BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03590.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327467 jgi|Araly1|327467|fgenesh1_pm.C_scaffold_6002687 590 6e-168
> Ahg327467 jgi|Araly1|327467|fgenesh1_pm.C_scaffold_6002687
Length=639
Score = 590 bits (319), Expect = 6e-168
Identities = 518/609 (85%), Gaps = 33/609 (5%)
Strand=Plus/Plus
Query 145 TTTGATATGTTAATGGCGCCTGAATGGGATGTGCATAGCTTCGAAG-AGAAAACGATGAT 203
||||||||||||||||||||||||||||||||| |||||||||||| || | |||| |||
Sbjct 52 TTTGATATGTTAATGGCGCCTGAATGGGATGTGGATAGCTTCGAAGAAG-AGACGACGAT 110
Query 204 AAAAGATTCCATGGAAGCATCTTCTTCAGTGGTGGTTAGTTCGTGCCTGAAAAAGCGTAA 263
| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 111 AGAAGATTCCATGGAAGCATCTTCTTCAGTGGTTGTCAGTTCGTGCCTGACAAAGCGTAA 170
Query 264 AGCCGAGTTCGACCC------GGAGGATGAGGAAGAAAGCAATGGTGAGAAAGAAGAAGG 317
|| ||||||||||| |||||| |||||||| ||| |||||||| | ||| |
Sbjct 171 GGCTGAGTTCGACCCGGAAGAGGAGGAGGAGGAAGAGAGCGATGGTGAG--A-TTGAA-G 226
Query 318 CAGTGATGGGAAAGCCAAAATTGAGGAGCCTAAGGCTAAAACAGAT-TATTACTTTAAGG 376
| | |||||||||||| ||||||||| ||||||| | | || ||||||| ||||
Sbjct 227 -A---A-GGGAAAGCCAAAGTTGAGGAGCGTAAGGCTGGAGGA-ATAGATTACTTAAAGG 280
Query 377 TGCCAGAATGGGATGTGGACAGTTTCGATGCGCTTA-AGCCAACTGATCATTACA-AAGG 434
|||| ||||||||||||||||| ||||||| | ||| |||| ||||||||||| | ||
Sbjct 281 TGCCTGAATGGGATGTGGACAGCTTCGATG-GTTTAGAGCCCTTTGATCATTACAGAGGG 339
Query 435 ATTTAGACCAATGAATTTGGAGTGGGAAGCGATTAGGGGTATAAAAAACTTTCGCGAGTA 494
| | | ||||||| ||||||||||||||| ||| || || ||| ||||||||| |||
Sbjct 340 A-TAAAACCAATGGGCTTGGAGTGGGAAGCGCTTA-CGG-AT-AAAGACTTTCGCGCGTA 395
Query 495 CAGGGAAGAGATGGTCTATG-TTGTCTCCAAAAACTTAACCAA-GACAAGGTTTGATTTG 552
| |||||||||||||||||| ||||||||||||||| || ||| ||||| | |||| |
Sbjct 396 CTGGGAAGAGATGGTCTATGTTTGTCTCCAAAAACTCAA-CAAGGACAA-G---GATTCG 450
Query 553 AATGTGGAGTTGGTTGAAGTTGTGAGAGGTTATTATCGCGGAGGACCTAAATCGAAGTCA 612
|||||||||||||||||||||||||||||||||||||||| |||| | | | | ||||||
Sbjct 451 AATGTGGAGTTGGTTGAAGTTGTGAGAGGTTATTATCGCGCAGGAGCGAGAGCCAAGTCA 510
Query 613 TACATTACATTCATGGTAAGGAAGAAGCCAGATGGACCTCTTGGTGAGTATCAAGCCAAG 672
||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 511 TACATTACATTTATGGCGAGGGAGAAGCCAGATGGACCTCTTGTTGAGTATCAAGCCAAG 570
Query 673 TGTATGGTCACTTTACACAGAAAGAGGCATCCCATCCTCTGTAGGCCGACTCCTACACCA 732
|||||||| |||||| |||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 571 TGTATGGTTACTTTAGACAGAAAGAGGCATCCCATCCTATGTAGACCGGCTCCTACACCA 630
Query 733 AAGCCATAA 741
||||| |||
Sbjct 631 AAGCCTTAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5