BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03340.1
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352501 jgi|Araly1|352501|fgenesh1_pg.C_scaffold_6003094 2213 0.0
Ahg919018 jgi|Araly1|919018|scaffold_100299.1 1062 0.0
> Ahg352501 jgi|Araly1|352501|fgenesh1_pg.C_scaffold_6003094
Length=1350
Score = 2213 bits (1198), Expect = 0.0
Identities = 1301/1351 (96%), Gaps = 5/1351 (0%)
Strand=Plus/Plus
Query 616 ATGAAGAAAGTGTATAGGAAGCTGATTTGGATCAGAGACCCATTAGCGAGATTGAAGAGA 675
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAAGAAAGTGTATAGGAAGCTGATTTGGATCAGAGACCCATTAGCGAGAGTGAAGAGA 60
Query 676 CATGTTAGTTCACATTCAGGGTTTAGGTTTTTCAGAGAT---AGAAAATGGATGTTCCCT 732
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 61 CATGTTAGTTCACATTCAGGGTTTAGGGTTTTCAGAGATAGAAGAAAATGGATGTTCCCG 120
Query 733 TTTTTAGCAAGCTTGGTTTTGTCGGTTACTCTTTTGATGTCTGTCCTTTATGTCCAACTC 792
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 121 TTTTTAGCAAGCTTTGTTTTGTCGGTTACTCTTTTGATGTCTGTCATTTATGTCCAATTC 180
Query 793 GAGACTTCTTATGTGGAAGAGCCATTGCCTTTTGATAATCTCTCAGAAGAAACAAATGAT 852
|| ||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||
Sbjct 181 GACACTTCTTATGTGGAAGAACCATTGCCTTTTGATAATGTCTTAGAAGAATCAAATGAT 240
Query 853 TACTTTGTAGAATCACAATTGAGAATGTCTTTGAATTCGACGTTGG-ATTCGACTTCTTC 911
|||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||
Sbjct 241 TACTTTGTAGAATCACGTTTGAGAATGTCTTTGAATTCGACG-GGGAATTCGAATTCTTC 299
Query 912 AGAGGTTCCTAGGTTAGCTTATTTGATCTCGGGGACGAAAGGTGATAGTCTTAGGATGAT 971
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAGGTTCCTAGGTTAGCTTATCTGATCTCGGGGACGAAAGGTGATAGTCTTAGGATGAT 359
Query 972 GAGGACTTTGCAAGCTGTGTATCATCCAAGAAATCAGTATGTTCTGCATTTGGATCTTGA 1031
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 360 GAGGACTTTGCAAGCTGTGTATCATCCAAGAAATCAATATGTTCTGCATTTGGATCTCGA 419
Query 1032 AGCTCCTCCTAAGGAAAGGCTTGAGCTTGCAATGTCTGTGAAGAGTGATCAAACTTTCCG 1091
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 420 AGCTCCTCCTAAGGAAAGGCTTGAACTTGCAATGTCTGTGAAGAGTGATCCGACTTTCCG 479
Query 1092 TGAAGTTGAGAACGTTCGTGTTATGTCTCAGTCTAATTTGGTTACTTATAAAGGCCCTAC 1151
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 TGAATTTGAGAACGTTCGTGTTATGTCTCAGTCTAATCTGGTTACTTATAAAGGCCCTAC 539
Query 1152 AATGATTGCTTGCACGCTTCAGGCCGTGGCGATTTTGCTTAAAGAAAGCTTGGATTGGGA 1211
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 AATGATTGCTTGTACGCTTCAGGCCGTGGCGATTTTGCTTAAAGAAAGTTTGGATTGGGA 599
Query 1212 TTGGTTCATCAATCTTAGTGCCTCGGATTATCCTCTTGTGACACAAGATGATATGCTGTA 1271
