BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03560.1
Length=2674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943350 jgi|Araly1|943350|scaffold_603894.1 3598 0.0
> Ahg943350 jgi|Araly1|943350|scaffold_603894.1
Length=2239
Score = 3598 bits (1948), Expect = 0.0
Identities = 2144/2240 (96%), Gaps = 7/2240 (0%)
Strand=Plus/Plus
Query 180 CGGAGAGAGaaaaaaaaaaTGGAAGACCCGTTGATTGGTAGAGATAGTCTTGGTGGTGGT 239
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4 CGGAGA-AAAAAAAAAAAATGGAAGACCCGTTGATTGGTAGAGATAGTC---GTGGTGGT 59
Query 240 GGTACGGATCGGGTTCGTCGATCAGAAGCTATCACGCATGGTACTCCGTTTCAGAAAGCA 299
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGTGCGGATCGGGTTCGTCGATCAGAAGCTATCACGCATGGTACTCCGTTTCAGAAAGCT 119
Query 300 GCTGCACTCGTTGATCTGGCTGAAGATGGTATTGGTCTTCCTGTGGAAATACTTGATCAG 359
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 120 GCTGCACTCGTTGATCTGGCTGAAGATGGTATTGGTCTTCCTGAGCAAATACTTGATCAG 179
Query 360 TCGAGTTTCGGGGAGTCTGCTAGGTATTACTTCATCTTCACACG-TTTGGATCTGATCTG 418
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 180 TCGAGTTTCGGGGAGTCTGCTAAGTATTACTTCATCTTCACACGCTTT-GATCTGATCTG 238
Query 419 GTCACTCAACTATTTCGCTCTGCTTTTCCTTAACTTCTTCGAGCAACCATTGTGGTGTGa 478
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 239 GTCACTCAACTATTTCGCTCTGCTTTTCCTTAACTTTTTTGAGCAACCACTGTGGTGTGA 298
Query 479 aaaaaaCCCTAAACCGTCTTGCAAAGATAGAGATTACTATTACCTGGGAGAGTTACCGTA 538
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 AAAAAACCCTACACCGTCTTGCAAAGACAGAGATTACTATTACCTGGGAGAGTTACCGTA 358
Query 539 CTTGACCAATGCAGAATCCATTATCTATGAGGTGATTACCCTGGCTATACTCCTTGTACA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTGACCAATGCAGAATCCATTATCTATGAGGTGATTACCCTGGCTATACTCCTTGTACA 418
Query 599 TACTTTCTTCCCGATATCCTATGAAGGTTCCCGAATCTTTTGGACTAGTCGCCTGAATCT 658
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 419 TACTTTCTTCCCAATATCCTATGAAGGGTCCCGAATCTTTTGGACAAGTCGCCTGAATCT 478
Query 659 AGTGAAGGTTGCTTGCGTGGTAATTTTGTTTGTTGATGTGCTGGTTGACTTTCTGTATCT 718
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 479 AGTGAAGGTTGCTTGCGTGGTGATTTTGTTTGTTGATGTGCTGCTTGACTTTCTATATCT 538
Query 719 GTCTCCACTGGCTTTCGACTTTCTCCCTTTTAGAATCGCCCCATACGTGAGAGTTATCAT 778
|||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 GTCTCCACTGGCTTACGATTTTCTTCCTTTTAGAATCGCCCCATACGTGAGAGTTATCAT 598
Query 779 ATTCATCCTCAGCATAAGGGAACTTCGGGACACCCTTGTCCTTCTGTCTGGAATGCTTGG 838
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 ATTCATCCTCAGCATAAGGGAACTTCGAGACACCCTTGTCCTTCTGTCTGGAATGCTTGT 658
Query 839 CACATACTTGAATATCTTGGCTCTATGGATGCTGTTCCTTCTATTTGCCAGTTGGATTGC 898
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 CACATACTTGAATATAGTGGCTCTATGGATGTTGTTCCTTCTATTTGCCAGTTGGATTGC 718
