BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03610.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943337 jgi|Araly1|943337|scaffold_603881.1 944 0.0
> Ahg943337 jgi|Araly1|943337|scaffold_603881.1
Length=904
Score = 944 bits (511), Expect = 0.0
Identities = 603/648 (93%), Gaps = 3/648 (0%)
Strand=Plus/Plus
Query 265 ATCATTCTAACTCATGAGCACGCAGATGCGGTTCATGGCTTAGATGAAATTCGATCTCTT 324
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 240 ATCATTCTAACTCATGAGCACGCTGACGCGGTTCATGGCTTAGATGATATTCGATCTCTT 299
Query 325 CAACCTCGTGGTGCAACTATTGTTGATACCGATCCACTTCCCGTCTTTCTATCTCAATTT 384
||||||||||||||||||| || || ||| |||||||||| || |||||||||||||||
Sbjct 300 CAACCTCGTGGTGCAACTA-TG--GACACCTATCCACTTCCTGTGTTTCTATCTCAATTT 356
Query 385 ACAATGGAGAGTATTGCTACAAGGTTTCCTTATTTGGTTGAAAAGAAGGTAAAAGAAGTA 444
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 357 TCAATGGAAAGTATTGCTACAAGGTTTCCTTATTTGGTTGAAAAGAAGGTTAAAGAAGTA 416
Query 445 CCTAGACGAGTTTCACTTCTTGACTGGAAAAACATCGAAGAGAATTGTGACGAACCATTC 504
|||||||| ||||| || |||||||||| | ||| ||||||||||||||| ||||||||
Sbjct 417 CCTAGACGGGTTTCGCTGCTTGACTGGACTATCATTGAAGAGAATTGTGACAAACCATTC 476
Query 505 GCTGCCTCGGGCTTATCTTTCACGCCTCTTCCGGTGATGCATGGAGAGGACTACATTGCT 564
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 ACTGCCTCGGGCTTATCTTTCACGCCTCTTCCAGTGATGCATGGAGAGGACTACATTGCT 536
Query 565 TTAGGTTTCCTCTTCGGCGATAAAAGTAAAGTGGCTTATATATCAGACGTATCACGGATT 624
|||||||||||||| |||| |||||||||||||||||||||||| || || ||||| |||
Sbjct 537 TTAGGTTTCCTCTTTGGCGGTAAAAGTAAAGTGGCTTATATATCTGATGTTTCACGCATT 596
Query 625 CCACCGAGTACCGAGTATGCTATTTCCAAAGCTGGGGCTGGACAGTTAGATCTTCTTATC 684
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 597 CCACCGAGTACCGAGTATGCTATTTCCAAAGCCGGGGCTGGACAGTTGGATCTTCTTATC 656
Query 685 CTGGATACAAATATACCGTGGAAGAGAGGACCACATCCCACACACATCTGTTTTACAGAG 744
|||||||||||||||||| |||||||||||| |||||||||||||||||||||| | |||
Sbjct 657 CTGGATACAAATATACCGCGGAAGAGAGGACTACATCCCACACACATCTGTTTTCCTGAG 716
Query 745 GCTCTTGAGATCTTAAAGAGGCTATGTCCAAAGAGAGCGCTTTTAACGGGTATGACACAC 804
|||||||| ||| |||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 717 GCTCTTGAAATCATAAAGAGGCTCTGCCCAAAGAGAGCGCTTTTAACGGGCATGACACAC 776
Query 805 GAGTTTGATCACCATGAATACAATGAGATACTTGCAGAATGGTCTCTAAGGGAAGGAATC 864
|| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 777 GACTTTGATCACCATGAATACAATGAGATACTAGTGGAATGGTCTCTAAGGGAAGGAATC 836
Query 865 CATGTACAGCTTGCTCATGACGGATTACGGCTTCCAATAGACCTATGA 912
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 837 CATGTACAGCTTGCTCACGACGGATTACGGCTTCCAATAGACCTATGA 884
Score = 318 bits (172), Expect = 4e-86
Identities = 190/199 (95%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAATCAATCTGATGATGATGGAACGGCTCTGATCTTTCTTGGAACAGGCTGC 60
|||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 21 ATGGAGAAGAATCAATGTGATGATGATCGAACGGCTTTGATCTTTCTCGGAACAGGCTGC 80
Query 61 TCCGGTGCAGTTCCCGATTTCAGATGCTTACTCCAGCCGTCAGATCCTCCTTGCCATGTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 TCCGGTGCAGTTCCCGATTTCAGATGCTTACTCCAGCCGTCAGATCCTCCTTGCCATGTT 140
Query 121 TGTTCTCAGTCCCTCTCTTTACTTCCTCACCTTAACCCTAACTACAGATGCAATACATCG 180
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 141 TGTTCTCAGTCACTCTCTTTACTTCCTCATCTAAACCCTAATTACAGATGCAATACATCG 200
Query 181 CTCTTGATTGATTATTGCA 199
|||||||||||||||||||
Sbjct 201 CTCTTGATTGATTATTGCA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5