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 TTGGTTCATCAACCTTAGTGCCTCGGATTATCCTCTCGTGACACAAGATGATATGCTGTA 659
Query 1272 TGTGTTTGCGAATTTGTCTCGGAATGTCAATTTCATTGAACATATGAAGCTCACCGGGTG 1331
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTCTTCGCGAAATTGTCTCGGAATGTCAATTTCATTGAACATATGAAGCTCACCGGGTG 719
Query 1332 GAAACTGAACCAAAGGGCCAAATCAATCATTGTTGATCCCGGTCTTTACCTATCGAAGAA 1391
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 GAAACTGAACCAGAGGGCCAAATCAATCATTGTTGATCCCGGTCTGTACCTATCGAAGAA 779
Query 1392 AACCGAAATTGCTTGGACTACTCAACACCGTTCACTTCCCACATCTTTCACGCTGTTCAC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACCGAAATTGCTTGGACTACTCAACACCGTTCACTTCCCACATCTTTCACGCTGTTCAC 839
Query 1452 AGGCTCGGCGTGGGTAGTTCTGACTCGGTCTTTTCTTGAATACTCAATCTTGGGATGGGA 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGGCTCGGCGTGGGTAGTTCTGACTCGGTCTTTTCTTGAATACTCAATCTTGGGATGGGA 899
Query 1512 CAATTTTCCGAGGACGATCTTGATGTACTACACCAACTTTGTATCCTCTCCAGAAGGATA 1571
|||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||
Sbjct 900 TAATTTTCCGAGGACAATATTAATGTACTACACCAACTTTGTATCCTCTCCAGAAGGGTA 959
Query 1572 CTTTCACACACTGATATGTAACACTGAAGAGTTCAAGAGCACCGCGATTGGGCATGACCT 1631
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTTTCACACAGTCATATGTAACACTGAAGAGTTCAAGAGCACCGCGATTGGGCATGACCT 1019
Query 1632 GCACTACATTGCTTGGGACTATCCTCCAAAGCAACACCCAAACTCTTTATCGATGAAGGA 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCACTACATTGCTTGGGACTATCCTCCAAAGCAACACCCAAACTCTTTATCGATGAAGGA 1079
Query 1692 TTTCGACAAGATGGTCAAAAGCAAAGCCCCATTTGCTCGAAAGTTCCACAAGAACGATCC 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTTCGACAAGATGGTCAAAAGCAAAGCCCCATTTGCTCGAAAGTTCCACAAGAACGATCC 1139
Query 1752 TGTATTAGACAAGATCGATAGAGAGCTCTTAGGCCGCACTCATCGGTTTTCCTCAGGAGC 1811
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1140 TGTATTAGACAAGATCGATAGAGAGCTCTTAGGCCGCACTCATCGGTTTTCCTCAGGATC 1199
Query 1812 TTGGTGCATTGGTAGCTCGGAAAATGGCGCTGATCCGTGCTCTGTCCGCGGGGATGACTC 1871
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 TTGGTGCATTGGTAGCTCGGAAAATGGCGCTGATCCGTGCTCTGTCCGGGGGGATGACTC 1259
Query 1872 TGCTTTGAAACCAGGCCCTGGTGCTGAGAGATTAAAGGAGCTTCTTCAGACACTTTTATC 1931
|| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1260 TGTTTTGAAACCAGGCCCTGGTGCGGAGAGATTAAAGGAGCTTGTTCAGACACTTTTATC 1319
Query 1932 TGATGAGTTCAGAATAAAACAATGTTCATGA 1962
|||||||||||||| ||||||||||||||||
Sbjct 1320 TGATGAGTTCAGAACAAAACAATGTTCATGA 1350
> Ahg919018 jgi|Araly1|919018|scaffold_100299.1
Length=1384
Score = 1062 bits (575), Expect = 0.0
Identities = 1125/1383 (81%), Gaps = 67/1383 (5%)
Strand=Plus/Plus
