BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03390.1
Length=3250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490225 jgi|Araly1|490225|fgenesh2_kg.6__3359__AT4G03390.1 4604 0.0
Ahg932972 jgi|Araly1|932972|scaffold_400960.1 174 3e-42
> Ahg490225 jgi|Araly1|490225|fgenesh2_kg.6__3359__AT4G03390.1
Length=3176
Score = 4604 bits (2493), Expect = 0.0
Identities = 2799/2939 (95%), Gaps = 52/2939 (2%)
Strand=Plus/Plus
Query 4 TGAAGAACTTAAACTCTGTCTTAAACCCAAATAATTTCTGAATTTCTCCAGTTCTTTCTT 63
|||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 TGAAGAACTTTAACTCTTTCTTAAACCC--A-AATTTCTGAATTTCTCCAGTTCTTTCTT 57
Query 64 CTTAATTTGCAGGTTTTGGTCCCACCGCTTAAATTAGGAAAAAGTTTCC-TTTTTCGTTC 122
||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 58 CTTAATTCGCAGGTTTTGGTCCCTCCGCTGAAATTAGGAAAAAGTTTCCTTTTTTCGTTC 117
Query 123 TGGGTTTTCTTC-TCTGATTATTATGATT--CATTCCTCGAGTGTCGAGCTTTATTCTCA 179
|||||||| || | | || | ||||| ||||||||||||||||||||||||||||
Sbjct 118 TGGGTTTTGGTCTTTTTCTT-CTCTGATTAGTATTCCTCGAGTGTCGAGCTTTATTCTCA 176
Query 180 AGTGTCAAATTATT--GAGGGTAAAATTTACTTCAACGACGAAAGTTCATTGAACCTTAG 237
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGTGTCAAATTATTGAGAGGGTAAAATTTACTTCAACGACGAAAGTTCATTGAACCTTAG 236
Query 238 CTCTTACGTTGCGTCTTAAATCTCATTCTCACCCAC---aa-aaaaaGA-AAAGTTTGCA 292
|||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||
Sbjct 237 CTCTTACGTTGCGTCTTAAATCTCATTCTCACCCACATAAACAAAAACATAAAGTTTGCA 296
Query 293 ttttttttATCTCTCAGGATTGGGTTTTT-GGGAATTTAAAGGAAAAGACTTTACCCTTT 351
|||| | | |||||||||||||||| ||||||||||||| | | | || | ||
Sbjct 297 ----TTTT-T-T-TCAGGATTGGGTTTTTGGGGAATTTAAAGG-ACA-A---TA--C-TT 341
Query 352 TATTCGTTTTAATTTCACCAACCCATTAAAGCTCGTTGATGACGATTCCTCTGCTTTTCC 411
|| | |||| ||||||||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct 342 TA--CCTTTT--TTTCACCAA-CCATT-GAGCTCGTTGATGACGATCCCTCTACTTTTCC 395
Query 412 AATTCGTGGACATCGTTTTGTTCGATTGATGT-TTCG-TTTT-ACTCTACTCTGACTTGG 468
||||||| |||||||||||||||||||||||| || | |||| |||| ||||||||||||
Sbjct 396 AATTCGTAGACATCGTTTTGTTCGATTGATGTGTT-GCTTTTAACTCCACTCTGACTTGG 454
Query 469 AACAATGGCTGCTAAGAGATCTATCTACTGTCTTCTTCTTCTTCCTCTGCTCTTGTCTTT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AACAATGGCTGCTAAGAGATCTATCTACTGTCTTCTTCTTCTTCCTCTGCTCTTGTCTTT 514
Query 529 ACTGATCTGGATTCCTTCGATCTCCTTAGCTGCTACTAACCCTGATGATGTTGCTGCAAT 588
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 515 ACTGATCTGGATTCCTTCGATCTCTTTAGCTGCTACTAACCCTGCTGATGTTGCTGCAAT 574
Query 589 TAACGGATTATTCGCTGCACTTGGAGCACCTGTTCTTCCTGGTTGGATTGCTTCTGGTGG 648
