BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03420.1
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943368 jgi|Araly1|943368|scaffold_603912.1 1580 0.0
Ahg470333 jgi|Araly1|470333|fgenesh2_kg.1__287__AT1G03610.1 837 0.0
> Ahg943368 jgi|Araly1|943368|scaffold_603912.1
Length=985
Score = 1580 bits (855), Expect = 0.0
Identities = 907/933 (97%), Gaps = 0/933 (0%)
Strand=Plus/Plus
Query 406 TCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTATCC 465
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 51 TCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTCCCC 110
Query 466 AAGGCGGAGATTAGGAGTTTGAATAGGATTTGGCATCCATGGGAGAGACAAAAGGTTGAG 525
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 111 AAGGCGGAGATTAGGAGTTTGAATCGGATTTGGCATCCATGGGAGAGAGAAAAGGTTGAG 170
Query 526 TTTTTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGT 585
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 171 TTTTTCAGATTGAGTGATCTATGGGATTGTTACGATGAATGGAGTGCTTATGGAGCTGGT 230
Query 586 GTTCCAATTCGTCTCTCTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCT 645
||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 231 GTTCCTATTCGTCTCACTAATGGAGAATCTCTTGTTCAATATTATGTTCCTTATCTCTCT 290
Query 646 GCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGAT 705
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 291 GCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTTAGGGATGACTCTGAAGAT 350
Query 706 GGGGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTT 765
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GGGGAAAGCAGAGATTCCTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTT 410
Query 766 TCGAGATGTGCTTCTGATGAAGGACTTGAACATGACGCTCTCTTGCATCCTAATGATCGG 825
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 411 TCGAGATGTGCTTCTGAGGAAGGACTTGAACATGACGCTCTCTTGCATCCGAATGATCGC 470
Query 826 TTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTC 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTC 530
Query 886 ATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCGTA 945
||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 531 ATGGATAAGATCAATGAATTGGCTCAAAGGTACCCTGGATTAATGTCGTTGAGAAGCGTA 590
Query 946 GATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAATG 1005
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 591 GATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCAATTTACCATATTCCAATG 650
Query 1006 GGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTTCT 1065
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 651 GGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTTAGTTATCACACTCTTTCATCTTCT 710
Query 1066 TTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGA 770
Query 1126 GAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTTGG 1185
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 771 GAAGGTGTAACTTTGCTTCCTTTTGGATTAGCCACTTACAAGATGCAAGGCAATGTTTGG 830
Query 1186 CTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTTCTTTCGCTTCTAAGTGTTGCG 1245
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 831 CTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTACTGTCGCTTCTAAGTGTTGCG 890
Query 1246 GATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATG 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATG 950
Query 1306 GCTCACCGTGGCTGAAACAAATCCGTTGCTATA 1338
||||||||||||| |||||||||||| ||||||
Sbjct 951 GCTCACCGTGGCTAAAACAAATCCGTCGCTATA 983
> Ahg470333 jgi|Araly1|470333|fgenesh2_kg.1__287__AT1G03610.1
Length=1605
Score = 837 bits (453), Expect = 0.0
