BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03820.2
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895493 jgi|Araly1|895493|Al_scaffold_0006_3489 2054 0.0
Ahg492639 jgi|Araly1|492639|fgenesh2_kg.7__2072__AT4G22270.1 606 1e-172
> Ahg895493 jgi|Araly1|895493|Al_scaffold_0006_3489
Length=1362
Score = 2054 bits (1112), Expect = 0.0
Identities = 1264/1339 (94%), Gaps = 4/1339 (0%)
Strand=Plus/Plus
Query 43 ATGGAAGAATCATCAAACCAACAAATCCTCAACTCC-GAGACCCGACCCGACCCGATTCA 101
|||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||
Sbjct 1 ATGGAAGAATCATCAAACCAACAATTCCTCAACTCCTCA-ACCCGACCCGACCCGATCCA 59
Query 102 AAAACCACCGGAATCACCAGCCACCAAACTCTCATTCCCGAGACT-CTTCCTCTGGTTTG 160
|||||||||||||||||||||||||||| |||| ||||||| ||| ||| |||||||| |
Sbjct 60 AAAACCACCGGAATCACCAGCCACCAAATTCTCGTTCCCGAAACTCCTT-CTCTGGTTCG 118
Query 161 ATCAATCAAATCGCATCAAAACTCTGCTCTCATGGTCCATCTTCTTCCTCCTCGCCGTCA 220
||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 ATCAATCAAGTCGCGTCAAAACTCTGCTTTCATGGTCCATCTTCTTCCTCCTCGCCGTCA 178
Query 221 TCGTCCCAATGATCTCACACTTCGTGCTAATCTGCGCCGATTGCGATTTCAAACACCGTC 280
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 TCGTCCCAATGATCTCTCACTTCGTGCTAATCTGCGCCGACTGCGATTTCAAACACCGTC 238
Query 281 GTCCTTACGACGGTTTAGTGCAGCTTTCGTTATCGATCTTCGCCGGAATCTCGTTCGTTA 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTCCTTACGACGGTTTAGTGCAGCTTTCGTTATCGATCTTCGCCGGAATCTCGTTCGTTA 298
Query 341 GTCTCTCAGATTGGTCCAAGAAATATGGAATCCGAAGGTTTCTCTTCTTCGATAAGCTTA 400
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 GTCTCTCAGATTGGTCCAAGAAATATGGAATCCGAAGATTTCTCTTCTTCGATAAGCTTA 358
Query 401 AAGATGTTAGCGATAAAGTTAGGATCGGATACGAAGCTAAAATCCAGAGATCAATGAAGC 460
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 359 AAGATGTTAGCGATAAAGTTAGGTTCGGATACGAAGCTGAAATCCAGAGATCAATGAAGC 418
Query 461 TACTAGCTATCTTTGTCCTTCCATCGACAACGCTTCAAGCTATCTATCGCATTTGGTGGT 520
|||| || ||||| ||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct 419 TACTGGCAATCTTCGTCCTTCCATCGATAACGCTTCAAGCGATTTATCGCATTTGGTGGT 478
Query 521 ATGCTTCAGGCTTTAACCAAATCCCTTACATTATAAACCCAACGCTGAGCCATGTCTTAG 580
||||||||||||| ||||||||||| ||||| || ||||||| | |||||||||||||||
Sbjct 479 ATGCTTCAGGCTTCAACCAAATCCCATACATAATCAACCCAATGGTGAGCCATGTCTTAG 538
Query 581 CCTGCACACTCCAGCTCTCTTCTTGGCTCTACCGTACATCACTCTTCATCATTGCTTGTA 640
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 539 CCTGCACACTCCAGCTCTCCTCTTGGCTCTACCGTACATCACTCTTCATCATCGCTTGTA 598
