BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03520.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1 1116 0.0
> Ahg490216 jgi|Araly1|490216|fgenesh2_kg.6__3350__AT4G03520.1
Length=851
Score = 1116 bits (604), Expect = 0.0
Identities = 795/880 (90%), Gaps = 41/880 (5%)
Strand=Plus/Plus
Query 45 tagtttcgttatctttttattttctctatctatctggatattattttttcACTTGGGGAT 104
||||||||||||||||||| || || ||||||||||||||| |||| |||||||||||
Sbjct 1 TAGTTTCGTTATCTTTTTA-ATT-TC--TCTATCTGGATATTA-TTTTACACTTGGGGAT 55
Query 105 TTGGAGAAAC-CTCTCCTCTCTCTATCTAT--AGCCATGGCTGCTTTCACTTGTACCTCT 161
| |||||| | ||||| || |||||||||| ||||||||||||||||||||||||||||
Sbjct 56 TAGGAGAATCTCTCTCGTC-CTCTATCTATAGAGCCATGGCTGCTTTCACTTGTACCTCT 114
Query 162 CGTCCTCCGATTTCTCTCCGCTCCGAGACCAGAATCGTATCCTCATCACCATCGGCTTCT 221
|||||||||||||||||||| || ||||||| ||||| |||| | ||||||||||||||
Sbjct 115 CGTCCTCCGATTTCTCTCCGTTCTGAGACCAAAATCGCATCC--A-CACCATCGGCTTCT 171
Query 222 TCTCTCTCTTCTCGGCGGATGTTCGCCGTCTTACCGGAATCATCAGGTTTGAGAATCCGT 281
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 172 TCTCTCTCTTCTCGGCGGATGTTCGCCGTGTTACCGGAATCATCAGGTTTGAGAATCCGT 231
Query 282 CTTTCTCTCTCTCCGGCTTCGTTGACCTCGATTCATCA--A-CCTAGGGTTTCTCGATTA 338
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 232 CTTTCTCTTTCTCCGGCTTCGTTGACCTCGATTCATCATCATCCTAGGGTTTCTCGATTG 291
Query 339 CGAAGAGCCGTCGTCTGTGAAGCTCAGGAAACTACTACCGATATTCAAGTGGTCAATGAC 398
|||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 292 CGAAGAGCTGTCGTCTGTGAAGCCCAGGAAACTACTACCGATATTCCAGTGGTCAATGAC 351
Query 399 TCGACATGGGACTCTCTAGTTCTTAAAGCA-ACTGGGCCTGTAGTTG-TCGACTTTTGGG 456
|| ||||||||||||||||||||||| ||| | |||||||||| ||| ||||||||||||
Sbjct 352 TCAACATGGGACTCTCTAGTTCTTAAGGCAGA-TGGGCCTGTA-TTGGTCGACTTTTGGG 409
Query 457 CACCATGGTGTGGACCTTGCAAGATGATTGATCCGCTTGTAAACGATCTAGCACAGCATT 516
||||||||||||||||||||||||||||||| || || || || ||||||||||| || |
Sbjct 410 CACCATGGTGTGGACCTTGCAAGATGATTGACCCTCTCGTGAATGATCTAGCACAACAAT 469
Query 517 ACACTGGGAAGATCAAGTTCTACAAATTAAACACTGATGAATCTCCTA-ATACTCCCG-G 574
|||| ||||||||||||||||||||| ||||||| |||||||||||| | || ||| |
Sbjct 470 ACACCGGGAAGATCAAGTTCTACAAACTAAACACCGATGAATCTCCTTCA-AC-CCCAAG 527
Query 575 CCAGTACGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCGGTGGCGAGAAGAAGGA 634
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 528 CCAGTATGGAGTTAGAAGCATCCCAACGATCATGATCTTTGTCAATGGCGAGAAGAAGGA 587
Query 635 TACAATCATAGGTGCAGTGCCCAAAACCACACTCACATCTAGCCTCGACAAGTTCTTGCC 694
||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 588 TACAATCATAGGTGCAGTGCCAAAAACCACACTCACATCTAGCATTGACAAGTTCTTGCA 647
Query 695 ATGAAATATCACTTGTGGAGTCTGTAAGATCTCGTATC-TCTCTGTCTCTCGTTCTTGTT 753
||||||| ||||| ||| ||||||||||||||| |||| | ||| ||||||| |||||||
Sbjct 648 ATGAAATTTCACT-GTG-AGTCTGTAAGATCTC-TATCAT-TCTATCTCTCGCTCTTGTT 703
Query 754 CTCATTATCTCTGTAACTCAT-TATCACTGAACATCTAGACCTGGATAAATAATATGATG 812
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 704 CTCATTATCTCTGTAACTCAGCTATCACTGAACATCTAGACCTGGATAAATAATATGATG 763
Query 813 TCATGTCTTATGTCATTTTTACTGGTTTGAAGATGTTTTGAGATGCGGAACTAAAGGTAT 872
||||||||| | | ||||||||||||||||||||||||||||||||| ||
Sbjct 764 TCATGTCTT----C-T-------GGTTTGAAGATGTTTTGAGATGCGGAACTAAAGAAAT 811
Query 873 CAAAGAACAATCTTGGACTAGACTAATGGAACCACATTAA 912
|||||| |||||||||||||||||||||||||| ||||||
Sbjct 812 CAAAGATCAATCTTGGACTAGACTAATGGAACCGCATTAA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5