BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03410.2
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490222 jgi|Araly1|490222|fgenesh2_kg.6__3356__AT4G03410.2 2087 0.0
> Ahg490222 jgi|Araly1|490222|fgenesh2_kg.6__3356__AT4G03410.2
Length=1651
Score = 2087 bits (1130), Expect = 0.0
Identities = 1414/1545 (92%), Gaps = 43/1545 (3%)
Strand=Plus/Plus
Query 172 aaaaaaaaTCAGAAAAGAC-CCAAtttttttCTAATTTGATCACAACCTAATCCTATCAA 230
|||||||||||| |||| | ||||| |||||||||||| | || ||||||||||||||||
Sbjct 1 AAAAAAAATCAGGAAAG-CTCCAATATTTTTCTAATTTCACCATAACCTAATCCTATCAA 59
Query 231 CATCGTTAACCAAACAAAGCCAATACATTTACCA---AG--G-AT-A-T--A---CGTAT 277
|||||||||||||||||||||||||||| ||||| || | || | | | |||||
Sbjct 60 CATCGTTAACCAAACAAAGCCAATACATCTACCACGGAGATGTATCACTCAAGCTCGTAT 119
Query 278 GCATATTGCAAAGATCACCCGATTTTATGAATTTCAGAAAAAACCTTCCGCCTGATTCTC 337
||||||||| ||||||||||||||| ||||||||||||||||| | || || |
Sbjct 120 GCATATTGCGAAGATCACCCGATTTCATGAATTTCAGAAAAAA--AAAAG-CT--TT-TT 173
Query 338 TTGAATCGTTTTGATCAGACTGCCGTATCGGCGGAGACCACGATGGTGTAGTCCTTGAAC 397
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 174 TTGAATCGATTTGATCAGACTGCCGTATCGGCGGAGACCACGATGGTGTAGTCCTTCAAC 233
Query 398 ATGTCTAGATCTTAAACCAAAACGGTAGGACTCGAAGCAACTGGTCCTATGGTCTAGTGG 457
|| |||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 234 GTGCCTAGGTCTTAAACTAGAACGGCAGGACTCGAAGCAACTGGTCCTATGGTCTAGTGG 293
Query 458 TCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATCTCGGTAGGACCTTTGTTT 517
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||
Sbjct 294 TCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAGTCTCGGTAGAACCTTTTTTT 353
Query 518 TCGGCTTCGGTTTTGAGATTGTGCAAACC-GGTTTTTAACCAAATTAAAACCCACCGGTT 576
|||||||| ||| |||| ||||| || ||||||||||||||| | |||||| |||||
Sbjct 354 TCGGCTTCAGTTACGAGAATGTGCTTTCCTGGTTTTTAACCAAATCACAACCCATCGGTT 413
Query 577 ATTGGTTTTAATTTAACCGAAACTCGGTTCGGCTCAGTTCCTAC----CGTTTGGTCACC 632
|| || ||||| ||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 414 ATCGGGTTTAAACTAACCGAAAGTCGGTTCAGCTCAGTTCCTACTGTTTGTTTGGTCACC 473
Query 633 AAAGTCTGCTGCTTCTTTTTTGTTC-TCTAAGTCTAAAAACCTCTCCTTTGGCTGTGAGA 691
|||||||||| |||| | ||||||| || |||||||||||| || |||||||| ||||||
Sbjct 474 AAAGTCTGCTTCTTCCTCTTTGTTCTTCAAAGTCTAAAAACTTCACCTTTGGCGGTGAGA 533
Query 692 GAGCCAACGAGAAGAGAAAAAGTATCTTCCTTTGAGAAGTGC-AAGTCCATGGCAGCTCT 750
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 534 GAGCCAACGAGAAGAGAAAAAGTATCTTCCTTTGAGAAGTGCAAAGTCCATGGCAGCTCT 593
Query 751 CTGTTGTTGTCCCACCACCATCATCGTCTCCGGGAAGGTTTCTTCACGGATTAAAACCGC 810
| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 594 C---TGTTGTCCTACCACCATCATCGTCTCCGGGAAGCTTTCTTCACGGATTAAAACCGC 650
Query 811 AGGCCCATTACCCCGAATCAACCCTTTTAAGAATCAGAAACGATTGATTACAGAGAGAAG 870
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGGTCAATTACCCAGAATCAACCCTTTTAAGAATCAGAAACGATTGATTACAGAGAGAAG 710
Query 871 AAACTTGATCGTTAAATCGATCATTGAAGACAGAGAAGCAATCGATGTTAAAAATGACAA 930
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 711 GAACTTGATCGTGAAATCGATCATTGAAGACAGAGAAGCAATCGATTTTAAAAATGACAA 770
Query 931 TTTCAAGGCAGAGGAAGAACTATCAGAAGATAAAGTAGAAGATACAGATCGGCTGATGAG 990
