BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03510.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943356 jgi|Araly1|943356|scaffold_603900.1 1146 0.0
> Ahg943356 jgi|Araly1|943356|scaffold_603900.1
Length=782
Score = 1146 bits (620), Expect = 0.0
Identities = 734/787 (93%), Gaps = 16/787 (2%)
Strand=Plus/Plus
Query 176 GGATTTTGACCACTGATGGCCTTAGATCAATCTTTTGAAGATGCTGCTTTACTTGGAGAA 235
|||||||||||| |||||||||||||||||| ||||||| ||| || | | | |
Sbjct 10 GGATTTTGACCA---ATGGCCTTAGATCAATCTCTTGAAGA---TGC-TT-C-T---GTA 57
Query 236 CTCTATGGAGAAGGTGCATTTTGTTTCAAGAGCAAGAAACCTGAACCCAT-TACAGTCTC 294
|| ||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 58 CTTTATGGAGAAGGTGCATTTTGTTTCAAGAGCAAGAAACCTGAACCCATCT-CTGTCTC 116
Query 295 GGTTCCTTCTGATGA-TACTGATGATTCGAATTTTGACTGCAATATTTGCTTAGACTCGG 353
|||| |||||||||| | |||||||||||||| ||||||||||||||| ||||||| |
Sbjct 117 GGTTTCTTCTGATGACGGC-GATGATTCGAATTTCGACTGCAATATTTGCCTAGACTCAG 175
Query 354 TGCAAGAACCTGTTGTGACTCTCTGTGGTCACCTCTTTTGCTGGCCTTGTATTCACAAAT 413
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 176 TGCAAGAACCCGTTGTGACTCTCTGTGGTCACCTCTTCTGCTGGCCTTGTATTCACAAAT 235
Query 414 GGCTTGATGTACAGAGCTTCTCAACAAGTGATGAATACCAAAGACATAGACAGTGTCCTG 473
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 236 GGCTTGATGTACAGAGTTTTTCAACAAGTGATGAATACCAAAGACATAGACAGTGTCCCG 295
Query 474 TTTGTAAATCTAAAGTTTCTCATTCTACTTTGGTTCCTTTGTATGGTAGAGGCCGTTGTA 533
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 296 TTTGTAAATCTAAAGTGTCTCATTCTACATTGGTTCCTTTGTATGGCAGAGGCCGTTGTA 355
Query 534 CTACTCAGGAGGAAGGTAAAAACAGTGTGCCTAAAAGACCCGTAGGACCGGTTTATCGGC 593
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 356 CTACTCAGGAAGAAGGTAAAAACAGTGTGCCTAAAAGACCTGTAGGACCGGTTTACCGGT 415
Query 594 TTGAAATGCCGAATTCACCTTATGCAAGTACTGATCTGCGGTTATCACAACGGGTTCATT 653
||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 416 TTGAAATGCCGAATTCACCTTATTCCAGTACGGATCTGCGGTTATCACAACGGGTTCATT 475
Query 654 TCAATAGCCCACAGGAAGGTTACTACCCTGTCTCAGGGGTGATGAGCTCGAACAGTTTAT 713
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 476 TCAATAGCCCACAGGAAGGTTACTACCCTGTCTCAGGGGTGATGAGTTCAAACAGTTTAT 535
Query 714 CATACTCTGCTGTTTTGGATCCGGTGATGGTGATGGTTGGAGAAATGGTAGCTACGAGGT 773
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 536 CATACTCTGCTGTTTTGGATCCTGTGATGGTGATGGTTGGAGAAATGGTAGCTACGAGAT 595
Query 774 TGTTTGGAACACGAGTGATGGATAGATTTGCGTATCCGGACACTTACAATCTCGCAGGGA 833
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 596 TGTTTGGAACACGAGTGATGGATAGGTTTGCATATCCGGACACTTACAATCTCGCAGGGA 655
Query 834 CTAGCGGGCCGAGGATGAGAAGGCGGATAATGCAGGCAGATAAATCGCTGGGAAGAAtct 893
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAAGCGGGCCGAGGATGAGATGGCGGATAATGCAGGCAGATAAATCGCTGGGAAGAATCT 715
Query 894 tcttcttctttatgtgttgtgttgttctgtgtcttctcttgttTTAGGTTTTCATAGCTA 953
|||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 716 TCTTCTTCTTCATGTGTTGTGTTGTTCTGTGTCTTCTTTTGTTTTAAGTTCTCATAGCTA 775
Query 954 GCTTGGT 960
|||||||
Sbjct 776 GCTTGGT 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5