BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03430.1 Length=3430 Score E Sequences producing significant alignments: (Bits) Value Ahg490219 jgi|Araly1|490219|fgenesh2_kg.6__3353__AT4G03430.1 3129 0.0 Ahg943822 jgi|Araly1|943822|scaffold_700051.1 845 0.0 > Ahg490219 jgi|Araly1|490219|fgenesh2_kg.6__3353__AT4G03430.1 Length=3329 Score = 3129 bits (1694), Expect = 0.0 Identities = 1911/2012 (95%), Gaps = 29/2012 (1%) Strand=Plus/Plus Query 1419 GCTATGGTTGGAGGCTGCAAAGCTGGAGCATGATGTGGAGAACAAGAGTAGGGTGTTGAG 1478 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1341 GCTATGGTTGGAGGCTGCAAAGCTGGAGCATGATGAGGAGAACAAGAGTAGGGTGTTGAG 1400 Query 1479 AAAGGGACTGGAACATATTCCAGACTCTGTAAGACTATGGAAGGCTGTTGTTGAGTTGGC 1538 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1401 AAAGGGACTGGAACATATTCCAGACTCTGTAAGGCTATGGAAGGCTGTTGTTGAGTTGGC 1460 Query 1539 TAATGAGGAGGATGCAAGGATTTTGCTTCACAGGGCTGTGGAGTGCTGCCCTTTGCATCT 1598 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1461 TAATGAGGATGATGCAAGGATTTTGCTTCACAGGGCTGTGGAGTGCTGCCCTTTGCATCT 1520 Query 1599 GGAGCTATGGGTGGCACTTGCGAGGCTCGAAACATATGCTGAATCAAAGAAGGTGTTGAA 1658 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1521 GGAGCTATGGGTGGCACTTGCGAGGCTCGAAACATACGCTGAATCAAAGAAGGTGTTGAA 1580 Query 1659 CAAAGCGAGAGAGAAGCTCCCAAAGGAGCCTGCAATTTGGATCACCGCTGCTAAGTTAGA 1718 |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1581 TAAAGCGAGGGAGAAGCTCCCGAAGGAGCCTGCGATTTGGATCACCGCTGCTAAGTT--- 1637 Query 1719 AGAAGCTAATGGGAAGCTAGATGAAGCTAATGATAACACGGCTATGGTGGGAAAGATTAT 1778 || | |||||||| ||| | | |||||||||||||||||||||||||| Sbjct 1638 ---AG---A--GGAAGCTA-ATG--G-----G--AACACGGCTATGGTGGGAAAGATTAT 1679 Query 1779 TGATAGGGGTATAAAGACTCTCCAGAGAGAAGGGGTTGTTATTGACCGAGAAAATTGGAT 1838 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1680 TGATAGGGGTATAAAGACTCTGCAGAGAGAAGGGGTTGTTATTGACCGAGAAAATTGGAT 1739 Query 1839 GAGTGAGGCTGAGGCATGTGAGAGAGTTGGATCTGTCGCTACATGCCAGGCCATTATTAA 1898 || |||||||||||| | |||||||| ||| |||||||| ||||||||||| |||||||| Sbjct 1740 GAATGAGGCTGAGGCCTCTGAGAGAGCTGGGTCTGTCGCAACATGCCAGGCGATTATTAA 1799 Query 1899 GAACACAATAGGTATTGGAGTGGAAGAAGAGGATAGAAAGAGAACTTGGGTTGCTGATGC 1958 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1800 GAACACAATCGGTATTGGAGTCGAAGAAGAGGATAGAAAGAGAACTTGGGTTGCTGATGC 1859 Query 1959 AGATGAGTGCAAGAAGAGGGGTTCCATTGAGACCGCAAGAGCAATATACGCCCATGCTCT 2018 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1860 AGATGAGTGCAAGAAGAGGGGTTCCATTGAGACTGCAAGAGCAATATACGCCCATGCTCT 1919 Query 2019 TAGTGTATTCTTGACCAAGAAAAGTATCTGGCTTAAAGCGGCGCAGCTTGAGAAGAGCCA 