BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03565.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490205 jgi|Araly1|490205|fgenesh2_kg.6__3339__AT4G03565.1 837 0.0
Ahg943349 jgi|Araly1|943349|scaffold_603893.1 479 1e-134
Ahg943348 jgi|Araly1|943348|scaffold_603892.1 459 2e-128
> Ahg490205 jgi|Araly1|490205|fgenesh2_kg.6__3339__AT4G03565.1
Length=786
Score = 837 bits (453), Expect = 0.0
Identities = 528/565 (93%), Gaps = 2/565 (0%)
Strand=Plus/Plus
Query 229 GATACGGAAAGAGAGGGAGAAGACAATGGAGATAGTATAGTGGACGATGGATATTCAACA 288
|||| |||||| || ||||| ||| ||| |||||| ||||||||||| ||| ||||||||
Sbjct 223 GATAAGGAAAGCGACGGAGAGGACGATGTAGATAGCATAGTGGACGACGGAGATTCAACA 282
Query 289 AACGATCAACCAGAGTGGGAAGTGGATAACTTCGATGATTTATATAGCGATTTCTGTTCA 348
| |||||||||||| |||| ||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 283 AGCGATCAACCAGAATGGGGAGTGGATGACTTCGATGATATATATAGCGATTTCTATTCA 342
Query 349 CCTGATGAAGACTGTTATACCGACGAAGAAGATGAGCGTAAAAGACGTCTTTATCGTCGA 408
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 343 CCTGATGAAGACTGTTATACCGACGAAGAAGATGAGCGTAAAAAACGTCTTTATCGTCGA 402
Query 409 AATCTCCACTTTAGTCGTGGTTTTCTGGTGGAAAAAGGGATTCATCCACGTTCCGTATGG 468
|||||||||||||| | ||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 403 AATCTCCACTTTAGCCATGGTTTTCTGGTGGAAAAAGGAATTCGTCCACGTTCAGTATGG 462
Query 469 ATTGGTGCAATCTTACTTGAACCAT-TGGACAGTGAACATTCTCCGGTTAAAGGAAGGAC 527
| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 463 AGTGGCGCAATCTTACTTGAACC-TCTGGACAGTGAACATTCTCCGGTTAAAGGAAGGAC 521
Query 528 ACAACTTCAATACGCACAAGACATGGTCAAATTGTGTCTTCGCAAATACAATGCCTTAAA 587
||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 522 ACAGCTTCAATATGCACAAGACATGGCCAAATTGTGTCTTTGCAAATACAATGCCTTAAA 581
Query 588 GGAAACCAATGTGACATTGGATCATGTTGTAAGAGTGACAGGGTCTTTCACTGGTAGGTG 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 582 CGAAACCAATGTGACATTGGATCATGTTGTAAGAGTGACAGGGTCTTTCACTGGTAGTTG 641
Query 648 GGTTTCGTATATTACTTTTATGGCGAAAGAGTCTGAGGACGATGATACGCTTGTGGAGTA 707
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 642 GGTTTCGTATATCACTTTCATGGCGAAAGAGTCTGAGGATGATGATACGCTTGTGGAGTA 701
Query 708 TCAAGCCAAGGTTGTGAAGAAATTACAATGTAAGACTTATCCTATGTTTTGCAGGCCTAG 767
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 702 TCAAGCCAAGGTTGTGAAGAAATTAAAATGTAAGACTTATCCTATGTTTTGCAGGCCTAG 761
Query 768 TCCTAAGCTAGATCCAGATTTGTAG 792
||| ||||||||||||||| |||||
Sbjct 762 TCCCAAGCTAGATCCAGATATGTAG 786
Score = 165 bits (89), Expect = 5e-40
Identities = 156/186 (84%), Gaps = 13/186 (7%)