Query 641 TCCTCTACCAAAACATCTGCCACCTCCAGGTCCTCCGTCTTGATGAATTCGCACGCTGCT 700
||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
Sbjct 599 TCCTCTACCAAAACATCTGTCACCTCCAGGTCCTCCGTCTTGATGAATTCGCCCGTTGTT 658
Query 701 TCGCCTCTGAGATCAAAGATTTCAGTTCCATACTCGCCGAGCATCTCAAAATCCGTCGTG 760
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 TCGCCTCTGAGATCAAAGATTTTAGTTCCATACTCGCCGAGCATCTCAAAATCCGTCGTG 718
Query 761 AACTGAAGATTGTCAGTCACCGGTTCAGACGATTCATTCTTTTGTCATTGTTTTTCGTCA 820
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 719 AACTGAAGATTGTTAGTCACCGTTTCAGGCGATTCATTCTTTTGTCATTGTTTTTCGTCA 778
Query 821 CTGCCACTCAGTTCATGGCATTGCTGACTACCATCAGAGCTAGTGTTCCCTTTAATATCT 880
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 779 CTGCCACTCAGTTCATGGCATTGCTTACCACCATCAGAGCTAGTGTTCCTTTTAATATCT 838
Query 881 ACGAAGTTGGCGAGCTCGCGTTATGCTCCACAAGCTTGGTGTCAGGACTATTCATATGCT 940
||||||||||||| |||||||||| ||||| ||||||||| ||||| |||||||||||||
Sbjct 839 ACGAAGTTGGCGAACTCGCGTTATCCTCCATAAGCTTGGTATCAGGGCTATTCATATGCT 898
Query 941 TGAAAAGTGCAACACAAATGACTCACAAAGCTCAATCAGTAACGAGCATCGCCACAAAGT 1000
||||||||||||| || ||||| || ||||||||||| ||||| ||||||||||||||||
Sbjct 899 TGAAAAGTGCAACGCAGATGACCCATAAAGCTCAATCTGTAACTAGCATCGCCACAAAGT 958
Query 1001 GGAACGTGTGCGCGTCTTTAGATACATTTGATGTTCTTTATGACGGAGAGACTCCTAAAT 1060
||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 959 GGAACGTTTGCGCATCTTTAGATACATTTGATGTTCTTGATGACGGAGAGACTCCTAAAT 1018
Query 1061 GTCCAACAACTACACAACATTCCCAGATTTTATCGCGTCGTCGTAATGTTGTTCAATCGT 1120
||||||| || | ||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1019 GTCCAACGACCATACAACATTCCCAGATTTTATCGCGTCGTCGTAATGTTATCCAATCAT 1078
Query 1121 CTGATGATGATGAAGAAGGAGAAGGAGATGACAATGATCTTGAGATACATCCAATCTTTG 1180
|||| || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1079 CTGACGACGATGAAGAAGGAGAAGGAGATCACAATGATCTTGATATACATCCAATCTTTG 1138
Query 1181 CCCGCGCCATTTCTTCTCAGAAACGTCAAGCTCTAGTGACCTATCTAGAGAACAACAGAG 1240
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CCCGCGCCGTTTCTTCCCAGAAACGTCAAGCTCTAGTGACCTATCTAGAGAACAACAGAG 1198
Query 1241 CAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCA 1300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAGGGATCACAGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCA 1258
Query 1301 TCGAACTTGCTCTTCTTCTATGGCTGCTCAAAAAGACAATCAGTAATTTTATATGTTTCT 1360
