BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03430.1
Length=3430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490219 jgi|Araly1|490219|fgenesh2_kg.6__3353__AT4G03430.1 3129 0.0
Ahg943822 jgi|Araly1|943822|scaffold_700051.1 845 0.0
> Ahg490219 jgi|Araly1|490219|fgenesh2_kg.6__3353__AT4G03430.1
Length=3329
Score = 3129 bits (1694), Expect = 0.0
Identities = 1911/2012 (95%), Gaps = 29/2012 (1%)
Strand=Plus/Plus
Query 1419 GCTATGGTTGGAGGCTGCAAAGCTGGAGCATGATGTGGAGAACAAGAGTAGGGTGTTGAG 1478
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1341 GCTATGGTTGGAGGCTGCAAAGCTGGAGCATGATGAGGAGAACAAGAGTAGGGTGTTGAG 1400
Query 1479 AAAGGGACTGGAACATATTCCAGACTCTGTAAGACTATGGAAGGCTGTTGTTGAGTTGGC 1538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1401 AAAGGGACTGGAACATATTCCAGACTCTGTAAGGCTATGGAAGGCTGTTGTTGAGTTGGC 1460
Query 1539 TAATGAGGAGGATGCAAGGATTTTGCTTCACAGGGCTGTGGAGTGCTGCCCTTTGCATCT 1598
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TAATGAGGATGATGCAAGGATTTTGCTTCACAGGGCTGTGGAGTGCTGCCCTTTGCATCT 1520
Query 1599 GGAGCTATGGGTGGCACTTGCGAGGCTCGAAACATATGCTGAATCAAAGAAGGTGTTGAA 1658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1521 GGAGCTATGGGTGGCACTTGCGAGGCTCGAAACATACGCTGAATCAAAGAAGGTGTTGAA 1580
Query 1659 CAAAGCGAGAGAGAAGCTCCCAAAGGAGCCTGCAATTTGGATCACCGCTGCTAAGTTAGA 1718
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1581 TAAAGCGAGGGAGAAGCTCCCGAAGGAGCCTGCGATTTGGATCACCGCTGCTAAGTT--- 1637
Query 1719 AGAAGCTAATGGGAAGCTAGATGAAGCTAATGATAACACGGCTATGGTGGGAAAGATTAT 1778
|| | |||||||| ||| | | ||||||||||||||||||||||||||
Sbjct 1638 ---AG---A--GGAAGCTA-ATG--G-----G--AACACGGCTATGGTGGGAAAGATTAT 1679
Query 1779 TGATAGGGGTATAAAGACTCTCCAGAGAGAAGGGGTTGTTATTGACCGAGAAAATTGGAT 1838
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGATAGGGGTATAAAGACTCTGCAGAGAGAAGGGGTTGTTATTGACCGAGAAAATTGGAT 1739
Query 1839 GAGTGAGGCTGAGGCATGTGAGAGAGTTGGATCTGTCGCTACATGCCAGGCCATTATTAA 1898
|| |||||||||||| | |||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 1740 GAATGAGGCTGAGGCCTCTGAGAGAGCTGGGTCTGTCGCAACATGCCAGGCGATTATTAA 1799
Query 1899 GAACACAATAGGTATTGGAGTGGAAGAAGAGGATAGAAAGAGAACTTGGGTTGCTGATGC 1958
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GAACACAATCGGTATTGGAGTCGAAGAAGAGGATAGAAAGAGAACTTGGGTTGCTGATGC 1859
Query 1959 AGATGAGTGCAAGAAGAGGGGTTCCATTGAGACCGCAAGAGCAATATACGCCCATGCTCT 2018
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1860 AGATGAGTGCAAGAAGAGGGGTTCCATTGAGACTGCAAGAGCAATATACGCCCATGCTCT 1919
Query 2019 TAGTGTATTCTTGACCAAGAAAAGTATCTGGCTTAAAGCGGCGCAGCTTGAGAAGAGCCA 2078
|| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1920 TACTGTATTCTTGACCAAGAAAAGTATCTGGCTTAAAGCTGCGCAGCTTGAAAAGAGCCA 1979
Query 2079 TGGGAGTCGGGAGTCCCTTGATGCCTTGTTGCGTAAGGCTGTAACATATGTCCCGCAAGC 2138
|||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1980 CGGGAGTAGGGAGTCCCTTGATGCCTTGTTGCGTAAGGCGGTGACATATGTCCCGCAAGC 2039
Query 2139 TGAGGTTCTCTGGCTCATGGGTGCCAAAGAGAAGTGGCTCGCTGGAGATGTTCCAGCAGC 2198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 TGAGGTTCTCTGGCTCATGGGTGCCAAAGAGAAGTGGCTCGCTGGAGATGTTCCAGCAGC 2099
Query 2199 CCGTGCTATTCTACAAGAGGCTTATGCTGCAATTCCCAACTCTGAGGAAATCTGGCTTGC 2258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 CCGTGCTATTTTACAAGAGGCTTATGCTGCAATTCCCAACTCTGAGGAAATCTGGCTTGC 2159
Query 2259 TGCTTTCAAGCTTGAGTTTGAGAACAAGGAGCCGGAGAGGGCAAGAATGCTGCTTGCAAA 2318
|||||||||||| |||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 2160 TGCTTTCAAGCTCGAGTTTGAAAATAAGGAGCCAGAGAGGGCGAGAATGCTGCTTGCAAA 2219
Query 2319 AGCAAGGGAAAGAGGAGGGACTGAAAGGGTCTGGATGAAATCAGCCATTGTTGAGAGAGA 2378
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 2220 AGCAAGGGAAAGAGGAGGGACCGAGAGGGTCTGGATGAAATCCGCCATTGTTGAGAGAGA 2279
Query 2379 ACTTGGCAACGTAGAGGAGGAGAGGAGATTGCTTAATGAAGGTTTGAAGCAATTCCCAAC 2438
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 2280 ACTTGGCAACGTAGAGGAGGAGAGGAGATTGCTTAATGAAGGCTTGAAGCAGTTTCCAAC 2339
Query 2439 ATTCTTCAAGCTTTGGTTAATGCTTGGGCAGCTCGAGGAACGGTTCAAGCATCTAGAACA 2498
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 2340 ATTCTTCAAGCTTTGGTTGATGCTTGGGCAGCTCGAGGAACGGTTCAAGCATTTGGAACA 2399
Query 2499 GGCCAGGAAAGCTTATGACACTGGTTTGAAGCACTGTCCCCACTGCATACCACTGTGGCT 2558
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2400 GGCCAGGAAAGCTTATGACACTGGTTTGAAGCACTGTCCCCACTGCATACCGCTGTGGCT 2459
Query 2559 CTCACTCGCTGATCTTGAAGAGAAAGTGAATGGGCTAAACAAAGCTCGGGCTATTCTCAC 2618
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2460 CTCGCTCGCTGATCTTGAAGAGAAAGTGAATGGGCTGAACAAAGCTCGGGCTATTCTCAC 2519
Query 2619 CACGGCCAGGAAGAAGAATCCTgggggggCTGAGCTATGGTTAGCTGCTATTCGCGCTGA 2678
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2520 CACGGCCAGGAAGAAGAATCCTGGGGGGGCTGAGCTATGGTTAGCTGCTATTCGTGCCGA 2579
Query 2679 ACTGAGGCATGACAACAAGAGAGAAGCAGAGCACTTGATGTCAAAGGCTCTGCAAGACTG 2738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2580 ACTGAGGCATGACAACAAGAGAGAAGCAGAGCACTTGATGTCAAAGGCTCTGCAAGAGTG 2639
Query 2739 TCCCAAG-AGTGGTATCCTCTGGGCTGCGGACATTGAGATGGCGCCACGTCCTCGACGGA 2797
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2640 TCCCA-GTAGTGGTATCCTCTGGGCTGCGGACATCGAGATGGCGCCACGTCCTCGACGGA 2698
