BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03600.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490201 jgi|Araly1|490201|fgenesh2_kg.6__3335__AT4G03600.1 859 0.0
Ahg470345 jgi|Araly1|470345|fgenesh2_kg.1__299__AT1G03730.1 398 4e-110
> Ahg490201 jgi|Araly1|490201|fgenesh2_kg.6__3335__AT4G03600.1
Length=631
Score = 859 bits (465), Expect = 0.0
Identities = 566/611 (93%), Gaps = 21/611 (3%)
Strand=Plus/Plus
Query 200 AATGGCAGATCAAACAGAATCTCCAAGATCGTATCATATCTTCATCACAATCATGAGTAA 259
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 22 AATGGCAGATCACACAGAATCTCCAAGATCGTATCTTATCTTCATCAAAATCATGAGTAA 81
Query 260 AAGACGGACATGGGTTTGTCTCTTCATCGCTGTCTACGCAATTCTCGTATCTTCTTCATG 319
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 82 AAGACGGACATGGGTTTGTCTCTTCATCGCCGTCTACGCAATTCTCTTATCTTCTTCATG 141
Query 320 GAACCTCCTGAGATCAGTTCTTAACTGGTACAAGCTTCAATACACGTCATCAAATTCAGA 379
|||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||
Sbjct 142 GAACCTCCTGAGATCAGTTCTTAACTGGTACAAGCTCCAATACACATCATCATCTTCAGA 201
Query 380 TTATTCTCC-T-T-CA--A-------GATTACCGGCGGTATACGCGTCGGTGGTGCTCGG 427
|| |||||| | | || | |||| |||||||||||||||||||||||||||||
Sbjct 202 TTCTTCTCCGTCTCCATCACCGTCTCGATTGCCGGCGGTATACGCGTCGGTGGTGCTCGG 261
Query 428 TGCGATGTTTGGAGCTATGTCGATGGTGGCTGCTATGACGGTGGCGGTTCCGGCGGTGAT 487
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 262 TGCGATGTTTGGAGCTATGTCGATGGTGGCTGCTACGACGGTGGCGGTTCCGGCGGTGAT 321
Query 488 GGTGATTTGGATATCGGTGGTGGTGTTGCTTGCCTTCTTTGGGAAATCAAGAAGAGTTTT 547
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 322 GGTGATTTGGATATCGGTGGTGGTGTTACTTGCCTTCTTTGGGAAATCAAGAAGAGTTTT 381
Query 548 AGTGGTTGAAGGAAGGAAGATTACGAGAGAAGTTGTCGGATTTGTGTTTAAGGTTCTTTT 607
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 382 AGTGGTTGAAGGAAGGAAGATTACGAGAGAAGTTGTTGGATTTGTGTTTAAGGTTCTATT 441
Query 608 GAAAG-AAGGCAATGTTGTTGCTGCTTTTTGTGCTGTTTTAGCTTATTTTCTGCTTATTA 666
|||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 442 -AAAGGAAGGCAATGCTGTTGCTGTTTTTTGTGCTGTTTTAGCTTATTTTCTGCTTATTA 500
Query 667 GAAGAGATTTTGACTCATATTAAGGTTCTTGATTTTTAGATTATTTAGGGAATTTTGATC 726
|||||||||| || ||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct 501 GAAGAGATTTGGATTCAAATTAGGGTTCTTGATTATTAGATTATTTAGGGAATTTTGATC 560
Query 727 TA-----GATTATCTTGAGTCACTCCCGAATGTAAATGTAAAGTTAATTTAGAAAA-TCA 780
|| ||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 561 TACTTTTGATTATCTTGAGTCATTCCCGAATGTAAATGTAAAGTTAATTTAGAAAACT-A 619
Query 781 ATTGTTAGTAG 791
||||||| |||
Sbjct 620 ATTGTTAATAG 630
> Ahg470345 jgi|Araly1|470345|fgenesh2_kg.1__299__AT1G03730.1
Length=1010
Score = 398 bits (215), Expect = 4e-110
Identities = 410/501 (82%), Gaps = 26/501 (5%)
Strand=Plus/Plus
Query 220 CTCCAAGATCGTATCATATCTTCATCAC-AATCATGAGTAAAAGACGGACATGGGTTTGT 278
||||||||||||| | |||||| || | ||||||||| || ||||||||||||||||||
Sbjct 380 CTCCAAGATCGTACCTTATCTTTAT-GCGAATCATGAGCAAGAGACGGACATGGGTTTGT 438
Query 279 CTCTTCATCGCTGTCTACGCAATTCTCGTATCTTCTTCATGGAACCTCCTGAGATCAGTT 338
||||| | ||||||||||| |||||| | |||| ||||||||| | || | ||| ||
Sbjct 439 CTCTTTGTAGCTGTCTACGCGATTCTCTTGGCTTCCTCATGGAACTTTCTCACATCTGTA 498
Query 339 CTTAACTGGTACAAGCTTCAATACACGTCATCAAATTCAGATTATTCTCCTTCAAGATTA 398
|| | |||||||||||| || ||||||||||| | | ||||| || ||||||
Sbjct 499 CTCAGCTGGTACAAGCTCCAGTACACGTCATC----GCCG-----TCTCCGTCGAGATTA 549
Query 399 CCGGCGGTATACGCGTCGGTGGTGCTCGGTGC-GATGTTTGGAGCTATGTCGATGGTGGC 457
|||||||| |||||||| |||||| | || || | |||||||||| ||||||||||| ||
Sbjct 550 CCGGCGGTTTACGCGTCTGTGGTGTTAGGAGCTG-TGTTTGGAGCCATGTCGATGGTTGC 608
Query 458 TGC-TATGACGGTGGCGGTTCCGGCGGTGATGGTGATTTGGATATCGGTGGTGGTGTTGC 516
|| || |||| ||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 609 GGCGGCTG-CGGTTGCGGTCCCGGCGGTTATGGTGATTTGGATATCGGTGGTTGTGTTGC 667
Query 517 TTGCCTTCTTTGGGAAATCAAGAAGAGTTTTAGTGGTTGAAGGAAGGAAGATTACGAGAG 576
|||| || ||||||||||| ||||| || || || ||||||| | |||||||| ||||
Sbjct 668 TTGCGTTTTTTGGGAAATCGAGAAGGGTATTGGTTGTTGAAGCTCGTAAGATTACAAGAG 727
Query 577 AAGTTG-TCGGATTTGTGTTTAAGGTTCTTTTGAAAGAAGGCAATGTTGTTGCTGCTTTT 635
||| || | ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 728 AAG-TGTTTGGATTTGTGTTTAAGGTTCTTTTGAAAGAAGGCAATGCTGTTGCTGCGGTT 786
Query 636 TGTGCTGTTTTAG-CTTATTTTC-TGCTTATTAGAAGAG-ATTTTGACTC-ATATTAAGG 691
||||||||||| | || |||| | | |||||||||| || ||||||| || || ||| ||
Sbjct 787 TGTGCTGTTTTGGGCT-ATTT-CATTCTTATTAGAA-AGGATTTTGATTCGAT-TTAGGG 842
Query 692 TTCTTGATTTTTAGATTATTT 712
|| |||||||| ||| ||||
Sbjct 843 TTTTTGATTTTGGGAT-ATTT 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5