BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03415.1
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490221 jgi|Araly1|490221|fgenesh2_kg.6__3355__AT4G03415.1 2316 0.0
> Ahg490221 jgi|Araly1|490221|fgenesh2_kg.6__3355__AT4G03415.1
Length=1407
Score = 2316 bits (1254), Expect = 0.0
Identities = 1358/1409 (96%), Gaps = 4/1409 (0%)
Strand=Plus/Plus
Query 245 ATGGGGGGTTGTGTGTCGACTAGTAGTAAGAGTACGTGTAGCAGCTGGAGCAATGGAGAG 304
|||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 1 ATGGGGGGTTGTGTATCGACTAGTAGTAAGAGTACATGCAGCAGTTGGAGCAATGGAGAG 60
Query 305 AAGCCTGTGCGTCGACCATATCTCGGGATTGGTTGTTGTGTGAGCAAAAGGGCGAAGAGA 364
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCCTGTGCGTAGGCCATATCTCGGGATTGGTTGTTGTGTGAGCAAAAGGGCGAAGAGA 120
Query 365 ACGTTTTCAGACCACATTGTCTCGTTGCAGAACTTGACTTCTATACCAAATCGGATCACC 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ACGTTTTCAGACCACATTGTCTCGTTGCAGAGCTTGACTTCTATACCAAATCGGATCACC 180
Query 425 AGC-AGCAGCAAGAGCAGGAGCTCTTGCATTTTCACTCAACAAGGACGCAAGGGTATTAA 483
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 A-CTAGCAGCAAGAGCAGGAGCTCTTGTATTTTCACTCAACAAGGACGCAAGGGTATTAA 239
Query 484 TCAGGACGCCATGATTGTGTGGGAAGATTTTATGTCTGAAGATGTGACATTTTGTGGTGT 543
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 TCAGGACGCCATGATTGTGTGGGAAGATTTTATGTCTGAAGATGTGACCTTTTGTGGTGT 299
Query 544 ATTTGATGGTCATGGTCCTTATGGCCATCTTGTTGCTCGTAAAGTGAGAGATACATTGCC 603
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 ATTTGATGGTCATGGTCCTTATGGTCATCTTGTTGCTCGTAAAGTGAGAGATACATTGCC 359
Query 604 TGTGAAGTTACAGTTTTTCTTTCAGACGCTTCAGTCGAAGCAAAACTGTTCTAAAGGAAC 663
||||||||| |||| ||||||||| ||||||||||| ||||||||| |||| ||||||||
Sbjct 360 TGTGAAGTTGCAGTCTTTCTTTCATACGCTTCAGTCAAAGCAAAACGGTTCGAAAGGAAC 419
Query 664 TCGATTCAGAAGAAATTCAAGCAAATCAGCTGTCCAAGAAGCTGTTAAAGAAGGATCTGA 723
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 420 TCGATTCAGAAGAAATTCAAGCAAATCGGCTGTCCAAGAAGCCGTTAAAGAAGGATCTGA 479
Query 724 CGAGGATAAACTTAAAGGCTTATGGGGAGAAGCTTTCTTGAAATCTTTTAAAGCCATGGA 783
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGAGGATAAACTAAAAGGCTTGTGGGGAGAAGCTTTCTTGAAATCTTTTAAAGCCATGGA 539
Query 784 TAAGGAACTGCGGTCTCATCCTAATCTGGACTGTTTTTGTAGTGGCAGCACTGGCGTAAC 843
||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 540 TAAGGAACTACGATCTCATCCTAATCTGGACTGTTTCTGTAGTGGCAGTACTGGCGTAAC 599
Query 844 AATTCTTAAACAGGGGTCTAATCTCTTCATGGGAAACATCGGGGATTCTCGGGCCATCCT 903
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 AATTCTTAAACAGGGGTCTAATCTCTTCATGGGAAACATTGGGGATTCTCGGGCCATCCT 659
Query 904 TGGATCAAAAGACAGTAACGATTCTATGGTGGCAACTCAACTGACAGTTGATCTGAAGCC 963