Query 2798 AAACAAAGAGTATTGATGCTATGAAGAAGTGTGATCGCGACCCTCATGTCACCATAGCTG 2857
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2699 AAACAAAGAGTATGGATGCTATGAAGAAGTGTGATCGCGACCCTCATGTCACCGTAGCTG 2758
Query 2858 TTGCCAAGCTCTTTTGGCAAGACAAGAAGGTGGAGAAAGCCAGAGCATGGTTTGAACGTG 2917
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2759 TTGCCAAGCTCTTTTGGCAAGACAAGAAGGTGGAGAAAGCCAGATCATGGTTTGAACGTG 2818
Query 2918 CTGTTACCGTTGGCCCAGATATTGGCGATTTCTGGGCGTTGTTCTACAAATTTGAACTTC 2977
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2819 CTGTTACCCTTGGCCCAGATATTGGCGATTTCTGGGCGTTGTACTACAAATTTGAACTTC 2878
Query 2978 AACATGGCTCTGATGAGGACAGGAAGGAAGTTGTGGCGAAGTGTGTAGCTTGTGAGCCGA 3037
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2879 AACATGGCTCTGATGAGAACAGGAAGGAAGTTGTGGCGAAGTGTGTAGCTAGTGAGCCGA 2938
Query 3038 AGCATGGCGAGAAATGGCAAGCCATCTCCAAAGCGGTTGAAAATGCTCACCAGCCTATTG 3097
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2939 AGCATGGTGAGAAGTGGCAAGCCATCTCCAAAGCGGTTGAGAATGCTCACCAGCCTATTG 2998
Query 3098 AAGTTATCTTGAAGAGAGTTGTGAATGCGTTGAGCAAGGAAGAGAATTCTGCTTGAGAGT 3157
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2999 AAGTCATCTTGAAGAGAGTTGTGAGTGCGTTGAGCAAGGAAGAGAATGCTGCTTGAGAGT 3058
Query 3158 ATCAATTTTCTTATGTTTTTCATGATCAAGCTCTGCTCATAGCACATTACACCTT-AGTT 3216
| ||| || ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 3059 AACAAATTCCTTATGTTTTTCATGATCAAGCTCTGCTCATAGCACATTACACTTTTAGTT 3118
Query 3217 CTTGTTTTCTCTTTGCAGGCTCAACTTTTAACCATTCATGTTTTTCTTCAGTAGCGAGAC 3276
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3119 CTTGTTTTCTCTTTGCAGGCTCAACTTTTAACCGTTCATGTTTTTCTTCAGTAGCGAGAG 3178
Query 3277 CTGATATTGATTTACAGGAGTGT-TT--C-ACCAGATACATGTAGAATTCTCAGTTTACT 3332
||||||||||||| | ||||||| || | ||| ||||||||||||||||||||||||||
Sbjct 3179 CTGATATTGATTTGCTGGAGTGTGTTTTCGACCTGATACATGTAGAATTCTCAGTTTACT 3238
Query 3333 AAATGCTTCAGTTTTCTTTGTGAGTCTCTGTGTGCTGCAGTGTTCAGCTATTAAACTTCT 3392
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3239 GAATGCTTCAGTTTTCTTTGTGAGTCTCTGTGTGCTGCAGTGTTCAGCTATTTAACTTCT 3298
Query 3393 TTTGTTATTTGTATAACTGATCATTTGTTGTT 3424
||||||||| ||||||||||||||||||||||
Sbjct 3299 TTTGTTATT-GTATAACTGATCATTTGTTGTT 3329
Score = 2073 bits (1122), Expect = 0.0
Identities = 1282/1357 (94%), Gaps = 20/1357 (1%)
Strand=Plus/Plus
Query 25 GTTTGGTTTCTTTGACCGGAGAATCTCGATTAGGTTACGATGGTGTTTCTCTCGATTCCA 84
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GTTTTGTTTCTTTGACCGGAGAATCTCGATTAGGTTACGATGGTGTTTCTCTCGATCCCC 60
