BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03930.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914035 jgi|Araly1|914035|Al_scaffold_0001_4289 1661 0.0
Ahg931451 jgi|Araly1|931451|scaffold_303908.1 1511 0.0
Ahg914026 jgi|Araly1|914026|Al_scaffold_0001_4280 1323 0.0
Ahg914199 jgi|Araly1|914199|Al_scaffold_0001_4453 1007 0.0
Ahg337083 jgi|Araly1|337083|fgenesh1_pg.C_scaffold_1003648 715 0.0
Ahg907931 jgi|Araly1|907931|Al_scaffold_0002_1012 187 2e-46
> Ahg914035 jgi|Araly1|914035|Al_scaffold_0001_4289
Length=1533
Score = 1661 bits (899), Expect = 0.0
Identities = 1331/1535 (87%), Gaps = 47/1535 (3%)
Strand=Plus/Plus
Query 47 TGGTTATTGGTGTTAGCAAAGAATATTGTGATGACAAACACTCATGTCAAAACT-TTTTG 105
|||| || || ||| |||||| ||| ||| ||||||| ||||||||||| | |||||
Sbjct 2 TGGTGATCGGAGTTTGCAAAGGATA---TGACAACAAACAGTCATGTCAAAA-TCTTTTG 57
Query 106 TTGGAGCTTAAGACAGCT-TCCTCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGAT 164
|||||||| ||||| | | ||||||||||||||| |||| ||| ||||||| ||||||||
Sbjct 58 TTGGAGCTCAAGAC-GGTATCCTCGTCACTCTCGAAGATGAGATGTCGTGATTTATTGAT 116
Query 165 CATCGTTTTGAAGAATTCCGTGCGGAAGATCGACATGGCTATGATTGGTGTGATGGAAGA 224
|||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 117 CATCGTTTTGAAGAATTCCGTGTGGAGGATCGATATGGCTATGATTGGTGTGATGGAAGA 176
Query 225 TACAAAACAACATGAGGAGATGGAGAATGATAAGCTAT-GTTTGAAGGAGGACACAAATC 283
|||||||| || |||||||||||||||||||| ||| | || ||||||||||||||||||
Sbjct 177 TACAAAACTACTTGAGGAGATGGAGAATGATATGCT-TGGTGTGAAGGAGGACACAAATC 235
Query 284 TATTTGAGGAGATGATGGAGTCGGCAAAAGATAGGATGATCCGTTCAGTGGAGGAACTCT 343
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 236 TGTTTGAGGAAATGATGGAGTCGGCAAAAGATAGGATCATCCGTTCAGTGGAGGAACTCT 295
Query 344 TAGGAGGAGAATTCCCTTATCTTGGATCTTACGAAAACATCCACACTTGGCTCAGTGGCG 403
|| |||||||| || | |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 296 TAAGAGGAGAAAGCCATAATCTTGGATCTTACGAAAACGTCCACACTTGGCTCAGTGGTG 355
Query 404 TTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGACGGTGCCTATAAACGTCGGG 463
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 356 TTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGAAGGTGCCTATAAACGTCGGG 415
Query 464 TCGAGCCACAGCTTCAAGACCTCATTTCTAAGGCAAAG-GTAGCTTTGGCTC-TTTTTAT 521
|||||||| |||| | ||||||||||||| ||| ||| ||||||||||| | |||||||
Sbjct 416 TCGAGCCAGTGCTTGAGGACCTCATTTCTAGGGC-AAGAGTAGCTTTGGC-CATTTTTAT 473
Query 522 CTCCATTTCGCCGAGAGACAACACCGAACTTAACTCGGTGGTTCCCAATAGCCCGTCTTG 581
||| |||||||||| |||| ||||||||||||| ||||||||||||||| |||| |||||
Sbjct 474 CTCTATTTCGCCGATAGACGACACCGAACTTAAGTCGGTGGTTCCCAATGGCCCATCTTG 533
