BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03320.1 Length=1262 Score E Sequences producing significant alignments: (Bits) Value Ahg490228 jgi|Araly1|490228|fgenesh2_kg.6__3362__AT4G03320.1 1426 0.0 > Ahg490228 jgi|Araly1|490228|fgenesh2_kg.6__3362__AT4G03320.1 Length=909 Score = 1426 bits (772), Expect = 0.0 Identities = 867/913 (95%), Gaps = 5/913 (1%) Strand=Plus/Plus Query 8 ttttttAATATCGAAACCCTAAAGCCTCGAAGGTTCTCTCGCCGGAGAAGAAATTATGCA 67 ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1 TTTTTTACTATCGAAACCCTAAAGCCTCGAAGGTTCTTTCGCCGGAGAAAAAATTATGCA 60 Query 68 GGGTTTGGCGGCGACCACCACCAACCGTGGCTCTCTCACCTTCCTCGCTCCGAGGAACCA 127 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 GGGTTTGGCGGCGACCACCACCAACCGTGGCTCTCTCACCTTCCTCGCTCCCAGGAACCA 120 Query 128 TAGTCCAATTTCAAAGAAATTTGTGAATCCAAGAGTGTTCTTTCCCAACGTTGATTCATC 187 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 121 TAGTCCAATTTCAAAGAAACTTGTGAATCCAAGAGTGTTCTTCCCCAACGTTGATTCATC 180 Query 188 CGCAAAATTAAGATTATCAGCTAGCTCAATTTCACGGAGATGTCCACGAGAGATTGCTCC 247 | |||| |||||||| ||||||||||||||||| | ||||||||| ||||||||| |||| Sbjct 181 CCCAAACTTAAGATTGTCAGCTAGCTCAATTTCCCAGAGATGTCCTCGAGAGATTACTCC 240 Query 248 TCTTTCAGCAACTGCATCTGTGGACTTTGCAGCAGCAGCAACATCATCC-AACCAGCTCT 306 |||| |||| |||||||||||||||||| |||||| | | ||||| || |||||||||| Sbjct 241 TCTTACAGCGACTGCATCTGTGGACTTTTCAGCAG--G-ATCATCA-CCTAACCAGCTCT 296 Query 307 TTGCTAATGGCTTGCCACCATTAGCTCCTGGTTTGAGAAGACACCGGAGACCGATAGAGC 366 ||||| ||||||| ||| |||||||||||||||||| |||| |||||||||||||||||| Sbjct 297 TTGCTTATGGCTTTCCATCATTAGCTCCTGGTTTGAAAAGAAACCGGAGACCGATAGAGC 356 Query 367 CTGCAAGAGTGGCTAAAGATGACTTCTTTAAAATCAAACTGCCTAAAATCGCAGAGAGAC 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CTGCAAGAGTGGCTAAAGATGACTTCTTTAAAATCAAACTGCCTAAAATCGCAGAGAGAC 416 Query 427 CTGAATGGTGGTGGAGGACGTTAGCTTGTGTTCCTTATTTGATATCCCTCCAAATATCTG 486 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 417 CTGAATGGTGGTGGAGGACATTAGCTTGTGTTCCTTATTTGATATCCCTCCAAATATCTG 476 Query 487 ATGTTGGTTTCTATGTCCAACCTTTTCTCGAAAAGCACGACGCTATTGGGGACATGATAT 546 ||||||| |||||||||||||| ||||| |||||||| || || ||||| |||||||||| Sbjct 477 ATGTTGGGTTCTATGTCCAACCGTTTCTAGAAAAGCATGATGCGATTGGAGACATGATAT 536 Query 547 ATTTCATCCCGGGAGCGATAAACAGATGGCCGACATGGTTCTTCATGGTGTACTGCTACT 606 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 537 ATTTCATCCCGGGAGCGATAAACAGATGGCCAACCTGGTTCTTCATGGTGTACTGCTACT 596 Query 607 TGGGTTATATGTGGGTGGTGAAGAACAAAGAGCTGCCTCATTACTTGAGGTTTCACATGA 666 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 597 TGGGTTATATGTGGGTGGTGAAGAACAAAGAGCTGCCTCATTACTTGAGGTTTCATATGA 656 Query 667 TGATGGGTATGCTTCTTGAAACAGCTCTTCAGGTCATATGGTGCACTAGCAATTTCTTCC 726 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 657 TGATGGGTATGCTTCTTGAAACGGCTCTTCAGGTCATATGGTGCACGAGCAATTTCTTCC 716 Query 727 CGCTGATTCATTTCAAAGGACGGTTCGGAATGTATTATTGGATGGCCATCGGATTCACCT 786 || |||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 717 CGTTGATTCATTTCAAAGGACGGTTTGGGATGTATTATTGGATGGCCATCGGATTCACCT 776 Query 787 ACATATGTCTGCTTCTCGAATGCATACGGTGCGCTCTTGCTGGAGTCTATGCTCAGATTC 846 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 777 ACATATGTCTGCTTCTCGAATGCATACGGTGTGCTCTTGCTGGAGTCTATGCTCAGATTC 836 Query 847 CTTTCATGACAGATGCTGCTTCCATTCACACCCTCTTCAACTTGGGAGGTTTTCAGAGAC 906 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 837 CTTTCATGACAGATGCTGCATCCATTCACACCCTCTTCAACTTGGGAGGTTTTCAGAGAC 896 Query 907 CACTCAGGTGAAA 919 |||| |||||||| Sbjct 897 CACTTAGGTGAAA 909 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47158048329 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5