Query 85 AACGGGAAGACTTTATCGATCGACGTGAACCCTAATTCAACCACCATCTCCGCCTTCGAA 144
|||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 61 AACGGGAAGACTCTGTCGATCGACGTGAACCCTAAATCAACCACCGTCTCCGCCTTCGAA 120
Query 145 CAATTGGCCCACCAACGTAGTGATGTTCCACAA-TCTTTCCTTCGTTACTCTCTCCGTAT 203
||||||| ||||||||| |||||||||||| || | |||||||||||||| ||||||||
Sbjct 121 CAATTGGTCCACCAACGCAGTGATGTTCCA-AAGCCCTTCCTTCGTTACTCGCTCCGTAT 179
Query 204 GCGAAACCCTAGCCGCGTGTTTGTAGATTCAAAGGATTCCGATTCGATCTTATTGTCCGA 263
||| |||||||| | | ||| | | | || ||||||||||||||| |||| |||||
Sbjct 180 GCGTAACCCTAG-C-CATGTAT-TCG--TC----GATTCCGATTCGATCCTATTATCCGA 230
Query 264 TCTCGGTGTTTCTCGTTTCTCTACTGTGATTATCCATGTCCTGCTTTTGGGTGGTATGCA 323
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 231 TCTCGGTGTTTCTCGTTTCTCTACTGTGATTATCCATGTCCCGCTTTTGGGTGGTATGCA 290
Query 324 A-G--CGGCTCCGCCGAAGCCTCGTCTTGATTTCCTCAATTCTAAGCCTCCGTCAAATTA 380
| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 291 AGGAATGGCTCCGCCGAAGCCTCGTCTCGACTTCCTCAATTCTAAGCCTCCGTCAAATTA 350
Query 381 TGTAGCGGGTTTGGGTCGTGGTGCTACTGGGTTTACTACTCGATCTGATATTGGTCCTGC 440
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 351 TGTAGCGGGTCTGGGTCGTGGTGCTACTGGGTTTACTACTCGGTCAGATATTGGTCCTGC 410
Query 441 TCGTGCTGCTCCGGATCTTCCTGATCGGTCTGCTTTGGCTACAGCGGCTGCTCCAGGAGT 500
|||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 411 TCGTGCTGCTCCGGATCTGCCTGATCGATCTGCTGCGGCTACAGCGGCTGCTCCAGGAGT 470
Query 501 AGGTCGTGGAGCAGGGAAGCCAAGTGAAGCGGAAGCGGAGGACGATGAAGAAGCTGAGGA 560
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 AGGTCGTGGAGCAGGGAAGCCAAGT------GAAGCGGAGGACGATGAAGAAGCTGAGGA 524
Query 561 GAAAAGGTACGATGAGAATCAGACGTTTGATGAGTTTGAAGGGAATGATGTTGGTTTGTT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GAAAAGGTACGATGAGAATCAGACGTTTGATGAGTTTGAAGGGAATGATGTTGGTTTGTT 584
Query 621 CGCTAATGCTGAGTACGATGAGGATGATAAAGAGGCTGATGCCATCTGGGAGTCTATTGA 680
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 585 CGCTAATGCTGAGTACGATGAGGATGACAAAGAGGCTGATGCCATCTGGGAGTCTATTGA 644
Query 681 TCAGAGGATGGATTCGAGGAGGAAAGATCGGAGAGAAGCGAAGCTGAAGGAAGAAATCGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TCAGAGGATGGATTCGAGGAGGAAAGATCGGAGAGAAGCGAAGCTGAAGGAAGAAATCGA 704
Query 741 GAAATACCGAGCCTCGAACCCTAAGATTACTGAGCAGTTTGCGGATTTGAAGAGGAAATT 800
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 705 GAAATACCGAGCCTCGAACCCTAAGATTACTGAGCAGTTTGCAGATTTGAAGAGGAAGTT 764
Query 801 ACACACTTTGTCTGCGGATGAGTGGGATAGTATTCCTGAGATTGGGGATTACTCGCTGAG 860
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 765 ACACACTTTGTCTGCGGATGAATGGGACAGTATTCCTGAGATTGGGGATTACTCGCTGCG 824