Query 899 TTTTGTTATGTTTGAGGACACGCAGCAGGGCCTCACGGTCTTCACTTCATATGGTGCAAC 958
|||||||||||||||||| || ||||||||||||||| |||||||||| || |||| |||
Sbjct 719 TTTTGTTATGTTTGAGGATACACAGCAGGGCCTCACGATCTTCACTTCTTACGGTGTAAC 778
Query 959 TCTTTACCAGATGTTTATTTTGTTCACAACATCCAACAATCCTGATGTCTGGATTCCTGC 1018
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTTTATCAGATGTTTATTCTGTTCACAACATCCAACAATCCTGATGTCTGGATTCCTGC 838
Query 1019 ATACAAGTCTTCTCGCTGGTCTTCGGTGTTCTTCGTGCTCTACGTGCTAATTGGCGTCTA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 ATACAAGTCTTCTCGCTGGTCTTCGGTGTTCTTCGTGCTCTACGTGCTAATTGGGGTCTA 898
Query 1079 CTTTGTCACAAACTTGATTCTTGCCGTTGTTTATGACAGTTTCAAAGAACAGCTCGCAAA 1138
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTTTGTCACGAACTTGATTCTTGCCGTTGTTTATGACAGTTTCAAAGAACAGCTCGCAAA 958
Query 1139 GCAAGTATCTGGAATGGATCAAATGAAGAGAAGAATGTTGGAGAAAGCCTTTGGTCTTAT 1198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 GCAAGTATCTGGAATGGATCAAATGAAGAGAAGAATGCTGGAGAAAGCCTTTGGTCTTAT 1018
Query 1199 AGACTCAGACAAAAACGGGGAGATTGATAAGAACCAATGCATTAAGCTCTTTGAACAGTT 1258
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGACTCAGACAAAAATGGGGAGATTGATAAGAACCAATGCATTAAGCTCTTTGAACAGTT 1078
Query 1259 GACTAATTACAGGACGTTGCCGAAGATATCAAAAGAAGAATTCGGATTGATATTTGATGA 1318
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GACTAATTACAGGACTTTGCCGAAGATATCAAAAGAAGAATTCGGATTGATATTTGATGA 1138
Query 1319 GCTTGACGATACTCGTGACTTTAAGATAAACAAGGATGAGTTTGCTGACCTCTGCCAGGC 1378
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GCTTGACGACACTCGTGACTTTAAGATAAACAAGGATGAGTTTGCTGACCTCTGCCAGGC 1198
Query 1379 CATTGCTTTAAGATTCCAAAAGGAGGAAGTACCGTCTCTCTTTGAACATTTTCCGCAAAT 1438
||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1199 CATTGCTCTAAGATTCCAAAAGGAGGAAGTACCATCTCTCTTTGAAAATTTTCCGCAAAT 1258
Query 1439 TTACCATTCCGCCTTATCACAACAACTGAGAGCCTTTGTTCGAAGCCCCAACTTTGGCTA 1498
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTACCATTCGGCCTTATCACAACAACTGAGAGCCTTTGTTCGAAGCCCCAACTTTGGCTA 1318
Query 1499 CGCTATTTCTTTCATCCTCATTATCAATTTCATTGCTGTCGTTGTTGAAACAACGCTTGA 1558
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 1319 CGCTATTTCTTTCATCCTCGTTCTCAATTTCATTGCTGTCGTTGTAGAAACAACGCTTGA 1378
Query 1559 TATCGAAGAAAGCTCGGCTCAGAAGCCATGGCAGGTTGCCGAGTTTGTCTTTGGTTGGAT 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TATCGAAGAAAGCTCGGCTCAGAAGCCATGGCAGGTTGCCGAGTTTGTCTTTGGTTGGAT 1438
Query 1619 ATATGTGTTGGAGATGGCTCTGAAGATCTATACATATGGATTTGAGAATTATTGGAGAGA 1678
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1439 ATATGTCTTGGAGATGGCTCTGAAGATCTATTCATATGGATTTGAGAATTATTGGAGGGA 1498