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 575 TAACGGATTATTCGCTGCCCTTGGCGCACCTGTTCTTCCTGGTTGGATTGCTTCTGGTGG 634
Query 649 AGACCCATGTGGTGAAGCTTGGCAAGGCATTATCTGCAATGTTTCAGATATTATAAGCAT 708
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 635 AGACCCATGTGGTGAAGCTTGGCAAGGCATTATCTGCAATGTTTCAGATATAATAAGCAT 694
Query 709 AACTGTAAATGCTGCAAATTTGCAAGGAGAGCTTGGTGACAACTTAGCTAAGTTCACTTC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AACTGTAAATGCTGCAAATTTGCAAGGAGAGCTTGGTGACAACTTAGCTAAGTTCACTTC 754
Query 769 TATCAGGGGAATAGATTTCAGCAACAATCGCATTGGAGGAAGCATACCTTCTACTTTGCC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 755 TATCAGGGGAATAGATTTCAGCAACAATCGCATTGGAGGAAGCATACCTTCTACTTTACC 814
Query 829 GGTTACATTGCAGCAtttttttCTTTCAGCTAATCAGTTCACCGGAAGCATCCCGGAATC 888
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 815 GGTTACATTGCAGCATTTTTTTCTTTCAGCTAATCAGTTCACCGGAAGTATCCCAGAATC 874
Query 889 TCTAGGAACATTGAGTTTTCTGAATGACATGTCTTTGAACGATAACCTTCTCTCTGGAGA 948
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 875 TCTAGGAACATTGAGTTTTCTGAATGACATGTCTTTGAACGATAACCTTCTCTCAGGAGA 934
Query 949 GCTACCCGACGTGTTTCAAAACCTTGTCGGGCTGATTAATCTTGATATATCATCTAACAA 1008
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GCTGCCTGACGTGTTTCAAAACCTTGTCGGGCTGATTAATCTTGATATATCATCTAACAA 994
Query 1009 TATAAGCGGCACATTGCCTCCTTCTATGGAGAATTTATTAACTCTTACAACATTACGTGT 1068
| |||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||
Sbjct 995 TCTAAGCGGCACATTGCCTCCTTCAATGGAGAACTTATCAACTCTTACAACATTACGTGT 1054
Query 1069 TCAGAACAATCAGCTCTCAGGAACTCTGGACGTTCTTCAAGGCCTTCCTCTTCAAGACTT 1128
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1055 TCAGAACAATCAGCTCTCAGGAACTCTGGACGTCCTTCAAGGCCTTCCTCTTCAAGACTT 1114
Query 1129 AAACATAGAGAATAACCTCTTCTCTGGACCCATACCGGACAAATTACTAAGCATTCCGAA 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AAACATAGAGAATAACCTCTTCTCTGGACCCATACCGGACAAATTACTAAGCATTCCGAA 1174
Query 1189 ATTCCTACATGAAGGAAACCCGTTCAATGCCACAATGATCAATTCCACCTCGACTGCACC 1248
||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1175 ATTCCTAAATGAAGGAAACCCGTTCAATGCCACCACAATCAATTCCACCTCGACTGCACC 1234
Query 1249 ATCATTGTCTCCGTCTCTATCTCCAACAAAACCAGCTCCAACGCGACCATTTTCTGGAGT 1308
||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1235 ATCGTTGTCTCCGTCTATGTCTCCAACAAAACCAGCTCCAACGCGACCGTTTTCTGGAGT 1294
Query 1309 TCCACCTCCTCCAAATGAGAGGAATCGAGGGAAAGTTGCTGATGGACCTTCTGATTCAGA 1368
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 TCCACCTCCTCCAACTGAGAGGAATCGAGGGAAAGTTGCTGATGGACCTTCTGATTCAGA 1354