||||||| ||||||||| | | | ||| ||||||||||||||||||||||||
Sbjct 771 TTTCAAGCCAGAGGAAG-A--A-C-------AAA-CAGAAGATACAGATCGGCTGATGAG 818
Query 991 TCGAGGTATCAACGCAGCTATAGTTCTCGCCGCCGGTACCGTTGCGGTTACTAAGCTTTT 1050
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 819 TCGAGGAATCAACGCAGCTATAGTTCTCGCCGCCGGTACCGTTGCGGTTACTAAGCTCTT 878
Query 1051 AACCATTGATCATGACTATTGGCAAGGTTGGACTCTCTACGAGATACTTAGGTATGCACC 1110
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 AACCATCGATCATGACTATTGGCAAGGTTGGACTCTCTACGAGATACTTAGGTATGCACC 938
Query 1111 TGAACATAATTGGTTTGCGTATGAACAAATTCTCAAAACAAACCCTGTTTTGGCGAAAAT 1170
|||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 939 TGAACACAATTGGGTTGCGTATGAACAAATTCTCAAAACAAACCCAGTTTTGGCGAAAAT 998
Query 1171 GGCGATTAGTGGAATTGTGTATTCTTTAGGAGATTGGATTGCACAATGTTACGAAGGAAA 1230
||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 999 GGCCATCAGTGGAATTGTGTATTCTTTAGGAGATTGGATTGCACAATGTTTTGAAGGAAA 1058
Query 1231 ACCGCTGTTTGAGTTTGATCGAACTCGTGTTCTTAGATCAGGTCTTGTTGGATTCACACT 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1059 ACCGCTGTTTGAGTTTGATCGAACTCGTGTTCTTAGATCAGGTCTTGTTGGATTCACCCT 1118
Query 1291 CCATGGTTCACTGTCTCACTATTACTACCAATTCTGTGAGGCTCTCTTTCCTTTTCAAGA 1350
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1119 CCATGGTTCACTCTCTCACTATTACTACCAATTCTGCGAGGCTCTCTTTCCTTTTCAAGA 1178
Query 1351 ATGGTGGGTAGTCCCTGCAAAAGTCGCATTTGATCAAACCGTATGGTCTGCAATTTGGAA 1410
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1179 ATGGTGGGTAGTTCCTGCAAAAGTCGCCTTTGATCAAACCGTATGGTCTGCAATTTGGAA 1238
Query 1411 CAGTATCTACTTTACAGTTTTAGGGCTCTTGCGTTTCCAATCTCCAGCTGACATTTTCAG 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 CAGTATCTACTTTACAGTTTTAGGGCTCTTGCGTTTCCAATCTCCAGCTGACATTTTCAG 1298
Query 1471 CGAAATCAAGACAACATTTTTGCCAATGCTCACTGCAGGCTGGAAACTCTGGCCATTGGC 1530
||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1299 CGAAATCCAGACGACATTTTGGCCAATGCTCACTGCAGGCTGGAAACTCTGGCCATTAGC 1358
Query 1531 ACACTTGGTTACATACGGTGTAATCCCTGTAGACCAAAGGCTTCTTTGGGTAGATTGTAT 1590
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 1359 TCACTTGGTTACATACGGTGTAATTCCTGTAGACCAAAGGCTTCTCTGGGTGGATTGCAT 1418
Query 1591 TGAACTCATATGGGTCACTATATTATCAACTTACTCGAACGAAAAAGCTGAGGCGCAAGC 1650
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1419 TGAACTCATATGGGTCACTATATTGTCGACTTACTCAAACGAAAAAGCTGAGGCGCAAGC 1478
Query 1651 ATCAGAGGAAACGAACTCCAGTTCTCACTCAAGCGAGGTTTGCCA 1695
||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 1479 ATCAGGGGAAACAAACTCCAGTTCTCACTCAGGCGAGGTTTGCCA 1523
Score = 132 bits (71), Expect = 1e-29
Identities = 83/89 (93%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1780 TTGTGCCTGCAAATACTTGACAGGATTAGGTGATATCAGCATGTAGATTCTAGATTCTAT 1839
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 1563 TTGTGCCTGCAAATACTTGACAGGATTAGGCGATATCAGCATGTAGATTCAAGATTCTGT 1622
Query 1840 AGACTCTAACAGGAGGTGGATGAAGAACA 1868
||||| || | ||||||||||||||||||
Sbjct 1623 AGACTGTAGCTGGAGGTGGATGAAGAACA 1651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70733584965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5