BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G03635.1

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943335 jgi|Araly1|943335|scaffold_603879.1                        713    0.0  


> Ahg943335 jgi|Araly1|943335|scaffold_603879.1
Length=945

 Score =  713 bits (386),  Expect = 0.0
 Identities = 480/525 (91%), Gaps = 7/525 (1%)
 Strand=Plus/Plus

Query  27   TCCTCTGCCGTTGAAAGACGGAGAGT-CCAGAAACTGGGCGGAGCTTCCGCCGGAACTAA  85
            ||||| |||||||||||| ||||| | ||| ||||||||||||| ||||||||||  |||
Sbjct  85   TCCTCCGCCGTTGAAAGAAGGAGAATCCCA-AAACTGGGCGGAGATTCCGCCGGAGTTAA  143

Query  86   CATCTTCGATTCTTCTCCATCTCAGCACGATTGAGATACTGAGAAACGCTCAAATTGTAT  145
            ||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |  ||||
Sbjct  144  CATCTTCGATTCTGCTCCATCTCAGCACTATTGAGATACTGAAAAACGCTCAGAGAGTAT  203

Query  146  GCAGATCGTGGCGACGCGTCTGCAAAGACCCATCCATGTGGCGCAAAATCGACATGAGAA  205
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  204  GCAGATCGTGGCGACGCGTCTGCAAAGACCCATCGATGTGGCGCAAAATCGACATGAGAA  263

Query  206  ACAACGGAATCTTTGGTTACGACTACG--A-CA-GT-CCGTCACGCCGTTGATCTCAGCG  260
            |||||||||| ||||||||||||||||  |  | ||  ||||||||||| ||||||||||
Sbjct  264  ACAACGGAATATTTGGTTACGACTACGATAGGATGTGTCGTCACGCCGTCGATCTCAGCG  323

Query  261  AAGGTGGTTTAGTCGAAATCAACATGGTACACTTCGGCAACGATTCTCTCTACTCCTACA  320
            |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  AAGGCGGTTTGGTCGAAATCAACATGGTACACTTCGGCAACGATTCTCTCTACTCCTACA  383

Query  321  TCGCCCAAAGATCAAGTAATCTGAGATGCCTTAGGCTTGCAATGTGCTATCCACTAACTG  380
            | ||  ||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct  384  TTGCTGAAAGATCGAGTAATCTGAGATGCCTTAGACTTGCTATGTGCTATCCACTAACAG  443

Query  381  GCAATGGATTTGTCAGTGCAGTCATGAAGCTCTCATTCCTTGAGGAACTCGATATTTCAC  440
            |||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||
Sbjct  444  GCAAGGGGTTTGTCAGCGCAGTCATGCAGCTCTCATTCCTTGAAGAACTCGAGATTTCAC  503

Query  441  AGGGCTATACACAACTGGATTTGAAAGCTATAGGCCACTCTTGCCCACTACTGAAGACAT  500
            | |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct  504  ACGGCTATGCACAACTGGATTTGAAAGCTATAGGCCAGTCTTGCACACTACTGAAGACAT  563

Query  501  TCAAGCTAAACCGTCCTTCTTTCAGCCGGTTCGTTAAATATGATG  545
            ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct  564  TCAAGCTAAACCGCCCTTCTTTCAGCCGGTACGTTAAATATGATG  608



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25466108556


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5