BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03580.1

Length=687
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891375 jgi|Araly1|891375|Al_scaffold_0007_3361                   93.5    2e-18


> Ahg891375 jgi|Araly1|891375|Al_scaffold_0007_3361
Length=282

 Score = 93.5 bits (50),  Expect = 2e-18
 Identities = 64/70 (91%), Gaps = 4/70 (6%)
 Strand=Plus/Plus

Query  603  AAAGGCTCCGAATGGAGAAAGCGGATCG-GACGGAGCAG-ATCAAGCGGATCAAGCAGAT  660
            |||||||||||||||||||||||||||| | ||||| || ||||||||||||| ||||||
Sbjct  212  AAAGGCTCCGAATGGAGAAAGCGGATCGAG-CGGAG-AGGATCAAGCGGATCATGCAGAT  269

Query  661  CAAGCTGAAC  670
            ||||| ||||
Sbjct  270  CAAGCAGAAC  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25237371054


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5