Query 1369 AGGATCGAGCTCTGAGAATTCAAAGGGAAAGAACTCTTCACATACTAAAAAGATAATCCT 1428
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1355 AGGATCGAGTTCTGAGAATTCAAAGGGAAAGAACTCTTCACATACTAAAAGGATAATCCT 1414
Query 1429 TATTGCATTCGCTGGCGTCCTCGTCTTCATAATTCTGGTTTTGGCAATACTCTTGCTGTT 1488
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 TCTTGCATTCGCTGGCGTCCTCGTCTTCATAATTCTGGTTTTGGCAATACTCTTGCTGTT 1474
Query 1489 GCCAAAATGTGCAAGACGTAGAGAACATGCTAACAGAGTTTTCAAACCGCATCAAGTTGG 1548
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1475 GCCAAAATGTGCAAGACGAAGAGAACATGCTAACAGAGTCTTCAAACCGCATCAAGTTGG 1534
Query 1549 TGCTGATAGAGGAAGCAGAGAGAATGCTCTGGAAAACGGGACT-CCGGTACTGCCACCAC 1607
|||||||||||||||||||||||||||||||||||| ||| || || |||| ||||||||
Sbjct 1535 TGCTGATAGAGGAAGCAGAGAGAATGCTCTGGAAAATGGG-CTTCCAGTACCGCCACCAC 1593
Query 1608 CTGGTCGATCTGAAAAAGTTCAAAGAGAACCCTTCAAGAAAGCTGGAGAGGAACCAAAGG 1667
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1594 CTGCTCGATCTGAAAAAGTTCAAAGGGAACCCTTCAAGAAAGCTGGAGAGGAACCAAAGG 1653
Query 1668 TCTTACATGACCTTGAGAGGCTGCGGAGACCTGCACCTATATCAAGACAGGAAAGTCAAG 1727
| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1654 TTTTACATGACCTTGAGAGGTTGCGGAGACCTGCGCCTATATCAAGACAGGAAAGTCAAG 1713
Query 1728 ATATTGACTTTTCAATGTTGATGcctcctcctccaccacctccaccaccaccaccacctc 1787
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1714 ATATTGACTTTTCAATGTTGATGCCTCCTCCTCCGCCACCTCCTCCACCGCCACCACCTC 1773
Query 1788 ctcctTTGGATGAGAAGGTCACGGTTATGCCAATCATATCACCCGAAAGACCCGTTAAGA 1847
||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 1774 CTCCTTTGGCTGAGAAGGTCTCCGTTATGCCAATTATATCACCCGAAAGACCCGTTAAGA 1833
Query 1848 AAACTTCCCCTAAACGCTTACCCTTAACTTCTGTGAAGCACTATTCTATTGCTTCTCTTC 1907
|| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1834 AACCTTCCCCTAAACGCTTACCCTTAACTTCTGTGAAGCACTACTCTATTGCATCTCTTC 1893
Query 1908 AACAATACACGGAAAGCTTCGCTCAGGAAAATCTCATTGGCTCAGGCATGCTCGGTAGTG 1967
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1894 AACAATACACAGAAAGCTTCGCTCAGGAAAATCTCATTGGCTCAGGCATGCTCGGGAGTG 1953
Query 1968 TTTATAGGGCCCGGCTTCCCAATGGAAAGTTGTTTGCTGTCAAGAAGTTGGACAAGAGGG 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 TTTATAGGGCCCGGCTTCCCAATGGAAAGTTGTTTGCTGTCAAGAAGTTGGACAAGAGGG 2013
Query 2028 CTTCTGAACAACAACAGGATCACGAATTTATCGAACTAGTGAACAATATAGATATGATTC 2087
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2014 CTTCTGAACAACAACAGGATCACGAATTTATCGAACTAGTGAACAATATAGATAAGATTC 2073