Strand=Plus/Plus
Query 16 ATAGAGACAACCACTGATGAATCCACCGTCGCTTGCTCTCTGAACAAGGACATATCCGAC 75
||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 67 ATAGAGACAACCACTGACGAATCCACCGTCTCTTCCTCTCTGAACAAGGACAGATCCGAC 126
Query 76 TCCGACAC-AAGAGAAGATGATTA-T-T-CC---TCCGACGGAGAAAAAGAAGGAGAAGA 128
||||| || ||| || |||||||| | | || ||||| |||| |||||||||||||
Sbjct 127 TCCGAAACAAAG-GATGATGATTACTCTGCCGAGAGCGACGAAGAAGAAGAAGGAGAAGA 185
Query 129 CTACGAAAGCAACGGAGAAGAAGGAGACGA--AT-ATGATG-GCGAAAGCAACGAAGAGG 184
||||||||||||||||||||||| ||| || | ||||| | |||||| ||| |||||
Sbjct 186 CTACGAAAGCAACGGAGAAGAAGAAGAAGATGACGATGATAAG-GAAAGCGACGGAGAGG 244
Query 185 AAGATG 190
| ||||
Sbjct 245 ACGATG 250
> Ahg943349 jgi|Araly1|943349|scaffold_603893.1
Length=744
Score = 479 bits (259), Expect = 1e-134
Identities = 462/555 (83%), Gaps = 34/555 (6%)
Strand=Plus/Plus
Query 258 AGATAGTATAGTGGACGATGGATATTCAACAAACGATCAACCAGAGTGGGAAGTGGATAA 317
|||||| ||||||||||| ||| ||||| ||| ||||||| | || |||| ||||||||
Sbjct 182 AGATAGCATAGTGGACGACGGAGATTCAGCAAGCGATCAATCGGAATGGGGAGTGGATAG 241
Query 318 CTTCGATGATTTATATAGCG-ATTTCTGTTCACCTGATGAAGACTGTTATACCGACGAAG 376
|||||||| || || | || | ||||||||||||||||||| | ||||||||||||
Sbjct 242 CTTCGATG----AT-GAG-GAATAT-TGTTCACCTGATGAAGACTCTCATACCGACGAAG 294
Query 377 AAGATGAGCGTAAAAG-ACGTCTTTATCGTCGAAATCTCCACTTTAGTCGTGGTTTTCTG 435
||| |||| | ||||| ||||||||| || |||||||||||||| | ||| |||||
Sbjct 295 AAGTTGAG-GGAAAAGCCCGTCTTTATAAACGGAATCTCCACTTTAGCCATGGCTTTCTT 353
Query 436 GTGGAAAAAGGGA-T--T-CA--TCCACGTTC-CG-T--AT-GGATTGGT-GC-A-ATCT 481
|| ||| |||||| | | || ||||||||| || | | || || || || | ||||
Sbjct 354 GTTGAAGAAGGGATTGGTCCACGTCCACGTTCACGTTCCGTAGG-TT-GTGGCTATATCT 411
Query 482 TACTTGAACCAT-TGGACAGTGAACATTCTCCGGTTAAAGGAAGGACACAACTTCAATAC 540
||||| || | | ||||||||||||||||||||| |||||| |||||||| |||||||||
Sbjct 412 TACTTAAATC-TCTGGACAGTGAACATTCTCCGGCTAAAGGTAGGACACAGCTTCAATAC 470
Query 541 GCACAAGACATGGTCAAATTGTGTCTTCGCAAATACAATGCCTTAAAGGAAACCAATGTG 600
|||||| |||||| |||||||| ||||||||| |||||| ||||||| ||||||||||||
Sbjct 471 GCACAACACATGGCCAAATTGTCTCTTCGCAAGTACAATACCTTAAACGAAACCAATGTG 530
Query 601 ACATTGGATCATGTTGTAAGAGTGACAGGGTC-TTTCACTGGTAGGTGGGTTTCGTATAT 659
| ||||||||||||||||||||| |||| ||| ||| | | |||| | |||||||||
Sbjct 531 AAATTGGATCATGTTGTAAGAGTAACAGCGTCTTTTGGC-GTTAGGCAGACTTCGTATAT 589
Query 660 TACTTTTATGGCGAAAGAGTCTGA-GGACGATGATACGCTTGTGGAGTATCAAGCCAAGG 718
||||| ||||||||||| ||| | ||| |||||||||||||||||||||||| ||||||