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TGGATCAAAAGATAGTAACGATTCTATGGTGGCAACTCAACTAACAGTTGATCTGAAGCC 719
Query 964 GGATTTACCTAGGGAAGCTGAGAGGATCAAACGGTGTAAAGGTCGAGTATTTGCGA-TGG 1022
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 720 GGATTTACCGAGGGAAGCTGAGAGGATCAAACGGTGTAAAGGTCGAGTATTTGC-ATTGG 778
Query 1023 AAGACGAGCCAGAGGTGCCGCGAGTCTGGCTACCTTATGATGATGCACCTGGATTAGCCA 1082
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 779 AAGACGAGCCAGAGGTGCCGCGAGTTTGGTTACCTTATGATGATGCACCTGGATTGGCCA 838
Query 1083 TGGCCAGGGCGTTTGGTGACTTCTGTCTAAAAGAGTATGGAGTCATTTCAGTACCTGAGT 1142
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 TGGCTAGGGCGTTTGGTGACTTCTGTCTAAAAGATTATGGAGTCATTTCAGTACCTGAGT 898
Query 1143 TCACTCACCGTGTTCTTACAGACAGAGATCAATTCATTGTTCTTGCCTCTGACGGAGTAT 1202
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 899 TCACTCACCGTGTTCTTACAGACAAAGATCAATTCATTGTTCTTGCCTCGGACGGAGTAT 958
Query 1203 GGGATGTGTTAAGCAACGAAGAAGTGGTTGACATTGTAGCTTCAGCTACAAGCCGGGCAT 1262
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 959 GGGATGTGTTAAGCAATGAAGAAGTGGTTGACATTATAGCTTCAGCTACAAGCCGAGCAT 1018
Query 1263 CAGCGGCTAGGACCTTGGTGAACTCGGCTGCGCGTGAATGGAAACTGAAGTACCCGACTT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAGCGGCTAGGACCTTGGTGAACTCGGCTGCGCGTGAATGGAAACTGAAGTACCCGACTT 1078
Query 1323 CCAAAATGGATGATTGTGCAGTGGTATGTTTGTTTCTGGATGGGAAAATGGATTCTGAGT 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CCAAAATGGATGATTGTGCAGTGGTATGTTTGTTTCTGGATGGGAAAATGGATTCTGAGT 1138
Query 1383 CGGATTATGATGAACAAGGCTTCTCTTCAGCCACAAATGCTGTAGAATCAGATGATGGCC 1442
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1139 CGGATTATGATGAACAGGGCTTCTCTTCAGCAACAAATGCTGTAGAATCAGATGACGGCC 1198
Query 1443 AAAGATCAGAACCATGTCTCCAAAGAAACTTCACAGTTAGATCATCATCAGATCAAGAAA 1502
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1199 AAAGATCAGAACCATGTCTCCAAAGAAACTTCACAGTTAGATCATCCTCAGATCAAGAAA 1258
Query 1503 ACGAGACTTATGGTAACGTGAATACAGAGACTGATGCAGAGGATGAGAAAACGGTAGGAG 1562
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACGAGACTTACGGTAATGTGAATACAGAGACTGATGCAGAGGATGAGAAAACGGTAGGAG 1318
Query 1563 ATCAAAACTGGTTGGGTCTACAAGGCGTCACACGCGTGAACTCACTTGTCCAGCTTCCGA 1622
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATCAAAACTGGTTGGGTCTAGAAGGCGTCACACGCGTGAACTCACTTGTCCAGCTTCCGA 1378
Query 1623 GATTCTCTGAAGAGAAATCGAAGACTTGA 1651
|||||||||||||||| || |||||||||
Sbjct 1379 GATTCTCTGAAGAGAAGTCCAAGACTTGA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64981957970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5