BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G03635.1 Length=693 Score E Sequences producing significant alignments: (Bits) Value Ahg943335 jgi|Araly1|943335|scaffold_603879.1 713 0.0 > Ahg943335 jgi|Araly1|943335|scaffold_603879.1 Length=945 Score = 713 bits (386), Expect = 0.0 Identities = 480/525 (91%), Gaps = 7/525 (1%) Strand=Plus/Plus Query 27 TCCTCTGCCGTTGAAAGACGGAGAGT-CCAGAAACTGGGCGGAGCTTCCGCCGGAACTAA 85 ||||| |||||||||||| ||||| | ||| ||||||||||||| |||||||||| ||| Sbjct 85 TCCTCCGCCGTTGAAAGAAGGAGAATCCCA-AAACTGGGCGGAGATTCCGCCGGAGTTAA 143 Query 86 CATCTTCGATTCTTCTCCATCTCAGCACGATTGAGATACTGAGAAACGCTCAAATTGTAT 145 ||||||||||||| |||||||||||||| ||||||||||||| ||||||||| | |||| Sbjct 144 CATCTTCGATTCTGCTCCATCTCAGCACTATTGAGATACTGAAAAACGCTCAGAGAGTAT 203 Query 146 GCAGATCGTGGCGACGCGTCTGCAAAGACCCATCCATGTGGCGCAAAATCGACATGAGAA 205 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 204 GCAGATCGTGGCGACGCGTCTGCAAAGACCCATCGATGTGGCGCAAAATCGACATGAGAA 263 Query 206 ACAACGGAATCTTTGGTTACGACTACG--A-CA-GT-CCGTCACGCCGTTGATCTCAGCG 260 |||||||||| |||||||||||||||| | | || ||||||||||| |||||||||| Sbjct 264 ACAACGGAATATTTGGTTACGACTACGATAGGATGTGTCGTCACGCCGTCGATCTCAGCG 323 Query 261 AAGGTGGTTTAGTCGAAATCAACATGGTACACTTCGGCAACGATTCTCTCTACTCCTACA 320 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 AAGGCGGTTTGGTCGAAATCAACATGGTACACTTCGGCAACGATTCTCTCTACTCCTACA 383 Query 321 TCGCCCAAAGATCAAGTAATCTGAGATGCCTTAGGCTTGCAATGTGCTATCCACTAACTG 380 | || ||||||| |||||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 384 TTGCTGAAAGATCGAGTAATCTGAGATGCCTTAGACTTGCTATGTGCTATCCACTAACAG 443 Query 381 GCAATGGATTTGTCAGTGCAGTCATGAAGCTCTCATTCCTTGAGGAACTCGATATTTCAC 440 |||| || |||||||| ||||||||| |||||||||||||||| |||||||| ||||||| Sbjct 444 GCAAGGGGTTTGTCAGCGCAGTCATGCAGCTCTCATTCCTTGAAGAACTCGAGATTTCAC 503 Query 441 AGGGCTATACACAACTGGATTTGAAAGCTATAGGCCACTCTTGCCCACTACTGAAGACAT 500 | |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 504 ACGGCTATGCACAACTGGATTTGAAAGCTATAGGCCAGTCTTGCACACTACTGAAGACAT 563 Query 501 TCAAGCTAAACCGTCCTTCTTTCAGCCGGTTCGTTAAATATGATG 545 ||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 564 TCAAGCTAAACCGCCCTTCTTTCAGCCGGTACGTTAAATATGATG 608 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25466108556 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5