BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03330.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490227 jgi|Araly1|490227|fgenesh2_kg.6__3361__AT4G03330.1 1803 0.0
> Ahg490227 jgi|Araly1|490227|fgenesh2_kg.6__3361__AT4G03330.1
Length=1215
Score = 1803 bits (976), Expect = 0.0
Identities = 1107/1171 (95%), Gaps = 6/1171 (1%)
Strand=Plus/Plus
Query 78 TTAAAGGTCTCTCTAGCTTCATGTCAACCATCTAAACCAACCACCATTAATGTTCCTCTG 137
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 50 TTAAAGGTCTCTCTAGCTTCATGCCAACCATCT--A--AACCACCATTAATGTTCCTCTG 105
Query 138 CCCATTTTCAAGAAATTAGAAATCATTTTTCTCTAAGTTCTTGATCGTCGCCATGAACGA 197
||||||| |||||||||||| | |||||||||||| ||||| |||||||||||||||||
Sbjct 106 CCCATTTCCAAGAAATTAGAGCTTATTTTTCTCTAATTTCTTAATCGTCGCCATGAACGA 165
Query 198 TCTTATCTCAAGCTCATTCAAGAGATACACAGACTTAAACCACCAGGTCCAACTCGATGA 257
||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 166 TCTAATCTCTAGTTCATTCAAGAGATACACAGACTTAAACCACCAAGTCCAACTCGATGA 225
Query 258 CATCGAGTCTCAAAATGTTTCTCTTGATTCAGGCAACCTCGATGAGTTCTTTGGATATGT 317
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 226 CATCGAGTCTCAAAATGTTTCTCTCGATTCAGGCAACCTCGATGAGTTCTTTGGATATGT 285
Query 318 CGAGAGTGTTAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGC 377
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CGAGAGTGTCAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGC 345
Query 378 TAATGAAGAGTCCAAGACCGTACATGATTCCAAGGCCGTGAAGAAGCTTCGTGCTCGTAT 437
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 346 TAATGAAGAGTCCAAGACCGTACATGACTCCAAGGCCGTTAAAAAGCTTCGTGCTCGTAT 405
Query 438 GGATTCGAGTGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGACTAAGCTTGTAGC 497
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 406 GGATTCGAATGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGTCGAAGCTTGTGGC 465
Query 498 TTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGC 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGC 525
Query 558 TGATCGGACCAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGA 617
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TGATCGGACAAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGA 585
Query 618 TGATTTTCAGAGACTACGAACCAAAATGGCTACTGAATACAAAGAAACGGTCGAGAGAAG 677
|||||||||||||||| ||||||||||||||||||| || |||||||| || |||||| |
Sbjct 586 TGATTTTCAGAGACTAAGAACCAAAATGGCTACTGAGTATAAAGAAACAGTTGAGAGACG 645
Query 678 GTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACGGTCGAGAAGCTCATATCGAG 737
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 646 GTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACAGTCGAGAAGCTCATATCGAG 705
Query 738 CGGAGAGAGCGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAGGTCAT 797
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 706 CGGAGAGAGTGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAAATAAT 765
Query 798 GGACACATTATCAGAGATTCAAGAACGACACGACACGGTCAAGGAGATAGAACGGAGTCT 857
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 766 GGACACATTATCAGAGATTCAAGAACGACACGACACGGTTAAAGAGATAGAACGGAGTCT 825
Query 858 GTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTCGAAGCTCAAGGGAATAT 917
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 826 GTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTTGAAGCTCAAGGGAATAT 885
Query 918 GCTCAATGACATTGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGA 977
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GCTCAACGACATCGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGA 945
Query 978 TCAATTGCATGGGGCTAAAGTACTTCAGAGGAACAACA-GGAAATGGGCTTGTATCGCCA 1036
||||||||| |||||||||||||||||||||||| || |||||||| ||||||| ||||
Sbjct 946 TCAATTGCACGGGGCTAAAGTACTTCAGAGGAACT-CAAGGAAATGGACTTGTATTGCCA 1004
Query 1037 CTATCCTCGCTATTGTAGTTGTTATTGTGATTCTTTTCCCAATCCTCTTTAACACTCTAC 1096
|||||||||||||||| |||||||||||||||||||||||||||||| || || | |||
Sbjct 1005 TTATCCTCGCTATTGTACTTGTTATTGTGATTCTTTTCCCAATCCTCTATACCAATGTAC 1064
Query 1097 TTCGACCTTGATTTCAAAATGTAACTTATTGTTTTCTCCAAACTCCTTTTGTTAGAGCCC 1156
|| ||||||||||||||| | ||||| ||||||||| ||||||| ||||||||||||||
Sbjct 1065 TTAAACCTTGATTTCAAAAGGCAACTTCTTGTTTTCTTCAAACTCTTTTTGTTAGAGCCC 1124
Query 1157 TTTCGATTTCTTGTATTGAATCCAGAGCTGAAGCGAGAGTTTAATTTGAAGCTCTCTCTA 1216
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1125 TTTCAATTTCTTGTATTGAATCCAGAGCTGAAGCGAGAGTTTAATTTAAAGCTCTCTCTA 1184
Query 1217 ACCATTCTTGCTACTGTAATTGCTTTATATC 1247
||||||||||||| |||||||||||| ||||
Sbjct 1185 ACCATTCTTGCTATTGTAATTGCTTTGTATC 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5