCATTAGCTCCTGGTTTGAGAAGACACCGGAGACCGATAGAGC 366
||||| ||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 297 TTGCTTATGGCTTTCCATCATTAGCTCCTGGTTTGAAAAGAAACCGGAGACCGATAGAGC 356
Query 367 CTGCAAGAGTGGCTAAAGATGACTTCTTTAAAATCAAACTGCCTAAAATCGCAGAGAGAC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTGCAAGAGTGGCTAAAGATGACTTCTTTAAAATCAAACTGCCTAAAATCGCAGAGAGAC 416
Query 427 CTGAATGGTGGTGGAGGACGTTAGCTTGTGTTCCTTATTTGATATCCCTCCAAATATCTG 486
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTGAATGGTGGTGGAGGACATTAGCTTGTGTTCCTTATTTGATATCCCTCCAAATATCTG 476
Query 487 ATGTTGGTTTCTATGTCCAACCTTTTCTCGAAAAGCACGACGCTATTGGGGACATGATAT 546
||||||| |||||||||||||| ||||| |||||||| || || ||||| ||||||||||
Sbjct 477 ATGTTGGGTTCTATGTCCAACCGTTTCTAGAAAAGCATGATGCGATTGGAGACATGATAT 536
Query 547 ATTTCATCCCGGGAGCGATAAACAGATGGCCGACATGGTTCTTCATGGTGTACTGCTACT 606
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 537 ATTTCATCCCGGGAGCGATAAACAGATGGCCAACCTGGTTCTTCATGGTGTACTGCTACT 596
Query 607 TGGGTTATATGTGGGTGGTGAAGAACAAAGAGCTGCCTCATTACTTGAGGTTTCACATGA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 TGGGTTATATGTGGGTGGTGAAGAACAAAGAGCTGCCTCATTACTTGAGGTTTCATATGA 656
Query 667 TGATGGGTATGCTTCTTGAAACAGCTCTTCAGGTCATATGGTGCACTAGCAATTTCTTCC 726
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 657 TGATGGGTATGCTTCTTGAAACGGCTCTTCAGGTCATATGGTGCACGAGCAATTTCTTCC 716
Query 727 CGCTGATTCATTTCAAAGGACGGTTCGGAATGTATTATTGGATGGCCATCGGATTCACCT 786
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 717 CGTTGATTCATTTCAAAGGACGGTTTGGGATGTATTATTGGATGGCCATCGGATTCACCT 776
Query 787 ACATATGTCTGCTTCTCGAATGCATACGGTGCGCTCTTGCTGGAGTCTATGCTCAGATTC 846
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 777 ACATATGTCTGCTTCTCGAATGCATACGGTGTGCTCTTGCTGGAGTCTATGCTCAGATTC 836
Query 847 CTTTCATGACAGATGCTGCTTCCATTCACACCCTCTTCAACTTGGGAGGTTTTCAGAGAC 906
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTTTCATGACAGATGCTGCATCCATTCACACCCTCTTCAACTTGGGAGGTTTTCAGAGAC 896
Query 907 CACTCAGGTGAAA 919
|||| ||||||||
Sbjct 897 CACTTAGGTGAAA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5