BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03620.1
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352465 jgi|Araly1|352465|fgenesh1_pg.C_scaffold_6003058 1513 0.0
Ahg943334 jgi|Araly1|943334|scaffold_603878.1 65.8 6e-10
> Ahg352465 jgi|Araly1|352465|fgenesh1_pg.C_scaffold_6003058
Length=927
Score = 1513 bits (819), Expect = 0.0
Identities = 897/934 (96%), Gaps = 8/934 (1%)
Strand=Plus/Plus
Query 97 ATGAGCCGTCTCCGAGCATTTTCTGCGCCGGATTTAGTCCCTTCAGATTCTGGATCTATT 156
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1 ATGAGCCGTCTCCGAGCATTTTCTGCGCCGGATTTAGTTCCTTCTGATTCTGGATCTATT 60
Query 157 ACATCATCACCAACAAGAACCATAGAGCACCAATCTCATGAAGATTCTGGTTTGGAAGGA 216
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ACATCATCACCAACAAGAACCATAGAGCACCAATCTCATGAAGATTCTGGTTTAGAAGGA 120
Query 217 ATCACTACGAACGTGAAGCTACTGCTGAAACTCGTTCAAGATCACAACGAAGCAACATCG 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATCACTACGAACGTGAAGCTACTGCTGAAACTCGTTCAAGATCACAACGAAGCAACCTCG 180
Query 277 AGGCACCACGATGATTGGAAAGTTCAGAGAGTCAACACTATGATGACGATTCTCGATGAT 336
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 181 AGGCACCACGATGATTGGAAGGTCCAGAGAGTCAACACGATGATGACGATTCTCGATGAT 240
Query 337 CTAAAGACACGAATCCAGAAAGCTCAACAACAATCATCATCTGGGAAAAAAGAGCTTAGA 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTAAAGACACGAATCCAGAAAGCTCAACAACAATCATCATCTGGGAAAAAAGAGCTTAGA 300
Query 397 CGATGCTACACCGATCTGAAA-CGGAGTCCTGATCTAACCAAGAGTCCAACAAAGCCACC 455
||||||| ||| ||||||||| ||| ||| ||||||||||||||||||||||||||| ||
Sbjct 301 CGATGCTTCACAGATCTGAAACCGG-GTCATGATCTAACCAAGAGTCCAACAAAGCCGCC 359
Query 456 ACAGAACGATCCTGAAGATATTCAGAAACTGAGAAAAGAGTTAAGCGCGAGTATGGCTGC 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACAGAACGATCCTGAAGATATTCAGAAACTGAGAAAAGAGTTAAGCGCGAGTATGGCTGC 419
Query 516 AAGAAAGAGTCTTCAAATGATGTGTTCAAGTTTAGGGAAGGAGAAAGAGATAATGGCTTT 575
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 420 AAGAAAGAGTCTTCAAATGATGTGTTCGAGTTTAGGGAAGGAGAAAGAGATTATGGCTTT 479
Query 576 GGAGCTTTCGAGGAAAGCTCACGAATTAAACGAAATGGAGGAGCTTGTAAGTGATTTTAG 635
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 480 GGAGCTTTCGAGGAAAGCTCACGAATTGAACGAAATGGAGGAGCTTATAAGTGATTTTAG 539
Query 636 GGCTCAAAATGAGAAATTACTTAAGAAAGTGCAGAATTGCGCGGTAGAGCATAATAAGGA 695
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GGCTCAAAATGAGAAATTACTTAAGAAAGTGCAGAATTGCGCGGCAGAGCATAATAAGGA 599
Query 696 GAAGAAAGAAGATATTGATGGTCCAGGTCCAGGAGACAACAATGTGCCTCTACAGGGAAG 755
|||||||| |||| ||||| ||||| | | | ||||||||||||||||||||||||||
Sbjct 600 GAAGAAAGGAGATGTTGATTGTCCA-G---A-G-GACAACAATGTGCCTCTACAGGGAAG 653
Query 756 AAACAAAGAGTTGTCTGAACAGCTACTCAAATCTATTGACGGATACCGATCTCTGAAAAG 815
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 654 AAACAAAGAGTTATCTGAACAGCTTCTCAAGTCTATTGACGGATACCGATCTTTGAAAAG 713
Query 816 GAAATACAAAGATGTTCAAGACGAAAATGGATCAATGAGACGAGCGCTTAGAGATTATGC 875
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 714 GAAATACAAAGATGTTCAAGAAGAAAATGGATCAATGAGACGAGCGCTTAGAGATTATGC 773
Query 876 AGAAGGAGTGAATGTTGGGACTCAGAGACTAACCAAGTTGCATGAAAAGATCACAAGAGA 935
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 774 AGAAGGAGTGAATGTTGGGACTCAGAGACTAACCAAGTTGCATGAAAAGATCACAAGAAA 833
Query 936 AGATGAAGTGAATATTGAGAATGAGATTTCAAATTTAGAGAAGTTGTTTCAAGGGCTTGG 995
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 834 AGATGAAGTGAATATTGAGAATGAGATTTCAGATTTAGAGAAGTTGTTTCAAGGGCTTGG 893
Query 996 TTTAAAGATTTTGAATCATTCCCAGAACAAGTAA 1029
||||||||||| |||||||||||| || ||||||
Sbjct 894 TTTAAAGATTTCGAATCATTCCCAAAAGAAGTAA 927
> Ahg943334 jgi|Araly1|943334|scaffold_603878.1
Length=712
Score = 65.8 bits (35), Expect = 6e-10
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Minus
Query 10 TCTGCACACTTTCTGAGCGTTTTCAAGTATCTCAACCACGC 50
|||||||||||||||||||||||||||||| |||| |||||
Sbjct 134 TCTGCACACTTTCTGAGCGTTTTCAAGTATTTCAATCACGC 94
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38275408668
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5