2078 || |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1920 TACTGTATTCTTGACCAAGAAAAGTATCTGGCTTAAAGCTGCGCAGCTTGAAAAGAGCCA 1979 Query 2079 TGGGAGTCGGGAGTCCCTTGATGCCTTGTTGCGTAAGGCTGTAACATATGTCCCGCAAGC 2138 |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1980 CGGGAGTAGGGAGTCCCTTGATGCCTTGTTGCGTAAGGCGGTGACATATGTCCCGCAAGC 2039 Query 2139 TGAGGTTCTCTGGCTCATGGGTGCCAAAGAGAAGTGGCTCGCTGGAGATGTTCCAGCAGC 2198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2040 TGAGGTTCTCTGGCTCATGGGTGCCAAAGAGAAGTGGCTCGCTGGAGATGTTCCAGCAGC 2099 Query 2199 CCGTGCTATTCTACAAGAGGCTTATGCTGCAATTCCCAACTCTGAGGAAATCTGGCTTGC 2258 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2100 CCGTGCTATTTTACAAGAGGCTTATGCTGCAATTCCCAACTCTGAGGAAATCTGGCTTGC 2159 Query 2259 TGCTTTCAAGCTTGAGTTTGAGAACAAGGAGCCGGAGAGGGCAAGAATGCTGCTTGCAAA 2318 |||||||||||| |||||||| || |||||||| |||||||| ||||||||||||||||| Sbjct 2160 TGCTTTCAAGCTCGAGTTTGAAAATAAGGAGCCAGAGAGGGCGAGAATGCTGCTTGCAAA 2219 Query 2319 AGCAAGGGAAAGAGGAGGGACTGAAAGGGTCTGGATGAAATCAGCCATTGTTGAGAGAGA 2378 ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| Sbjct 2220 AGCAAGGGAAAGAGGAGGGACCGAGAGGGTCTGGATGAAATCCGCCATTGTTGAGAGAGA 2279 Query 2379 ACTTGGCAACGTAGAGGAGGAGAGGAGATTGCTTAATGAAGGTTTGAAGCAATTCCCAAC 2438 |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 2280 ACTTGGCAACGTAGAGGAGGAGAGGAGATTGCTTAATGAAGGCTTGAAGCAGTTTCCAAC 2339 Query 2439 ATTCTTCAAGCTTTGGTTAATGCTTGGGCAGCTCGAGGAACGGTTCAAGCATCTAGAACA 2498 |||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct 2340 ATTCTTCAAGCTTTGGTTGATGCTTGGGCAGCTCGAGGAACGGTTCAAGCATTTGGAACA 2399 Query 2499 GGCCAGGAAAGCTTATGACACTGGTTTGAAGCACTGTCCCCACTGCATACCACTGTGGCT 2558 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2400 GGCCAGGAAAGCTTATGACACTGGTTTGAAGCACTGTCCCCACTGCATACCGCTGTGGCT 2459 Query 2559 CTCACTCGCTGATCTTGAAGAGAAAGTGAATGGGCTAAACAAAGCTCGGGCTATTCTCAC 2618 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2460 CTCGCTCGCTGATCTTGAAGAGAAAGTGAATGGGCTGAACAAAGCTCGGGCTATTCTCAC 2519 Query 2619 CACGGCCAGGAAGAAGAATCCTgggggggCTGAGCTATGGTTAGCTGCTATTCGCGCTGA 2678 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 2520 CACGGCCAGGAAGAAGAATCCTGGGGGGGCTGAGCTATGGTTAGCTGCTATTCGTGCCGA 2579 Query 2679 ACTGAGGCATGACAACAAGAGAGAAGCAGAGCACTTGATGTCAAAGGCTCTGCAAGACTG 2738 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2580 ACTGAGGCATGACAACAAGAGAGAAGCAGAGCACTTGATGTCAAAGGCTCTGCAAGAGTG 2639 Query 2739 TCCCAAG-AGTGGTATCCTCTGGGCTGCGGACATTGAGATGGCGCCACGTCCTCGACGGA 2797 ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2640 