BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03330.1 Length=1252 Score E Sequences producing significant alignments: (Bits) Value Ahg490227 jgi|Araly1|490227|fgenesh2_kg.6__3361__AT4G03330.1 1803 0.0 > Ahg490227 jgi|Araly1|490227|fgenesh2_kg.6__3361__AT4G03330.1 Length=1215 Score = 1803 bits (976), Expect = 0.0 Identities = 1107/1171 (95%), Gaps = 6/1171 (1%) Strand=Plus/Plus Query 78 TTAAAGGTCTCTCTAGCTTCATGTCAACCATCTAAACCAACCACCATTAATGTTCCTCTG 137 ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| Sbjct 50 TTAAAGGTCTCTCTAGCTTCATGCCAACCATCT--A--AACCACCATTAATGTTCCTCTG 105 Query 138 CCCATTTTCAAGAAATTAGAAATCATTTTTCTCTAAGTTCTTGATCGTCGCCATGAACGA 197 ||||||| |||||||||||| | |||||||||||| ||||| ||||||||||||||||| Sbjct 106 CCCATTTCCAAGAAATTAGAGCTTATTTTTCTCTAATTTCTTAATCGTCGCCATGAACGA 165 Query 198 TCTTATCTCAAGCTCATTCAAGAGATACACAGACTTAAACCACCAGGTCCAACTCGATGA 257 ||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 166 TCTAATCTCTAGTTCATTCAAGAGATACACAGACTTAAACCACCAAGTCCAACTCGATGA 225 Query 258 CATCGAGTCTCAAAATGTTTCTCTTGATTCAGGCAACCTCGATGAGTTCTTTGGATATGT 317 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 226 CATCGAGTCTCAAAATGTTTCTCTCGATTCAGGCAACCTCGATGAGTTCTTTGGATATGT 285 Query 318 CGAGAGTGTTAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGC 377 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 CGAGAGTGTCAAAGAAGACATGAAAGCTGTCGACGAGATTCATAAGCGTCTCCAAGATGC 345 Query 378 TAATGAAGAGTCCAAGACCGTACATGATTCCAAGGCCGTGAAGAAGCTTCGTGCTCGTAT 437 ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 346 TAATGAAGAGTCCAAGACCGTACATGACTCCAAGGCCGTTAAAAAGCTTCGTGCTCGTAT 405 Query 438 GGATTCGAGTGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGACTAAGCTTGTAGC 497 |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 406 GGATTCGAATGTTACAGAGGTCTTGAAACGTGTCAAGATGATAAAGTCGAAGCTTGTGGC 465 Query 498 TTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGC 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 TTTGGAGAAATCAAATGCTGCGCAGAGGAAAGTCGCTGGTTGTGGTCCTGGCTCGTCTGC 525 Query 558 TGATCGGACCAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGA 617 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 TGATCGGACAAGAACATCGGTCGTTAGTGGATTGGGGAAGAAGCTTAAAGACATGATGGA 585 Query 618 TGATTTTCAGAGACTACGAACCAAAATGGCTACTGAATACAAAGAAACGGTCGAGAGAAG 677 |||||||||||||||| ||||||||||||||||||| || |||||||| || |||||| | Sbjct 586 TGATTTTCAGAGACTAAGAACCAAAATGGCTACTGAGTATAAAGAAACAGTTGAGAGACG 645 Query 678 GTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACGGTCGAGAAGCTCATATCGAG 737 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 646 GTACTTCACTGTAACGGGGCAAAAAGCGGACGAAGAGACAGTCGAGAAGCTCATATCGAG 705 Query 738 CGGAGAGAGCGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAGGTCAT 797 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 706 CGGAGAGAGTGAACGTTTTCTCCAAAAAGCAATACAAGAGCAAGGTCGCGGACAAATAAT 765 Query 798 GGACACATTATCAGAGATTCAAGAACGACACGACACGGTCAAGGAGATAGAACGGAGTCT 857 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 766 GGACACATTATCAGAGATTCAAGAACGACACGACACGGTTAAAGAGATAGAACGGAGTCT 825 Query 858 GTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTCGAAGCTCAAGGGAATAT 917 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 826 GTTAGAGCTGCACCAAGTGTTCCTCGACATGGCTGCTCTTGTTGAAGCTCAAGGGAATAT 885 Query 918 GCTCAATGACATTGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGA 977 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 GCTCAACGACATCGAATCAAATGTCTCAAAGGCGAGCTCTTTCGTCATGAGAGGGACTGA 945 Query 978 TCAATTGCATGGGGCTAAAGTACTTCAGAGGAACAACA-GGAAATGGGCTTGTATCGCCA 1036 ||||||||| |||||||||||||||||||||||| || |||||||| ||||||| |||| Sbjct 946 TCAATTGCACGGGGCTAAAGTACTTCAGAGGAACT-CAAGGAAATGGACTTGTATTGCCA 1004 Query 1037 CTATCCTCGCTATTGTAGTTGTTATTGTGATTCTTTTCCCAATCCTCTTTAACACTCTAC 1096 |||||||||||||||| |||||||||||||||||||||||||||||| || || | ||| Sbjct 1005 TTATCCTCGCTATTGTACTTGTTATTGTGATTCTTTTCCCAATCCTCTATACCAATGTAC 1064 Query 1097 TTCGACCTTGATTTCAAAATGTAACTTATTGTTTTCTCCAAACTCCTTTTGTTAGAGCCC 1156 || ||||||||||||||| | ||||| ||||||||| ||||||| |||||||||||||| Sbjct 1065 TTAAACCTTGATTTCAAAAGGCAACTTCTTGTTTTCTTCAAACTCTTTTTGTTAGAGCCC 1124 Query 1157 TTTCGATTTCTTGTATTGAATCCAGAGCTGAAGCGAGAGTTTAATTTGAAGCTCTCTCTA 1216 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1125 TTTCAATTTCTTGTATTGAATCCAGAGCTGAAGCGAGAGTTTAATTTAAAGCTCTCTCTA 1184 Query 1217 ACCATTCTTGCTACTGTAATTGCTTTATATC 1247 ||||||||||||| |||||||||||| |||| Sbjct 1185 ACCATTCTTGCTATTGTAATTGCTTTGTATC 1215 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46776819159 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5