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||
Sbjct 1259 TCGAACTTGCTCTTCTTCTATGGCTACTCAAAAAGACAATCGGTAATGTTATATGTTTCT 1318
Query 1361 ACTCTGAATCCATATTTTC 1379
||||| |||||||||||||
Sbjct 1319 ACTCTAAATCCATATTTTC 1337
> Ahg492639 jgi|Araly1|492639|fgenesh2_kg.7__2072__AT4G22270.1
Length=1532
Score = 606 bits (328), Expect = 1e-172
Identities = 946/1232 (77%), Gaps = 91/1232 (7%)
Strand=Plus/Plus
Query 151 CTCTGGTTTGATCAATCAAATCGCATCAAAACTCTGCTCTCATGGTCCATCTTCTTCCTC 210
|||||||| || || ||||||| | || ||||||| || |||||| | ||||||||
Sbjct 144 CTCTGGTTCGACCAGTCAAATCACGGCACGGCTCTGCTTTCGTGGTCCGTGTTCTTCCTT 203
Query 211 CTCGCCGTCATCGTCCCAATGATCTCACACTTCGTGCTAATCTGCGCCGATTGCGATTTC 270
|||| ||||||||| || || ||||| |||||| |||| |||| | || |||||||||
Sbjct 204 CTCGTCGTCATCGTTCCGATAATCTCTCACTTCTTGCTCGTCTGTTCAGACTGCGATTTC 263
Query 271 AAACACCGTCGTCCTTACGACGGTTTAGTGCAGCTTTCGTTATCGATCTTCGCCGGAATC 330
| ||||| || || ||||||| | || ||||||||||||||||| |||| |||||||
Sbjct 264 CATCACCGACGACCGTACGACGCCGTGGTACAGCTTTCGTTATCGATTTTCGGCGGAATC 323
Query 331 TCGTTCGTTAGTCTCTCAGA-TTGGTCCAAGAAATATGGAATCCGAAGGTTTCT-CTTCT 388
||||||||||| ||||| || |||||| | ||| | ||| || ||| ||||| | ||||
Sbjct 324 TCGTTCGTTAGCCTCTC-GATTTGGTCGAGGAAGTTTGGGATGCGACGGTTTTTGTTTCT 382
Query 389 TCGATAAGCTTAAAGATGTTAGCGATAAAGTTAGGATCGGATACGAAGCTAAAATCCAGA 448
| ||||||||| |||| |||||| ||||||||||||| |||||||||| |||| ||||
Sbjct 383 T-GATAAGCTTTGGGATGCTAGCGACAAAGTTAGGATCGAATACGAAGCTGAAATTCAGA 441
Query 449 GATCAATGAAGCTACTAGCT-ATCTTTGTCCTTCCATCGAC-AACGCTTC-AAGCTATCT 505
||||| | || | ||| | ||||| ||||| ||||| || ||| | || |||| ||||
Sbjct 442 GATCACTAAAACGGCTA-ATGATCTTCGTCCTCCCATC-ACTAACAC-TCGAAGCAATCT 498
Query 506 ATC-GCATTTGGTGGT--ATGCTTCAGGCTTTAACCAAATCCCTTACATTATAAACCCAA 562
| | | || ||||||| || | || |||| | || | || |||||||| || || ||
Sbjct 499 A-CAGAATCTGGTGGTACAT-C-TCTGGCTCTCACGAGATTCCTTACATCATCAATCCTG 555
Query 563 CGCTGAGCCATGTCTTAGCCTGCACACTCCAGCTCTCTTCTTGGCTCTACCGTACATCAC 622
|| ||||| ||| | || ||||| |||||||| ||||||||||| |||||||| ||
Sbjct 556 TTCTTAGCCACGTCGTCGCTTGCACTCTCCAGCTATCTTCTTGGCTTTACCGTACCTCTT 615
Query 623 TCTTCATCATTGCT-TGTATCCTCTACCAAAA-CATC-TGCCACCTCCAGGTC-CTCCGT 678
| |||||||||| | || || ||||| ||||| || | || || || || | | || |||
Sbjct 616 TATTCATCATTG-TCTGCATTCTCTA-CAAAATCA-CATGTCATCTTCA-GACTCTTCGT 671
Query 679 CTTGATGAATTCGCACGCTGCTTCGCCTCTGAGATCAAAGA-TTTCAGTTCCA--TACTC 735
|| ||||| ||||| ||||||||||| ||||| |||| || ||| | | || | |||