TCCCA-GTAGTGGTATCCTCTGGGCTGCGGACATCGAGATGGCGCCACGTCCTCGACGGA 2698 Query 2798 AAACAAAGAGTATTGATGCTATGAAGAAGTGTGATCGCGACCCTCATGTCACCATAGCTG 2857 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2699 AAACAAAGAGTATGGATGCTATGAAGAAGTGTGATCGCGACCCTCATGTCACCGTAGCTG 2758 Query 2858 TTGCCAAGCTCTTTTGGCAAGACAAGAAGGTGGAGAAAGCCAGAGCATGGTTTGAACGTG 2917 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2759 TTGCCAAGCTCTTTTGGCAAGACAAGAAGGTGGAGAAAGCCAGATCATGGTTTGAACGTG 2818 Query 2918 CTGTTACCGTTGGCCCAGATATTGGCGATTTCTGGGCGTTGTTCTACAAATTTGAACTTC 2977 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2819 CTGTTACCCTTGGCCCAGATATTGGCGATTTCTGGGCGTTGTACTACAAATTTGAACTTC 2878 Query 2978 AACATGGCTCTGATGAGGACAGGAAGGAAGTTGTGGCGAAGTGTGTAGCTTGTGAGCCGA 3037 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 2879 AACATGGCTCTGATGAGAACAGGAAGGAAGTTGTGGCGAAGTGTGTAGCTAGTGAGCCGA 2938 Query 3038 AGCATGGCGAGAAATGGCAAGCCATCTCCAAAGCGGTTGAAAATGCTCACCAGCCTATTG 3097 ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2939 AGCATGGTGAGAAGTGGCAAGCCATCTCCAAAGCGGTTGAGAATGCTCACCAGCCTATTG 2998 Query 3098 AAGTTATCTTGAAGAGAGTTGTGAATGCGTTGAGCAAGGAAGAGAATTCTGCTTGAGAGT 3157 |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 2999 AAGTCATCTTGAAGAGAGTTGTGAGTGCGTTGAGCAAGGAAGAGAATGCTGCTTGAGAGT 3058 Query 3158 ATCAATTTTCTTATGTTTTTCATGATCAAGCTCTGCTCATAGCACATTACACCTT-AGTT 3216 | ||| || ||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 3059 AACAAATTCCTTATGTTTTTCATGATCAAGCTCTGCTCATAGCACATTACACTTTTAGTT 3118 Query 3217 CTTGTTTTCTCTTTGCAGGCTCAACTTTTAACCATTCATGTTTTTCTTCAGTAGCGAGAC 3276 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3119 CTTGTTTTCTCTTTGCAGGCTCAACTTTTAACCGTTCATGTTTTTCTTCAGTAGCGAGAG 3178 Query 3277 CTGATATTGATTTACAGGAGTGT-TT--C-ACCAGATACATGTAGAATTCTCAGTTTACT 3332 ||||||||||||| | ||||||| || | ||| |||||||||||||||||||||||||| Sbjct 3179 CTGATATTGATTTGCTGGAGTGTGTTTTCGACCTGATACATGTAGAATTCTCAGTTTACT 3238 Query 3333 AAATGCTTCAGTTTTCTTTGTGAGTCTCTGTGTGCTGCAGTGTTCAGCTATTAAACTTCT 3392 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3239 GAATGCTTCAGTTTTCTTTGTGAGTCTCTGTGTGCTGCAGTGTTCAGCTATTTAACTTCT 3298 Query 3393 TTTGTTATTTGTATAACTGATCATTTGTTGTT 3424 ||||||||| |||||||||||||||||||||| Sbjct 3299 TTTGTTATT-GTATAACTGATCATTTGTTGTT 3329 Score = 2073 bits (1122), Expect = 0.0 Identities = 1282/1357 (94%), Gaps = 20/1357 (1%) Strand=Plus/Plus Query 25 GTTTGGTTTCTTTGACCGGAGAATCTCGATTAGGTTACGATGGTGTTTCTCTCGATTCCA 84 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 GTTTTGTTTCTTTGACCGGAGAATCTCGATTAGGTTACGATGGTGTTTCTCTCGATCCCC 