Query 861 GAACAAGAAGAAGAAGTTTGAGAGCTTTGTGCCTATTCCTGATACGCTTTTGGAGAAGGC 920
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 825 GAACAAGAAGAAGAAGTTTGAGAGCTTTGTACCTATTCCTGATACGCTTTTGGAGAAGGC 884
Query 921 GAAGAAAGAAAAGGAGCTTGTCATGGCCTTAGACCCAAAGAGCAGAGCCGCTGGTGGGTC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 885 GAAGAAAGAAAAGGAGCTTGTCATGGCCTTAGACCCAAAGAGCAGAGCCGCTGGTGGCTC 944
Query 981 GGAGACACCATGGGGGCAGACGCCGGTGACAGACTTGACTGCTGTCGGTGAGGGAAGAGG 1040
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 945 GGAGACACCATGGGGGCAGACGCCAGTGACAGACTTGACTGCCGTAGGTGAGGGAAGAGG 1004
Query 1041 TACGGTGTTGTCTCTGAAGCTTGATAACCTATCAGATTCAGTTTCGGGGCAAACTGTAGT 1100
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 1005 TACGGTGCTGTCTCTGAAGCTTGATAGGTTATCAGATTCAGTTTCTGGGCAAACTGTTGT 1064
Query 1101 GGATCCTAAAGGCTACTTAACTGACCTGAAGAGTATGAAAAGAACCACTGATGAAGAGAT 1160
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1065 GGACCCTAAAGGCTACTTAACTGACCTAAAGAGTATGAAAAGAACCACTGATGAAGAGAT 1124
Query 1161 ATACGATCGCAATAGAGCTAGATTGTTATACAAGAGTCTGACCCAGTCGAATCCAAAGAA 1220
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1125 ATACGATCGCAACAGAGCTAGATTGTTATACAAGAGTCTGACTCAGTCGAATCCAAAGAA 1184
Query 1221 TCCAAATGGCTGGATTGCTGCTGCTAGAGTGGAGGAGGTGGATGGGAAGATTAAAGCAGC 1280
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1185 TCCAAATGGCTGGATTGCTGCTGCTAGAGTGGAGGAAATGGATGGGAAGATTAAAGCTGC 1244
Query 1281 TAGGTTTCAGATTCAGAGGGGCTGCGAAGAGTGCCCGAAAAATGAGGATGTTTGGCTTGA 1340
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TAGGCTTCAGATTCAGAGGGGCTGCGAAGAGTGCCCGAAAAATGAGGATGTTTGGCTTGA 1304
Query 1341 AGCTTGTAGGTTAGCTAATCCAGAAGATGCCAAGGGG 1377
||||||||||||||| |||||||||||||||||||||
Sbjct 1305 AGCTTGTAGGTTAGCCAATCCAGAAGATGCCAAGGGG 1341
> Ahg943822 jgi|Araly1|943822|scaffold_700051.1
Length=2461
Score = 845 bits (457), Expect = 0.0
Identities = 839/1016 (83%), Gaps = 55/1016 (5%)
Strand=Plus/Plus
Query 732 AGAAATCGAGAAATACCGAGCCTCGAACCCT-AAGATTACTGAGCAGTTTGCGGATTTGA 790
||| |||||||| ||| ||||||| |||||| ||| || |||||||||||| |||| |||
Sbjct 494 AGACATCGAGAATTACAGAGCCTCCAACCCTAAAG-TTTCTGAGCAGTTTGTGGATCTGA 552
Query 791 AGAGGAAA-TTACACACTTTGTCTGCGGATGAGTGGGATAGTATTCCTGAGATTGGGGAT 849
||| |||| || || |||||||||| |||||| |||||||||||||| ||||||||| ||
Sbjct 553 AGA-GAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAAT 611
Query 850 TACTCGC-TGAGGAACAAGAAGAAGAAGTTTGAGAGCTTTGTGCCTATTCCTGATACGCT 908