Identities = 779/929 (84%), Gaps = 52/929 (6%)
Strand=Plus/Plus
Query 412 CTTGA-CAGATTCCTTCATTGCACAACA-CCTGTAGTGCCACCCCAATCTCTATCCAAGG 469
||||| | ||||||||||||||| |||| ||| ||||||||||||||||||| ||||||
Sbjct 392 CTTGATC-GATTCCTTCATTGCATAACACCCT-TAGTGCCACCCCAATCTCTCCCCAAGG 449
Query 470 CGGAGATTAGGAGTTTGAATAGGATT-TGGCATCCATGGGAGAGACAAAAGGTTGAGTTT 528
|||||||||| | | ||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 450 CGGAGATTAGAACCCTAAAT-CGATTGTGGCATCCATGGGAGAGAGAAAAGGTTGAGTTT 508
Query 529 TTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGTGTT 588
||||| ||||||||| | ||||||||||||||||||||||| |||||||||||| | ||
Sbjct 509 TTCAGGTTGAGTGATTTGTGGGATTGTTATGATGAATGGAGCGCTTATGGAGCTAGCGTC 568
Query 589 CCAATTCGTCTCT-CTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCTGC 647
|| |||| | | | | ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 569 CCTATTCATAT-TACCAATGGAGAATCTCTTGTTCAATACTATGTTCCTTATCTCTCTGC 627
Query 648 TATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGATGG 707
|| |||||||||||||||| ||| ||||||||||| |||||||| || |||||||||||
Sbjct 628 CATCCAGATTTTCACCTCTCATTCCTCCTTGATCCGATTAAGGGAAGAGTCTGAAGATGG 687
Query 708 GGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGA-TGAGAGTGAAAGTGATAAACTTT 766
|||| | ||| | ||| ||| | | ||| || | || || || ||| |
Sbjct 688 GGAATG-TGAG----G-GTAGAGATCCGTTTAGCGATTCAG-GT---AGCGAT-GA---- 732
Query 767 CGAGATGTGCTTCTGATGAAGGACTT--GAACATGACGCTCTCTTGCATCCTAATGATCG 824
||| ||| | ||||| ||||||||| ||||| || | ||||||||||| ||||||||
Sbjct 733 -GAG-TGT-C-TCTGAGGAAGGACTTGAGAACA--ACACGCTCTTGCATCCAAATGATCG 786
Query 825 GTTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTC-GAGTTCCTC 883
||||| ||||||||||| ||||||||||||||||||||||||||| | | |||||||||
Sbjct 787 TTTGGGTTATCTTTATCTCCAATACTTTGAGAGATCAGCTCCTTATAC-CAGAGTTCCTC 845
Query 884 TCATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCG 943
| ||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct 846 TGATGGATAAGATCAATGAATTGGCTCAAAGATACCCGGGATTGATGTCGTTGAGAAGCG 905
Query 944 TAGATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAA 1003
| |||||||| || |||||||||||| | |||||||||||||| ||||||||||| ||||
Sbjct 906 TTGATCTTTCTCCAGCAAGTTGGATGTCAGTAGCGTGGTACCCGATTTACCATATACCAA 965
Query 1004 TGGGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTT 1063
||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 966 TGGGAAGAACCATTAAAGACTTATCCACTTGTTTCCTCACTTATCACACTCTTTCCTCTT 1025
Query 1064 CTTTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAG 1123
|||||||||||||||| |||||||||||||| ||||| ||||||||| | |||| |||||
Sbjct 1026 CTTTCCAAGATATGGAACCAGAAGAAAATGGTGGGGACAAGGAGAGGGTGCGGAGGGAAG 1085
Query 1124 GAGAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTT 1183
| |||| | ||||| |||| || || ||| | || ||||| ||||||||||| ||||||
Sbjct 1086 GGGAAGATATAACTCTGCTCCCATTCGGGATGGCTACTTACAAGATGCAAGGTGATGTTT 1145
Query 1184 GGCTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTT--CTTTCGCTTCTA-AGTG 1240
|||| ||| | ||| | | | | ||||||||| || || ||| ||||| || ||||
Sbjct 1146 GGCTTTCGCAGGACCA-CGA--T---GATCAAGAGAGA-TTGGCTT-CGCTT-TATAGTG 1196
Query 1241 TTGCGGATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCT-CA 1299
| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||
Sbjct 1197 TCGCGGATTCTTGGCTAAAACAGCTTAGGGTCCAACATCATGACTTCAACTACTTCTGCA 1256
Query 1300 --A-G--AATGGCTCACCGTGGCTGAAAC 1323
| | |||| |||| ||||||| ||||
Sbjct 1257 GTATGTCAATGACTCATCGTGGCTAAAAC 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5