Query 612 ggggATGAAG-AAAGTGTATAGGAAGCTGATTTGGA-TCAGAGACCCATTAGCGAGATTG 669
||| ||| || ||| |||||||||||||| ||| | |||||||||| || || || ||
Sbjct 17 GGGAATG-AGAAAATTGTATAGGAAGCTGGTTT-CATTCAGAGACCCTTTTGCTAGGGTG 74
Query 670 AAGAGACATGTTAGTTCACATTCAGGGTTTAG-GTTTTTCAGAGATAGAAAATGGATGTT 728
|||||||||||||||||||| |||||| |||| | |||||| || ||||||||||||||
Sbjct 75 AAGAGACATGTTAGTTCACACTCAGGGATTAGAG-CTTTCAGCGACAGAAAATGGATGTT 133
Query 729 CCCTTTTTTAGCAAGCTTGGTTTTGTCGGTTACTCTTTTGATGTCTG-TCCTTTATGTCC 787
||||||| ||||||||||| | ||||| ||||||| |||| | || | | | || ||
Sbjct 134 CCCTTTTCTAGCAAGCTTGATCATGTCGATTACTCTCCTGAT-TTTGTTAATCTCTGGCC 192
Query 788 AACTCGA-GACTTCTTATGTGGAAG-AG--CCATTGCCTTTTGATAATCTCTCAGAAGAA 843
|| |||| | |||| |||| ||||| || | ||| || || ||| | | |||| ||
Sbjct 193 AATTCGACGGCTTC-TATGGGGAAGAAGATCAATTACCATTAGATGTTGTTTCAG-AG-- 248
Query 844 ACAAATGATTACTTTGTAGAATCACAATTGAGAA-TGTCTTTGAATTCGAC-GTTGGATT 901
| ||||| ||||||||||||||| | || | || |||||||||||||| | | || |
Sbjct 249 TCTAATGAGTACTTTGTAGAATCAGATTTCA-AACAATCTTTGAATTCGACGGCT-GA-T 305
Query 902 CGACTT-CTTCAGAGG-TTCCTAGGTTAGCTTATTTGATCTCGGGGACGAAAGGTGATAG 959
| || || || || ||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 306 -G--TTAATTTAG-GGCCTCCTAGGTTAGCTTATTTGATATCGGGAACAAAAGGCGATAG 361
Query 960 TCTTAGGATGATGAGGACTTTGCAAGCTGTGTATCATCCAAGAAATCAGTATGTTCTGCA 1019
|| |||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||
Sbjct 362 TCATAGGATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAATATGTTCTGCA 421
Query 1020 TTTGGATCTTGAAGCTCCTCCTAAG-GAAAGGCTTGAGCTTGCAATGTCTGTGAAGAGTG 1078
|||||||||||| ||||| ||| | ||| || | ||||| || ||||| ||||||||||
Sbjct 422 TTTGGATCTTGAGGCTCCACCT-CGTGAACGGATGGAGCTGGCGATGTCCGTGAAGAGTG 480
Query 1079 ATCAAACTTTCCGTGAAGTTGAGAACGTTCGTGTTATGTCTCAGTCTAAT-TTGGTTACT 1137
||| |||||||||||| | ||||| |||||||| ||||||||||||||| || ||||||
Sbjct 481 ATCCGACTTTCCGTGAAATGGAGAATGTTCGTGTGATGTCTCAGTCTAATCTT-GTTACT 539
Query 1138 TATAAAGGCCCTACAATGATTGCTTGCACGCTTCAGGCCGTGGCGATTTTGCTTAAAGAA 1197
||||||||||||||||||||||| || || ||||| ||||| || |||||||| | |||
Sbjct 540 TATAAAGGCCCTACAATGATTGCGTGTACTCTTCAAGCCGTTGCAATTTTGCTGAGGGAA 599
Query 1198 AGCTTGGATTGGGATTGGTT-CATCAATCTTAGTGCCTCGGATTATCCTCTTGTGACACA 1256
||||| ||||||||||||| | | || ||||| ||||||||||||||||| || |||||
Sbjct 600 AGCTTACATTGGGATTGGTTTCTT-AACCTTAGCGCCTCGGATTATCCTCTAGTAACACA 658
Query 1257 AGATGATATGCTGTATGTGTT-TGCGAATTTGTCTCGGAATGTCAATTTCATTGA-ACAT 1314
||||||| || ||||||| || | | ||| |||||||||||||||||||||| || | ||
Sbjct 659 AGATGATTTGTTGTATGTCTTCT-CAAATCTGTCTCGGAATGTCAATTTCATCGAGA-AT 716