60 Query 85 AACGGGAAGACTTTATCGATCGACGTGAACCCTAATTCAACCACCATCTCCGCCTTCGAA 144 |||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 61 AACGGGAAGACTCTGTCGATCGACGTGAACCCTAAATCAACCACCGTCTCCGCCTTCGAA 120 Query 145 CAATTGGCCCACCAACGTAGTGATGTTCCACAA-TCTTTCCTTCGTTACTCTCTCCGTAT 203 ||||||| ||||||||| |||||||||||| || | |||||||||||||| |||||||| Sbjct 121 CAATTGGTCCACCAACGCAGTGATGTTCCA-AAGCCCTTCCTTCGTTACTCGCTCCGTAT 179 Query 204 GCGAAACCCTAGCCGCGTGTTTGTAGATTCAAAGGATTCCGATTCGATCTTATTGTCCGA 263 ||| |||||||| | | ||| | | | || ||||||||||||||| |||| ||||| Sbjct 180 GCGTAACCCTAG-C-CATGTAT-TCG--TC----GATTCCGATTCGATCCTATTATCCGA 230 Query 264 TCTCGGTGTTTCTCGTTTCTCTACTGTGATTATCCATGTCCTGCTTTTGGGTGGTATGCA 323 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 231 TCTCGGTGTTTCTCGTTTCTCTACTGTGATTATCCATGTCCCGCTTTTGGGTGGTATGCA 290 Query 324 A-G--CGGCTCCGCCGAAGCCTCGTCTTGATTTCCTCAATTCTAAGCCTCCGTCAAATTA 380 | | ||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 291 AGGAATGGCTCCGCCGAAGCCTCGTCTCGACTTCCTCAATTCTAAGCCTCCGTCAAATTA 350 Query 381 TGTAGCGGGTTTGGGTCGTGGTGCTACTGGGTTTACTACTCGATCTGATATTGGTCCTGC 440 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 351 TGTAGCGGGTCTGGGTCGTGGTGCTACTGGGTTTACTACTCGGTCAGATATTGGTCCTGC 410 Query 441 TCGTGCTGCTCCGGATCTTCCTGATCGGTCTGCTTTGGCTACAGCGGCTGCTCCAGGAGT 500 |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| Sbjct 411 TCGTGCTGCTCCGGATCTGCCTGATCGATCTGCTGCGGCTACAGCGGCTGCTCCAGGAGT 470 Query 501 AGGTCGTGGAGCAGGGAAGCCAAGTGAAGCGGAAGCGGAGGACGATGAAGAAGCTGAGGA 560 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 471 AGGTCGTGGAGCAGGGAAGCCAAGT------GAAGCGGAGGACGATGAAGAAGCTGAGGA 524 Query 561 GAAAAGGTACGATGAGAATCAGACGTTTGATGAGTTTGAAGGGAATGATGTTGGTTTGTT 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 GAAAAGGTACGATGAGAATCAGACGTTTGATGAGTTTGAAGGGAATGATGTTGGTTTGTT 584 Query 621 CGCTAATGCTGAGTACGATGAGGATGATAAAGAGGCTGATGCCATCTGGGAGTCTATTGA 680 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 585 CGCTAATGCTGAGTACGATGAGGATGACAAAGAGGCTGATGCCATCTGGGAGTCTATTGA 644 Query 681 TCAGAGGATGGATTCGAGGAGGAAAGATCGGAGAGAAGCGAAGCTGAAGGAAGAAATCGA 740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 TCAGAGGATGGATTCGAGGAGGAAAGATCGGAGAGAAGCGAAGCTGAAGGAAGAAATCGA 704 Query 741 GAAATACCGAGCCTCGAACCCTAAGATTACTGAGCAGTTTGCGGATTTGAAGAGGAAATT 800 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 705 GAAATACCGAGCCTCGAACCCTAAGATTACTGAGCAGTTTGCAGATTTGAAGAGGAAGTT 764 Query 801 ACACACTTTGTCTGCGGATGAGTGGGATAGTATTCCTGAGATTGGGGATTACTCGCTGAG 860 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | Sbjct 