BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03380.1

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg338829 jgi|Araly1|338829|fgenesh1_pg.C_scaffold_2000928           265    3e-70


> Ahg338829 jgi|Araly1|338829|fgenesh1_pg.C_scaffold_2000928
Length=501

 Score =  265 bits (143),  Expect = 3e-70
 Identities = 167/179 (93%), Gaps = 0/179 (0%)
 Strand=Plus/Plus

Query  48   GGTACAATATTTGGTAGTTACGAACAAGGGAGATCACAAACCTTTGAATGTAGGTACTAT  107
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct  153  GGTACCATATTTGGTAGTTAAGAACAAGGGAGATCACAAACCTTTGAATGTAGGTGCTAT  212

Query  108  GCTATTGATCACTGAAACAAAAGTCCCATTAGGTCGTGTGGATGGGTACTTCTTTGGATC  167
            ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  213  GCTCTTGATCACTGAAACAAAAGCCCCATTGGGTCGTGTGGATGGGTACTTCTTTGGATC  272

Query  168  TGTAACGAATCCTGACTATATTGTGAAAGTGGAGGATTCAGAGATGCAAATCCCTGAAG  226
            ||||||||||||| |||||||||||| | ||| |||||||||||||||| ||||| |||
Sbjct  273  TGTAACGAATCCTCACTATATTGTGAGATTGGCGGATTCAGAGATGCAAGTCCCTCAAG  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22092086031


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5