Sbjct 590 CACTTTCATGGCGAAAGAATCTAAGGGA-GATGATACGCTTGTGGAGTATCAAACCAAGG 648
Query 719 TTG-TGAAGAAATTACAATGTAAGACTTATCCTATGTTTTGCAGGCCTAGTCCTAAGCTA 777
||| | || ||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 649 TTGCT-AAAAAATTTCAATGCAAGACTTATCCTATGTTTTGCAGGCCTAGTCCAAAGCTA 707
Query 778 GATCCAGATTTGTAG 792
||||||||| |||||
Sbjct 708 GATCCAGATATGTAG 722
> Ahg943348 jgi|Araly1|943348|scaffold_603892.1
Length=748
Score = 459 bits (248), Expect = 2e-128
Identities = 460/557 (83%), Gaps = 35/557 (6%)
Strand=Plus/Plus
Query 258 AGATAGTATAGTGGACGATGGATATTCAACAAACGATCAACCAGAGTGGGAAGTGGATAA 317
|||||| ||||||||||| ||| ||||| ||| ||||||| | || |||| ||||||||
Sbjct 182 AGATAGCATAGTGGACGACGGAGATTCAGCAAGCGATCAATCGGAATGGGGAGTGGATAG 241
Query 318 CTTCGATGATTTATATAGCG-ATTTCTGTTCACCTGATGAAGACTGTTATACCGACGAAG 376
|||||| | ||| || | || | | |||||||||||||||| | ||||||||||||
Sbjct 242 CTTCGACG----ATA-AG-GAATATAT-TTCACCTGATGAAGACACTCATACCGACGAAG 294
Query 377 AAGATGAGCGTAAAA-GACGTCTTTATCGTCGAAATCTCCACTTTAGTC--G-T-GGTTT 431
||| |||||| |||| ||||||||| || |||||||||||||| | | | || ||
Sbjct 295 AAGTTGAGCG-AAAATCCCGTCTTTATAAACGGAATCTCCACTTTAGCCATGTTCGG-TT 352
Query 432 TCTGGTGGAA-AA-AG---GG---A--TTCA--TCCACGTTCCGTATGGATTGG-TGCAA 478
||| |||||| || | || | | || ||||||||||||| || ||| | | |
Sbjct 353 TCTTGTGGAAGAAGGGCTTGGTCCACGTCCACGTCCACGTTCCGTAGGGGGTGGCT-CTA 411
Query 479 TCTTA-CTTGAACCAT-TGGACAGTGAACATTCTCCGGTTAAAGGAAGGACACAACTTCA 536
|||| |||| | | | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 412 -CTTATCTTGGATC-TCTGGACAGTGAACATTCTCCGGTTAAAGGAAGGACACAGCTTCA 469
Query 537 ATACGCACAAGACATGGTCAAATTGTGTCTTCGCAAATACAATGCCTTAAAGGAAACCAA 596
||||||||||||||||| |||||||| |||||||| ||||||||||| || ||||||||
Sbjct 470 ATACGCACAAGACATGGCCAAATTGTCCCTTCGCAAGTACAATGCCTTTAACGAAACCAA 529
Query 597 TGTGACATTGGATCATGTTGTAAGAGTGACAGGGTCTTTCACTGGTAGGTGGGTTTCGTA 656
||||| ||||||||||||||||||||||||||||| ||| | ||||||| ||||||
Sbjct 530 TGTGAAATTGGATCATGTTGTAAGAGTGACAGGGTGTTTTAGGGGTAGGTTTACTTCGTA 589
Query 657 TATTACTTTTATGGCGAAAGAGTCTGAGGACGATGATACGCTTGTGGAGTATCAAGCCAA 716
||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 590 TATCACTTTCATGGCGAAAGAATCTGAGGAGGATGATACGCTTGTGGAGTATCAAGCCAA 649
Query 717 GGTTGTGAAGAA-ATTACAATGTAAGACTTATCCTATGTTTTGCAGGCCTAGTCCTAAGC 775
|||| ||||| || | || | |||||||||||||||||||||||||||||||| ||||
Sbjct 650 GGTTACCAAGAATATAA-AACGCAAGACTTATCCTATGTTTTGCAGGCCTAGTCCCAAGC 708
Query 776 TAGATCCAGATTTGTAG 792
|||||| |||| |||||
Sbjct 709 TAGATCTAGATATGTAG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5