Sbjct 672 CTCGATGATTTCGCTCGCTGCTTCGCTTCTGAAATCACTGACGTTC-GCT-CAGCT-CTC 728
Query 736 GCCGAGCATCTCAAA-ATCCGTCGTGAA-CTGAAGATTGTCAGTCACCGGTTCA-GACGA 792
| |||||||| ||| ||||||||| || ||| |||||| ||||| ||||||| || ||
Sbjct 729 GGCGAGCATC-AAAAGATCCGTCGT-AATTTGAGGATTGTTAGTCATCGGTTCAGGA-GA 785
Query 793 TTCATTCTTTTGTCATTG-TTTTTCGTCACTGCCACTCAGTTCATGGCATTGCTGACTAC 851
|| ||||||||||| ||| || || || ||||| |||||||||||||| ||||| |||||
Sbjct 786 TTTATTCTTTTGTCTTTGATTCTT-GTTACTGCTACTCAGTTCATGGCTTTGCTTACTAC 844
Query 852 CATC-AGAGCTAGTGTTCCCT-TTAATATCTACGAAGTTGGCGAGCTCGCGTTATGCTCC 909
| | |||||||||||| || |||||||||| ||||||||||||||||||||||| | |
Sbjct 845 TA-CGAGAGCTAGTGTT-GCTGTTAATATCTATGAAGTTGGCGAGCTCGCGTTATG-TTC 901
Query 910 A-CAAGCTTGGTGT-CAGGACTATTCATATGCTTGAAAAGTGCAACACAA-ATGACTCAC 966
| || ||||| | ||||| |||||||||| |||| ||||||||| || || ||||||
Sbjct 902 ATTGAGTTTGGT-TACAGGAGTATTCATATGTTTGAGAAGTGCAAC-GAAGATAACTCAC 959
Query 967 AAAGCTCAATCAGTAACGAGCATCGCCA-C-AAAGTGGAACGTGTGCGCGTC-TTTAGA- 1022
||||||||||| ||||| ||| | | || | ||| |||||||| ||||| | || ||
Sbjct 960 AAAGCTCAATCTGTAACCAGCCTTG-CAGCTAAA-TGGAACGTTTGCGCCACAGTT-GAC 1016
Query 1023 TACATTTGATGTTCTTTATGACGGAGAGACTCCTAAAT-G-TCCAACAACTACACAACAT 1080
| | || ||| |||| ||| | || | |||||| | | | ||| | | | | |
Sbjct 1017 T-CGTTCGATCATCTTGATGGC-GA-A-ACTCCT-ACTGGTTCC-ATGA-T---TGA-A- 1064
Query 1081 TCCCAGATTTTATCGCGTCGTCGTAATGTTGTTCAAT-CGTCTGATGATGATGAAGAAGG 1139
|| || | ||| | | | || | |||| | | || |||| |||||||||||||||
Sbjct 1065 TCTCA-AGTTT-CCCCAT-GTGGCAATG-CGATGGATACGTC---TGATGATGAAGAAGG 1117
Query 1140 AGAAGGAGATGACAAT---GATCTTG--A-GATACATCCAATCTTT-GCCCGCGCCATTT 1192
||||||||||||| || ||| | | ||||||||| || || ||| | ||||
Sbjct 1118 AGAAGGAGATGACGATCTTGATAATACCAAGATACATCCGAT-TTACGCCAATACAATTT 1176
Query 1193 CTT-CTCAGAAACGTCAAGCTCTAGTGACCTATCTAGAGAACAACAGAGCAGGGATCACT 1251
||| | || |||||||||||||||||||| ||| |||||||||||| ||| |||||||||
Sbjct 1177 CTTAC-CAAAAACGTCAAGCTCTAGTGACGTATTTAGAGAACAACAAAGCTGGGATCACT 1235
Query 1252 GTTTACGGATTC-TTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGC 1310
|| || || ||| ||| | |||| ||||||||| || ||| ||| |||| ||||| ||
Sbjct 1236 GTGTATGGCTTCCTTG-TAGATAGGTCATGGTTGCATACGATTTTCGGCATTGAACTCGC 1294
Query 1311 TCTTCTTCTATGGCTGCTCAA-AAAGACAATC 1341
|||||| |||||| ||||||| ||| ||||||
Sbjct 1295 TCTTCTACTATGGTTGCTCAATAAA-ACAATC 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5