Query 2088 GCCACTCCAATATCGTTGAACTTGTGGGTTACTGTGCTGAGCACGATCAAAGACTATTGG 2147
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2074 GCCACTCCAATATCGTTGAACTTGCGGGTTACTGTGCTGAGCACGATCAAAGACTATTGG 2133
Query 2148 TCTACGAATATTGCAGTAACGGTACGTTACAAGACGGGTTGCATTCAGACGATGAATTCA 2207
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2134 TCTACGAATATTGCAGTAACGGTACGTTACAAGACGGGTTGCATTCAGACGAAGAATTCA 2193
Query 2208 AGAAGAAACTTTCGTGGAATACCCGTGTCAGTATGGCACTTGGAGCTGCTAGAGCCCTTG 2267
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2194 AGAAGAAACTTTCGTGGAATACCCGTATCAGTATGGCACTTGGAGCTGCTAGAGCCCTTG 2253
Query 2268 AGTACTTGCATGAGGTGTGTGAACCACCTATCATACACAGAAACTTCAAATCAGCCAATG 2327
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2254 AGTACTTGCATGAGGTGTGTGAACCATCTATCATACACAGAAACTTCAAATCAGCCAATG 2313
Query 2328 TTCTACTCGACGATGACCTGAGTGTTCTTGTCTCAGATTGTGGTTTGGCCCCACTAATAT 2387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2314 TTCTACTCGACGATGACCTGAGTGTTCTTGTCTCAGATTGTGGTTTGGCCCCACTAATAT 2373
Query 2388 CATCAGGCTCTGTGAGTCAGTTATCAGGGCAATTGCTAGCCGCTTACGGATATGGAGCTC 2447
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2374 CATCAGGCTCTGTGAGTCAGTTATCAGGACAATTGCTAGCCGCTTACGGATATGGAGCTC 2433
Query 2448 CAGAGTTCGACTCTGGAATCTATACATGGCAGAGTGATGTATATAGTTTTGGTGTTGTTA 2507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2434 CAGAGTTCGACTCTGGAATCTATACATGGCAGAGTGATGTATATAGTTTTGGTGTTGTTA 2493
Query 2508 TGTTAGAACTATTGACGGGTAGAATGTCCTACGATAGGGACCGGAGTAGAGGAGAGCAGT 2567
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2494 TGTTAGAACTCTTGACGGGTAGAATGTCCTATGATAGGGACCGGAGTAGAGGAGAGCAGT 2553
Query 2568 TCTTGGTGAGGTGGGCAATCCCACAGCTTCATGATATCGATGCATT-GGGCAAAATGGTT 2626
|||||||||||||||||||||| |||||||| ||||| |||||||| ||| |||||||||
Sbjct 2554 TCTTGGTGAGGTGGGCAATCCCTCAGCTTCACGATATTGATGCATTAGGG-AAAATGGTT 2612
Query 2627 GATCCATCTCTTAATGGACAATACCCTGCAAAGTCATTGTCACACTTTGCTGATATAATA 2686
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2613 GATCCATCTCTCAATGGACAATACCCTGCAAAGTCGTTGTCACACTTTGCTGATATAATT 2672
Query 2687 TCCCGGTGTGTTCAGTCTGAACCAGAATTTAGACCACTGATGTCAGAAGTTGTTCAAGAT 2746
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 2673 TCCCGGTGTGTTCAGTCTGAACCAGAATTCAGACCATTGATGTCAGAAGTTGTTCAAGAT 2732
Query 2747 CTACTAGATATGATCAGAAGAGAGCGTCATGGTTCGGGTGATTCTACCGCGGACTAGTGA 2806
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2733 CTACTAGATATGATCAGAAGAGAGCGTCATGGTTCGGGTGATTCTACCGCAGACTAGTGA 2792
Query 2807 ATTGTAAAGAAGCAtttttttATCGGATCATCTCTGTGAATTCGTGGAAACAAGAGATGT 2866