765 ACACACTTTGTCTGCGGATGAATGGGACAGTATTCCTGAGATTGGGGATTACTCGCTGCG 824 Query 861 GAACAAGAAGAAGAAGTTTGAGAGCTTTGTGCCTATTCCTGATACGCTTTTGGAGAAGGC 920 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 825 GAACAAGAAGAAGAAGTTTGAGAGCTTTGTACCTATTCCTGATACGCTTTTGGAGAAGGC 884 Query 921 GAAGAAAGAAAAGGAGCTTGTCATGGCCTTAGACCCAAAGAGCAGAGCCGCTGGTGGGTC 980 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 885 GAAGAAAGAAAAGGAGCTTGTCATGGCCTTAGACCCAAAGAGCAGAGCCGCTGGTGGCTC 944 Query 981 GGAGACACCATGGGGGCAGACGCCGGTGACAGACTTGACTGCTGTCGGTGAGGGAAGAGG 1040 |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 945 GGAGACACCATGGGGGCAGACGCCAGTGACAGACTTGACTGCCGTAGGTGAGGGAAGAGG 1004 Query 1041 TACGGTGTTGTCTCTGAAGCTTGATAACCTATCAGATTCAGTTTCGGGGCAAACTGTAGT 1100 ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| || Sbjct 1005 TACGGTGCTGTCTCTGAAGCTTGATAGGTTATCAGATTCAGTTTCTGGGCAAACTGTTGT 1064 Query 1101 GGATCCTAAAGGCTACTTAACTGACCTGAAGAGTATGAAAAGAACCACTGATGAAGAGAT 1160 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1065 GGACCCTAAAGGCTACTTAACTGACCTAAAGAGTATGAAAAGAACCACTGATGAAGAGAT 1124 Query 1161 ATACGATCGCAATAGAGCTAGATTGTTATACAAGAGTCTGACCCAGTCGAATCCAAAGAA 1220 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1125 ATACGATCGCAACAGAGCTAGATTGTTATACAAGAGTCTGACTCAGTCGAATCCAAAGAA 1184 Query 1221 TCCAAATGGCTGGATTGCTGCTGCTAGAGTGGAGGAGGTGGATGGGAAGATTAAAGCAGC 1280 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1185 TCCAAATGGCTGGATTGCTGCTGCTAGAGTGGAGGAAATGGATGGGAAGATTAAAGCTGC 1244 Query 1281 TAGGTTTCAGATTCAGAGGGGCTGCGAAGAGTGCCCGAAAAATGAGGATGTTTGGCTTGA 1340 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1245 TAGGCTTCAGATTCAGAGGGGCTGCGAAGAGTGCCCGAAAAATGAGGATGTTTGGCTTGA 1304 Query 1341 AGCTTGTAGGTTAGCTAATCCAGAAGATGCCAAGGGG 1377 ||||||||||||||| ||||||||||||||||||||| Sbjct 1305 AGCTTGTAGGTTAGCCAATCCAGAAGATGCCAAGGGG 1341 > Ahg943822 jgi|Araly1|943822|scaffold_700051.1 Length=2461 Score = 845 bits (457), Expect = 0.0 Identities = 839/1016 (83%), Gaps = 55/1016 (5%) Strand=Plus/Plus Query 732 AGAAATCGAGAAATACCGAGCCTCGAACCCT-AAGATTACTGAGCAGTTTGCGGATTTGA 790 ||| |||||||| ||| ||||||| |||||| ||| || |||||||||||| |||| ||| Sbjct 494 AGACATCGAGAATTACAGAGCCTCCAACCCTAAAG-TTTCTGAGCAGTTTGTGGATCTGA 552 Query 791 AGAGGAAA-TTACACACTTTGTCTGCGGATGAGTGGGATAGTATTCCTGAGATTGGGGAT 849 ||| |||| || || |||||||||| |||||| |||||||||||||| ||||||||| || Sbjct 553 AGA-GAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAAT 611 Query 850 TACTCGC-TGAGGAACAAGAAGAAGAAGTTTGAGAGCTTTGTGCCTATTCCTGATACGCT 908 ||||||| | ||| ||||||||||| ||||||||||||||||||| ||||||| ||||| Sbjct 612 TACTCGCAT-CGGAGCAAGAAGAAGAGGTTTGAGAGCTTTGTGCCTGTTCCTGACACGCT 670 Query 909 TTTGGAGAAGGCGAAGAAAGAAAAGGAGCTTGTCAT-GGCCTTAGACCCAAAGAGCAGAG 967 ||| | | | ||| |||| ||| | ||| | |||||||| |||||| ||||||| Sbjct 671 TTT---GCA-G-GAA-AAAG----GGA--TCGTC-TCGGCCTTAGGCCCAAATAGCAGAG 717 Query 968 CCGCTGGTGGGTCGGAGACACCATGGGGGCAGACGCCGGTGACAGACTTGACTGCTGTCG 1027 |||||||||| |||||||| |||| | || | |||||||||| | |||| Sbjct 718 CCGCTGGTGGATCGGAGACGCCAT----G--GA------T---AGACTTGACTTCAGTCG 762 Query 1028 GTGAGGGAAGAGGTACGGTGTTGTCTCTGAAGCTTGATAACCTATCAGATTCAGTTTCGG 1087 |||||||||||||| ||||||||||||||||||| | |||||||||| |||| | Sbjct 763 GTGAGGGAAGAGGTTTTCTGTTGTCTCTGAAGCTTGAGAGGTTATCAGATTCTCTTTCAG 822 Query 1088 GGCAAACTGTAGTGGATCCTAAAGGCTACTTAACTGACCTGAAGAGTATGAAAAGAACC- 1146 |||||||||| ||||||||||||||||||||||||||||| |||| || | || ||| Sbjct 823 GGCAAACTGTTGTGGATCCTAAAGGCTACTTAACTGACCTTAAGAATAAGGAACTCACCA 882 Query 1147 ACTGATGAAGAGA-TATACGATCGCAATAGAGCTAGATTGTTA-TACAAGAGTCTGACCC 1204 || |||| ||| | | | | || |||||||||||| ||| || |||||| | || | Sbjct 883 AC-GATGCAGACATTTTTC-ATATTAATAGAGCTAGACCCTTATTA-AAGAGTATTACAC 939 Query 1205 AGTCGAATCCAAAGAATCCAAATGGCTGGATTGCTGCTGCTAGAGTGGAGGAG-GTGGAT 1263 |||||||||| |||||||| |||||||||||||||||||| ||| | |||||| | || | Sbjct 940 AGTCGAATCCCAAGAATCCCAATGGCTGGATTGCTGCTGCGAGACTCGAGGAGAG-GGCT 998 Query 1264 GGGAAGATTAAAGCAGCTAGGTTTCAGATTCAGAGGGGCTGCGAA-GAGTGCCCGAAAA- 1321 || || || ||||| ||||| ||||||||||| ||| ||| || |||||||| |||| Sbjct 999 GGTAAAATAAAAGCCGCTAGAACTCAGATTCAGAAGGGATGC-AATGAGTGCCC-AAAAC 1056 Query 1322 ATGAGGATGTTTGGCTTGAAGCTTGTAGGTTAGCTA-ATCCAGAAGATGCCAAGGGGGTT 1380 |||||||||||||| |||| ||||||| | | || | | || || |||||||||| ||| Sbjct 1057 ATGAGGATGTTTGGGTTGAGGCTTGTATGCTGGCCACA-CCGGAGGATGCCAAGGCGGTG 1115 Query 1381 ATTGCGAA-GGGAGTTAAGCTGATACCCAATTCAGTGAAGCTATGGTTGGAGGCTGCAAA 1439 ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1116 ATTGC-AATGGGAGTTAAGCAAATACCCAATTCAGTGAAGCTATGGTTGGAGGCTGCAAA 1174 Query 1440 GCTGGAGCATGATGTGGAGAACAAGAGTAGGGTGTTGAGAAAGGGACTGGAACATATTCC 1499 |||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 1175 GCTGGAGCATGATGAGGATAACAAGAGTAGGGTGTTGAGAAAAGGACTGGAGCATATTCC 1234 Query 1500 AGACTCTGTAAGACTATGGAAGGCTGTTGTTGAGTTGGCTAATGAGGAGGATGCAA-GGA 1558 |||||| || || ||||||||| ||||| || |||||||| | || |||||| || Sbjct 1235 AGACTCGGTTAGGCTATGGAAGACTGTTAAGGACATGGCTAATAAAGAAGATGCAGTGG- 1293 Query 1559 TTTTGCTTCACAGGGCTGTGGAGTGCTGCCCTTTGCATCTGGAGCTATGGGTGGCACTTG 1618 ||||||||||||| |||||||| |||||||||||||||| ||||||||| |||| |||| Sbjct 