||||||| | ||| ||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 612 TACTCGCAT-CGGAGCAAGAAGAAGAGGTTTGAGAGCTTTGTGCCTGTTCCTGACACGCT 670
Query 909 TTTGGAGAAGGCGAAGAAAGAAAAGGAGCTTGTCAT-GGCCTTAGACCCAAAGAGCAGAG 967
||| | | | ||| |||| ||| | ||| | |||||||| |||||| |||||||
Sbjct 671 TTT---GCA-G-GAA-AAAG----GGA--TCGTC-TCGGCCTTAGGCCCAAATAGCAGAG 717
Query 968 CCGCTGGTGGGTCGGAGACACCATGGGGGCAGACGCCGGTGACAGACTTGACTGCTGTCG 1027
|||||||||| |||||||| |||| | || | |||||||||| | ||||
Sbjct 718 CCGCTGGTGGATCGGAGACGCCAT----G--GA------T---AGACTTGACTTCAGTCG 762
Query 1028 GTGAGGGAAGAGGTACGGTGTTGTCTCTGAAGCTTGATAACCTATCAGATTCAGTTTCGG 1087
|||||||||||||| ||||||||||||||||||| | |||||||||| |||| |
Sbjct 763 GTGAGGGAAGAGGTTTTCTGTTGTCTCTGAAGCTTGAGAGGTTATCAGATTCTCTTTCAG 822
Query 1088 GGCAAACTGTAGTGGATCCTAAAGGCTACTTAACTGACCTGAAGAGTATGAAAAGAACC- 1146
|||||||||| ||||||||||||||||||||||||||||| |||| || | || |||
Sbjct 823 GGCAAACTGTTGTGGATCCTAAAGGCTACTTAACTGACCTTAAGAATAAGGAACTCACCA 882
Query 1147 ACTGATGAAGAGA-TATACGATCGCAATAGAGCTAGATTGTTA-TACAAGAGTCTGACCC 1204
|| |||| ||| | | | | || |||||||||||| ||| || |||||| | || |
Sbjct 883 AC-GATGCAGACATTTTTC-ATATTAATAGAGCTAGACCCTTATTA-AAGAGTATTACAC 939
Query 1205 AGTCGAATCCAAAGAATCCAAATGGCTGGATTGCTGCTGCTAGAGTGGAGGAG-GTGGAT 1263
|||||||||| |||||||| |||||||||||||||||||| ||| | |||||| | || |
Sbjct 940 AGTCGAATCCCAAGAATCCCAATGGCTGGATTGCTGCTGCGAGACTCGAGGAGAG-GGCT 998
Query 1264 GGGAAGATTAAAGCAGCTAGGTTTCAGATTCAGAGGGGCTGCGAA-GAGTGCCCGAAAA- 1321
|| || || ||||| ||||| ||||||||||| ||| ||| || |||||||| ||||
Sbjct 999 GGTAAAATAAAAGCCGCTAGAACTCAGATTCAGAAGGGATGC-AATGAGTGCCC-AAAAC 1056
Query 1322 ATGAGGATGTTTGGCTTGAAGCTTGTAGGTTAGCTA-ATCCAGAAGATGCCAAGGGGGTT 1380
|||||||||||||| |||| ||||||| | | || | | || || |||||||||| |||
Sbjct 1057 ATGAGGATGTTTGGGTTGAGGCTTGTATGCTGGCCACA-CCGGAGGATGCCAAGGCGGTG 1115
Query 1381 ATTGCGAA-GGGAGTTAAGCTGATACCCAATTCAGTGAAGCTATGGTTGGAGGCTGCAAA 1439
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1116 ATTGC-AATGGGAGTTAAGCAAATACCCAATTCAGTGAAGCTATGGTTGGAGGCTGCAAA 1174
Query 1440 GCTGGAGCATGATGTGGAGAACAAGAGTAGGGTGTTGAGAAAGGGACTGGAACATATTCC 1499
|||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1175 GCTGGAGCATGATGAGGATAACAAGAGTAGGGTGTTGAGAAAAGGACTGGAGCATATTCC 1234
Query 1500 AGACTCTGTAAGACTATGGAAGGCTGTTGTTGAGTTGGCTAATGAGGAGGATGCAA-GGA 1558
|||||| || || ||||||||| ||||| || |||||||| | || |||||| ||
Sbjct 1235 AGACTCGGTTAGGCTATGGAAGACTGTTAAGGACATGGCTAATAAAGAAGATGCAGTGG- 1293
Query 1559 TTTTGCTTCACAGGGCTGTGGAGTGCTGCCCTTTGCATCTGGAGCTATGGGTGGCACTTG 1618
||||||||||||| |||||||| |||||||||||||||| ||||||||| |||| ||||