Query 1679 GGGTGCTAACCGATTTGATTTTCTAGTCACATGGGTCATAGTTATTGGGGAAACAGCTAC 1738
|||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1499 GGGTTCAAACCGATTTGACTTTCTAGTCACATGGGTCATAGTTATTGGGGAAACGGCTAC 1558
Query 1739 CTTCATAACTCCAGACGAGAATACTTTCTTCTCAAATGGAGAATGGATCCGGTACCTTCT 1798
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1559 CTTCATAACTCCAGACGAGAACACTTTCTTCTCAAACGGAGAATGGATCCGGTACCTTCT 1618
Query 1799 CCTGGCGAGAATGTTAAGACTGATAAGGCTTCTTATGAACGTCCAGCGATACCGAGCATT 1858
||| || |||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1619 CCTTGCAAGAATGTTGAGACTGATAAGGCTTCTTCTGCACGTCCAGCGATACCGAGCATT 1678
Query 1859 TATTGCGACGTTCATAACTCTTATTCCAAGTTTGATGCCATATTTAGGGACCATTTTCTG 1918
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TATTGCAACGTTCATAACTCTTATTCCAAGTTTGATGCCATATTTAGGGACCATTTTCTG 1738
Query 1919 CGTGCTGTGTATCTACTGCTCTATTGGCGTACAGGTCTTTGGAGGGCTTGTGAATGCTGG 1978
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1739 CGTGCTGTGTATCTACTGCTCTATTGGCGTACAGGTCTTTGGTGGGCTTGTGAATGCTGG 1798
Query 1979 GAACAAAAAGCTCTTTGAAACCGAATTGGCTGAGGATGACTACCTTTTGTTCAACTTCAA 2038
||| || ||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1799 GAATAAGCAGCTCTTCAAAACCGAATTGGCTGAGGATGACTATCTATTGTTCAACTTCAA 1858
Query 2039 TGACTACCCCAATGGAATGGTCACACTCTTCAATCTGCTAGTTATGGGTAACTGGCAAGT 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TGACTACCCCAATGGAATGGTCACACTCTTCAATCTGCTAGTTATGGGTAACTGGCAAGT 1918
Query 2099 ATGGATGGAGAGCTACAAAGATTTGACGGGCACGTGGTGGAGCATTACATATTTCGTCAG 2158
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 1919 ATGGATGGAGAGCTACAAAGATTTGACGGGGACATGGTGGAGCATTACGTATTTCGTCAG 1978
Query 2159 TTTCTATGTCATCACTATTTTACTTCTGTTGAATTTGGTTGTTGCCTTTGTCTTGGAGGC 2218
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1979 TTTCTACGTCATCACTATTTTACTTCTGTTGAATTTGGTTGTTGCTTTTGTCTTGGAGGC 2038
Query 2219 GTTCTTTACTGAGCTGGATCTTGAAGAAGAAGAAAAATGTCAAGGACAGGATTCTCAAGA 2278
||||||| ||||||||||||| || ||||||||||| |||||||| |||||||||||||
Sbjct 2039 GTTCTTTGCTGAGCTGGATCTCGAGGAAGAAGAAAATTGTCAAGGGGAGGATTCTCAAGA 2098
Query 2279 AAAAAGAAACAGGCGTCGATCTGCAGGGTCGAAGTCTCGGAGTCAGAGAGTTGATACACT 2338
|| ||||||| | ||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 2099 AAGAAGAAACCGACGTCGATCTGCAGGGACAAAGTCTAGGAGTCAGAGAGTTGATACACT 2158
Query 2339 TCTTCATCACATGTTGGGTGATGAACTCAGCAAACCAGAGTGTTCCACTTCTGACACATA 2398
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2159 TCTTCATCACATGTTGGGTGATGAACTCAGCAAACCAGAGTGCTCCACTTCTGACACATA 2218
Query 2399 AAACAAAACAAGATCGTTAA 2418
||| |||| | |||||||||
Sbjct 2219 AAAGAAAA-AGGATCGTTAA 2237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100862968760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5