Query 1315 ATGAAGCTCACCGGGTGGAAACTGAACCAAAGGGCCAAATCAATCATTGTTGATCCCGGT 1374
||| |||||||||| ||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 717 ATGCAGCTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCC 776
Query 1375 CTTTACCTATCGAAGAAAACCGAAATTGCTTGGACTACTCAAC-ACCGTTCACTTCCCAC 1433
|| ||||||||||||||| |||| ||||||||||||||||||| || | |||||||| |
Sbjct 777 CTATACCTATCGAAGAAATCCGATATTGCTTGGACTACTCAACGAC-GATCACTTCCAA- 834
Query 1434 AT-CTTTCACGCTGTTCACAGGCTCGGCGTGGGTAGT-TCTGACTCGGTCTTTTCTTGAA 1491
|| |||||| ||| ||||| ||||| || ||| || | | ||||||||||||| || ||
Sbjct 835 ATTCTTTCAAGCTATTCACCGGCTCAGCTTGGATAATGT-TGACTCGGTCTTTCCTCGAG 893
Query 1492 TACT-CAATCTTGGG-ATGGGACAATTTTCCGAGGACGAT-CTTGATGTACTACACCAAC 1548
|||| || | ||||| |||||| || || || || || || || ||||||||||| ||
Sbjct 894 TACTGCA-T-TTGGGGATGGGATAACTTCCCAAGAACAATACTA-ATGTACTACACGAA- 949
Query 1549 TTT-GTATCCTCTCCAGAAGGATACTTTCACACACTGATATGTAACA-CTGAAGAGTTCA 1606
||| || |||||||| ||||||||||| || ||| | || || |||| | |||||||
Sbjct 950 TTTCGTGTCCTCTCCTGAAGGATACTTCCATACAGTAATCTGCAACAGCA-AAGAGTTTG 1008
Query 1607 AGAGCACCGCGATTGGGCATGACCTGCACTACATTGCTTGGGACTA-TCCTCCAAAGCAA 1665
| |||||||||||||||||| || |||||||||||||||||| | |||||||||||||
Sbjct 1009 TCAACACCGCGATTGGGCATGATCTACACTACATTGCTTGGGAC-AGTCCTCCAAAGCAA 1067
Query 1666 CACCCAA-ACTCTTTATCGAT-GAAGGATTTCGACAAGATGGTCAAAAGCAAAGCCCCAT 1723
||||| | | ||| | || || ||||||||||||||| ||||||||||||||||| ||||
Sbjct 1068 CACCCTAGA-TCTCTCTC-ATTGAAGGATTTCGACAATATGGTCAAAAGCAAAGCTCCAT 1125
Query 1724 TTGCTCGAAAGTTCCACAAGAACGATCCTGTATTAGACAAGATCGATAGAGAGCTCTTAG 1783
|||| || |||||||||||||||||||||| |||||||||||||||| |||||| || |
Sbjct 1126 TTGCACGCAAGTTCCACAAGAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGG 1185
Query 1784 GCCGCACTCATCGG-TTTTCCTC-AGGAGCTTGGTGCATTGGTAGCTCGGAAAATGGCGC 1841
| || || || | | ||||| || ||||| ||||| ||||| || || | ||||||
Sbjct 1186 GACGGACACA-CAGATTTTC-TCCAGGAGGATGGTGTATTGGGAGTTCAGCTAATGGCAA 1243
Query 1842 TGATCCGTGCTCTGTCCGCGGGGATGACTCTGCT-TTGAAACCAGGCCCTGGTGCTG-AG 1899
||||||||||||||| | || || ||||| | | |||||||| || |||||| ||| |
Sbjct 1244 TGATCCGTGCTCTGTGCAAGGCGACGACTCGG-TGTTGAAACCTGGACCTGGTTCTGCA- 1301
Query 1900 AGATTAAAGGAGCTTCTTCAGACACTTTTATCTGATGAGTTCAGAATAAAACAATGTTCA 1959
|| || |||||||| |||||||||||| |||||||| || || | |||||| |||||
Sbjct 1302 AGGTTGCAGGAGCTTGTTCAGACACTTTCCTCTGATGAATTTAGGAGAAAACAGTGTTCT 1361
Query 1960 TGA 1962
|||
Sbjct 1362 TGA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78999168130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5