BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03490.2
Length=2272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943358 jgi|Araly1|943358|scaffold_603902.1 270 3e-71
> Ahg943358 jgi|Araly1|943358|scaffold_603902.1
Length=559
Score = 270 bits (146), Expect = 3e-71
Identities = 265/318 (83%), Gaps = 25/318 (8%)
Strand=Plus/Minus
Query 1704 AAGAACTGGAAGTGCGATGTTGAAGGCTTTTGAGTTGAGAGAAAGATACTATTGTCATGA 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 357 AAGAACTGGAAGTGCGATGTTGAAGGCTTTTGAGTTGAGAGAAAGATACTATTGTTATGA 298
Query 1764 TAGAGGAATACATCGCCAATATGTCACATACAAGAAAGAATTGGAAAGC--TCAT-TGA- 1819
||||||| ||||| |||||| |||||||||||||||||| | ||||| | | | | |
Sbjct 297 TAGAGGAGTACATGGCCAATGTGTCACATACAAGAAAGACTCGGAAATCTGTTTTCTTAG 238
Query 1820 TCAAA---GCCA-T-CCAAG-T---CA-ATCGCTGTATACAAGGTAATATTGGGGTCACC 1869
|||| |||| | ||||| | | | || | | || | || || |||||||
Sbjct 237 CCAAAGTGGCCATTCCCAAGTTGGGAACAGAGCCAT-TGGAATCT-ATTTTCAGGTCACC 180
Query 1870 TCTATGATGGTCCCAAGAAAACATACTCACAACTTTAGGGTGCCAG--TTTT-G-GTGGC 1925
|| | ||||||||||| |||||||||||||||||||||||||||| |||| | |||||
Sbjct 179 TC--T-ATGGTCCCAAGTAAACATACTCACAACTTTAGGGTGCCAGTTTTTTGGTGTGGC 123
Query 1926 TAGACAGCAAAATAATAGCGGCTTGACAGCTCTGGATATCGCCGAACTAAATCCCAACCC 1985
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 122 TAGACAGCAAAATAATAGCGGCTTGAGAGCTCTGGATATCGCCGAACAAAATCCCAAACC 63
Query 1986 CACTACATCTTTTGAGAG 2003
|| || |||||||||||
Sbjct 62 CA--ACGTCTTTTGAGAG 47
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85550690270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5