BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03540.1

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327471 jgi|Araly1|327471|fgenesh1_pm.C_scaffold_6002691           787    0.0  


> Ahg327471 jgi|Araly1|327471|fgenesh1_pm.C_scaffold_6002691
Length=495

 Score =  787 bits (426),  Expect = 0.0
 Identities = 472/495 (95%), Gaps = 0/495 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAAGTTGACAAAGAGAATAGGAGGGCTTGTGCTGCGATTGGCAGCGTTTGGTGCG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGAAGTTGACAAAGAGAATAGGAGGGCTTGTGCTGCGATTGGCAGCGTTTGGTGCG  60

Query  61   GCTCTTGCCGCATTGATCGTTATGATCACTAGCCGCGAGAGAGCTTCCTTCTTAGCCATC  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||  ||
Sbjct  61   GCTCTTGCCGCCTTGATCGTTATGATCACTAGCCGCGAGAGAGCTTCCTTCTTCGCTGTC  120

Query  121  TCCCTTGAAGCTAAGTACACCGATATGGCAGCGTTTAAGTATTTTGTAATAGCAAACGCT  180
            || ||||||||||||||||| |||||||| ||||||||||||||||| || ||||| |||
Sbjct  121  TCTCTTGAAGCTAAGTACACGGATATGGCCGCGTTTAAGTATTTTGTGATCGCAAATGCT  180

Query  181  GTTGTGAGTGTTTACAGCTTTCTAGTTCTGTTTCTTCCAAAGGAGAGTTTGCTTTGGAAA  240
            || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTCGTGAGTGTTTATAGCTTTCTAGTTCTGTTTCTTCCAAAGGAGAGTTTGCTTTGGAAA  240

Query  241  TTCGTCGTCGTCTTGGATTTGGTGATGACAATGCTGCTTACGTCAAGCTTATCGGCGGCT  300
            ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||
Sbjct  241  TTCGTCGTCGTCTTGGATTTGGTAATGACCATGCTACTGACGTCAAGCTTATCGGCGGCT  300

Query  301  CTAGCGGTGGCACAAGTGGGAAAGAAGGGAAACGCAAACGCAGGTTGGCTTCCGATTTGC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  301  CTAGCGGTGGCACAAGTGGGAAAGAAGGGAAACGCAAACGCAGGTTGGCTTCCTATTTGC  360

Query  361  GGGCAAGTTCCAAAGTTTTGCGATCAGATCACTGGAGCTTTAATTGCCGGTTTCGTTGCA  420
            || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GGTCAAGTTCCAAAATTTTGCGATCAGATCACTGGAGCTTTAATTGCCGGTTTCGTTGCA  420

Query  421  CTCGTCCTCTATGTACTCTTACTCTTATATTCTCTCCACGCCGTCGTCGACCCTTTTCTC  480
            ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct  421  CTCGTCCTCTACGTACTCTTACTCTTATATTCTCTCCACTCCGTCGTTGACCCTTTTCTC  480

Query  481  CTTCAAAAATCTTGA  495
            ||||| |||||||||
Sbjct  481  CTTCAGAAATCTTGA  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17971282419


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5