Sbjct 1294 TTTTGCTTCACAGAGCTGTGGAATGCTGCCCTTTGCATCCAGAGCTATGGATGGCGCTTG 1353
Query 1619 CGAGGCTCGAAACATATGCTGA-ATCAAAGAAGGTGTTGAACAAAGCGAGAGAGAAGCTC 1677
||||||| |||||||| | | | ||||||| |||||||||| ||||||||||||||||
Sbjct 1354 CGAGGCTTGAAACATACGAAAACA-CAAAGAAAGTGTTGAACAGAGCGAGAGAGAAGCTC 1412
Query 1678 CCAAAGGAGCCTGCAATTTGGATCACCGCTGCTAAGTTAGAAGAAGCTAATGGGAA 1733
|| ||||||| || ||||||||||||||||||||| |||| |||| |||||||||
Sbjct 1413 CCCAAGGAGCGTGGGATTTGGATCACCGCTGCTAAGCTAGAGGAAGATAATGGGAA 1468
Score = 375 bits (203), Expect = 8e-103
Identities = 278/315 (88%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 2068 GAGAAGAGCCATGGGAGTCGGGAGTCCCTTGATGCCTTGTTGCGTAAGGCTGTAACATAT 2127
|||||||| ||||| ||| |||||| ||||||||| |||||||||||||||| |||||
Sbjct 1668 GAGAAGAGTCATGGTAGTATGGAGTCTCTTGATGCCGTGTTGCGTAAGGCTGTGACATAC 1727
Query 2128 GTCCCGCAAGCTGAGGTTCTCTGGCTCATGGGTGCCAAAGAGAAGTGGCTCGCTGGAGAT 2187
|||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1728 CTCCCTCAGGCTGAGGTTCTCTGGCTCATGTGTGCCAAAGAGAAGTGGCTCGCTGGAGAT 1787
Query 2188 GTTCCAGCAGCCCGTG-CTATTCTACAAGAGGCTTATGCTGCAATTCCCAACTCTGAGGA 2246
|||||||||||||||| | ||||||||||||||| |||| ||| |||| ||||| |||||
Sbjct 1788 GTTCCAGCAGCCCGTGGC-ATTCTACAAGAGGCTCATGCCGCAGTTCCAAACTCCGAGGA 1846
Query 2247 AATCTGGCTTGCTGCTTTCAAGCTTGAGTTTGAGAACAAGGAGCCGGAGAGGGCAAGAAT 2306
|||||||||||||||||| ||||| |||||||||| || |||| ||||||||| || ||
Sbjct 1847 AATCTGGCTTGCTGCTTTTAAGCTAGAGTTTGAGAGCAGGGAGGTGGAGAGGGCGAGGAT 1906
Query 2307 GCTGCTTGCAAAAGCAAGGGAAAGAGGAGGGACTGAAAGGGTCTGGATGAAATCAGCCAT 2366
| | || ||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 1907 GATTCTCGCAAAAGCAAGGGAAAGAGGAACTACTGGGAGGGTGTGGATGAAATCAGCCAT 1966
Query 2367 TGTTGAGAGAGAACT 2381
||||||||| |||||
Sbjct 1967 TGTTGAGAGGGAACT 1981
Score = 156 bits (84), Expect = 1e-36
Identities = 130/153 (85%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 63 GATGGTGTTTCTCTCGATTCCAAACGGGAAGACTTTATCGATCGACGTGAACCCTAATTC 122
||||||||| |||||||||||||||| |||||| | |||||| | |||||||||| | |
Sbjct 23 GATGGTGTTCCTCTCGATTCCAAACGTGAAGACCATGTCGATCAATGTGAACCCTAGTGC 82
Query 123 AACCACCATCTCCGCCTTCGAACAATTGGCCCACCAACGTAGTGATGTTCCACAATCTTT 182
||||||||||||||||||||||||||||| ||| ||||| | | || |||| ||| || |
Sbjct 83 AACCACCATCTCCGCCTTCGAACAATTGGTCCATCAACGCACTCATCTTCCTCAACCTCT 142
Query 183 CCTTCGTTACTCTCTCCGTATGCGAAACCCTAG 215
|||||||||||| ||| || | || ||||||||
Sbjct 143 CCTTCGTTACTCGCTCTGTCTCCGCAACCCTAG 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129509920919
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5