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2793 ATTGTAAAGAAGCATTTTTT-ATCGGATCATCTCTGTGAATTCGTGGAAACAAGAGATGT 2851
Query 2867 TCAGTTCTCAGAAACAACAACAACAACATAGGGAACTAAACCAGACACATaaaaaaaaa 2925
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2852 TCAGTTCTCAGAAACAACAACA------TAGGGAACTAAACCAGACACATAAAAAAAAA 2904
Score = 351 bits (190), Expect = 1e-95
Identities = 255/284 (90%), Gaps = 14/284 (5%)
Strand=Plus/Plus
Query 2956 AAGGAGGCTTAAGCTGATTCTACAGCCTTGTGAAGTGG-CTC-AGGGGAAAGGATCAATG 3013
||||||||||||||||||||||||||| |||| || ||| | || ||||||||||||
Sbjct 2903 AAGGAGGCTTAAGCTGATTCTACAGCC--AAGAAGAGGACTCTAAGGAAAAGGATCAATG 2960
Query 3014 T-GCTTGCTTCCAATGGGCGATGATTCGATTGGTGCAGAGTTTCTTTTTGTGAATCTTGA 3072
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 TGGCTTGCTTCCAATGGGGGATGATTCGATTGGTGCAGAGTTTCTTTTTGTGAATCTTGA 3020
Query 3073 ATCATCTGTGTTAGTAATATGTATTGGTTGAAGACCTCTACTGTAAAATGGTGTGTT-AC 3131
||||||| | |||||||||| | ||||||||||||||| |||||||||||||||||| ||
Sbjct 3021 ATCATCTCTTTTAGTAATATTTGTTGGTTGAAGACCTCAACTGTAAAATGGTGTGTTTAC 3080
Query 3132 TCGATTCTTTGAACTTGTTTTATTAAAACTTTAAAAGCTCATAGAACTTGCTCTGTGTTG 3191
|||||||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 3081 TCGATTCTTTGAACTTGTTTTA------CTT-AAA-GCTCATAGAACTTGCTCTGTGTTA 3132
Query 3192 TATTCTTTTAGTATGTGTGTGACTAAGTGTATTTGTGCCTGTAA 3235
|||||||||||||||||||||||| |||||||||| |||||||
Sbjct 3133 TATTCTTTTAGTATGTGTGTGACTTTGTGTATTTGTACCTGTAA 3176
> Ahg932972 jgi|Araly1|932972|scaffold_400960.1
Length=835
Score = 174 bits (94), Expect = 3e-42
Identities = 113/122 (93%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 990 TTGATATATCATCTAACAATATAAGCGGCACA-TTGCCTCCTTCTATGGAGAATTTATTA 1048
|||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||| |
Sbjct 685 TTGATATATCATCTAACAATCTAAGCGGCACATTTG-CTCCTTCAATGGAGAATTTATCA 743
Query 1049 ACTCTTACAACATTACGTGTTCAGAACAATCAGCTCTCAGGAACTCTGGACGTTCTTCAA 1108
||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| ||
Sbjct 744 ACTCTTACAACATTACGTGTTCAGAACAACCAGCTCTCACGAAATCTGGACGTTCTTAAA 803
Query 1109 GG 1110
||
Sbjct 804 GG 805
Score = 91.6 bits (49), Expect = 3e-17
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 855 CAGCTAATCAGTTCACCGGAAGCATCCCGGAATCTCTAGGAACATTGAGTTTTCTGAATG 914
|||| |||||||||||||||||||||||||||||| |||||| ||| |||||||| ||||
Sbjct 622 CAGCCAATCAGTTCACCGGAAGCATCCCGGAATCTATAGGAATATTTAGTTTTCTAAATG 681
Query 915 ACAT 918
||||
Sbjct 682 ACAT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122659557779
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5