1294 TTTTGCTTCACAGAGCTGTGGAATGCTGCCCTTTGCATCCAGAGCTATGGATGGCGCTTG 1353 Query 1619 CGAGGCTCGAAACATATGCTGA-ATCAAAGAAGGTGTTGAACAAAGCGAGAGAGAAGCTC 1677 ||||||| |||||||| | | | ||||||| |||||||||| |||||||||||||||| Sbjct 1354 CGAGGCTTGAAACATACGAAAACA-CAAAGAAAGTGTTGAACAGAGCGAGAGAGAAGCTC 1412 Query 1678 CCAAAGGAGCCTGCAATTTGGATCACCGCTGCTAAGTTAGAAGAAGCTAATGGGAA 1733 || ||||||| || ||||||||||||||||||||| |||| |||| ||||||||| Sbjct 1413 CCCAAGGAGCGTGGGATTTGGATCACCGCTGCTAAGCTAGAGGAAGATAATGGGAA 1468 Score = 375 bits (203), Expect = 8e-103 Identities = 278/315 (88%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 2068 GAGAAGAGCCATGGGAGTCGGGAGTCCCTTGATGCCTTGTTGCGTAAGGCTGTAACATAT 2127 |||||||| ||||| ||| |||||| ||||||||| |||||||||||||||| ||||| Sbjct 1668 GAGAAGAGTCATGGTAGTATGGAGTCTCTTGATGCCGTGTTGCGTAAGGCTGTGACATAC 1727 Query 2128 GTCCCGCAAGCTGAGGTTCTCTGGCTCATGGGTGCCAAAGAGAAGTGGCTCGCTGGAGAT 2187 |||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1728 CTCCCTCAGGCTGAGGTTCTCTGGCTCATGTGTGCCAAAGAGAAGTGGCTCGCTGGAGAT 1787 Query 2188 GTTCCAGCAGCCCGTG-CTATTCTACAAGAGGCTTATGCTGCAATTCCCAACTCTGAGGA 2246 |||||||||||||||| | ||||||||||||||| |||| ||| |||| ||||| ||||| Sbjct 1788 GTTCCAGCAGCCCGTGGC-ATTCTACAAGAGGCTCATGCCGCAGTTCCAAACTCCGAGGA 1846 Query 2247 AATCTGGCTTGCTGCTTTCAAGCTTGAGTTTGAGAACAAGGAGCCGGAGAGGGCAAGAAT 2306 |||||||||||||||||| ||||| |||||||||| || |||| ||||||||| || || Sbjct 1847 AATCTGGCTTGCTGCTTTTAAGCTAGAGTTTGAGAGCAGGGAGGTGGAGAGGGCGAGGAT 1906 Query 2307 GCTGCTTGCAAAAGCAAGGGAAAGAGGAGGGACTGAAAGGGTCTGGATGAAATCAGCCAT 2366 | | || ||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct 1907 GATTCTCGCAAAAGCAAGGGAAAGAGGAACTACTGGGAGGGTGTGGATGAAATCAGCCAT 1966 Query 2367 TGTTGAGAGAGAACT 2381 ||||||||| ||||| Sbjct 1967 TGTTGAGAGGGAACT 1981 Score = 156 bits (84), Expect = 1e-36 Identities = 130/153 (85%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 63 GATGGTGTTTCTCTCGATTCCAAACGGGAAGACTTTATCGATCGACGTGAACCCTAATTC 122 ||||||||| |||||||||||||||| |||||| | |||||| | |||||||||| | | Sbjct 23 GATGGTGTTCCTCTCGATTCCAAACGTGAAGACCATGTCGATCAATGTGAACCCTAGTGC 82 Query 123 AACCACCATCTCCGCCTTCGAACAATTGGCCCACCAACGTAGTGATGTTCCACAATCTTT 182 ||||||||||||||||||||||||||||| ||| ||||| | | || |||| ||| || | Sbjct 83 AACCACCATCTCCGCCTTCGAACAATTGGTCCATCAACGCACTCATCTTCCTCAACCTCT 142 Query 183 CCTTCGTTACTCTCTCCGTATGCGAAACCCTAG 215 |||||||||||| ||| || | || |||||||| Sbjct 143 CCTTCGTTACTCGCTCTGTCTCCGCAACCCTAG 175 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 129509920919 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5