Query 582 GTTATCTCATGTTGACAAGAAAGATCTATATCTCAATGCTGAGGCTCTAAAAAAGATTGC 641
||||||| | |||||||||||| |||||||||||||| |||||| |||||| ||||||||
Sbjct 534 GTTATCTAACGTTGACAAGAAATATCTATATCTCAATCCTGAGGTTCTAAAGAAGATTGC 593
Query 642 CGATGTTGTGGTCGCGAAA-GATGGGACCGGAAAGTACAACACAGTGAATGCGGCCATTG 700
||||||||||||||| ||| ||||||| |||| | ||||||||| |||||| ||||||||
Sbjct 594 CGATGTTGTGGTCGC-AAAGGATGGGATCGGAGATTACAACACATTGAATGAGGCCATTG 652
Query 701 CAGCAGCACCTCAACACAG-CCACAAGAGATTCATCATCTATATAAAGACAGGCATTTAT 759
||| | |||| || |||| | | ||||||||| |||||||||||||||||||| | |||
Sbjct 653 CAGTGGTACCTGAATACAGTCGA-AAGAGATTCGTCATCTATATAAAGACAGGCGTCTAT 711
Query 760 GATGAAATCGT-CGCCATTGAGAATACGAAACCCAATTTAACTCTTATAGGTGATGGTCA 818
|||||||| || || |||| || ||||||| ||||||||||||| || |||||||||||
Sbjct 712 GATGAAATTGTCCG-TATTGGGAGTACGAAAGCCAATTTAACTCTCATCGGTGATGGTCA 770
Query 819 AGATTCAACCATCATCACGGGCAATTTAAGCGCTAGCAATGTTAGAAGAACG-TTCTACA 877
||||||||||||||||||||||||||||||| || ||| || || |||| ||| | |
Sbjct 771 AGATTCAACCATCATCACGGGCAATTTAAGCTATAATGATGGTAAAACAACGTTTC-AAA 829
Query 878 CTGCAACTTTTGCTTCTAATGGTAAAGGATTCATCGGAGTAGACATGTGCTTCCGAAACA 937
| |||||| |||||||||||||||| || ||||||||| |||||||||||||||| ||||
Sbjct 830 CCGCAACTGTTGCTTCTAATGGTAATGGTTTCATCGGAATAGACATGTGCTTCCGGAACA 889
Query 938 CGGTC-GGGCCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTC 996
||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CGG-CTGGACCGGCAAAGGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTC 948
Query 997 ATTTACAGATGTCGTGTCGA-GGGATATCAGGATGCCTTGTATCCTCACATAGACCGCCA 1055
|||||| |||||||| |||| ||| ||||||||||| |||||| |||| | |||||||||
Sbjct 949 ATTTACCGATGTCGTATCGATGGG-TATCAGGATGCGTTGTATTCTCAAAGAGACCGCCA 1007
Query 1056 GTTTTATAGGGAGTGCTTTATTACCGGTACTGTAGATTTCATTTGTGGAAACGCAGCGGC 1115
|||||||||||||||||||||||||| ||| |||||| || ||||||||||| |||||
Sbjct 1008 ATTTTATAGGGAGTGCTTTATTACCGGCACTACAGATTTTATCTGTGGAAACGCCGCGGC 1067
Query 1116 GGTATTTCAATTCTGCCAGATTGTAGCAAGAC-AGCCTAAT-ATGGGGCAAAGCAATTTC 1173
|| || ||||||||||| ||||||||||||| | || | | | || || |||||| |
Sbjct 1068 CGTCTTCCAATTCTGCCAAATTGTAGCAAGACTA-CCGA-TGAAAGGACATAGCAATGTG 1125
Query 1174 ATAACCGCTCAATCACGCGAGAC-TAAGGACGACAAATCGGGCTTCTCAATTCAAAACTG 1232
||||||||||| |||||| | | || ||| ||||| ||||||||||| |||||||| ||
Sbjct 1126 ATAACCGCTCAGTCACGC-ACAAGTATGGAAGACAACTCGGGCTTCTCCATTCAAAAATG 1184
Query 1233 CAACATCACAGCAAGTTCGGATCTAGATAC----A--GCAACCGTAAAAACGTATCTTGG 1286
||| ||||| |||||||| ||||||||| | | |||||||| || |||||| ||||
Sbjct 1185 CAATATCACTGCAAGTTCTGATCTAGATCCGGTTAAAGCAACCGTGAAGACGTAT-TTGG 1243
Query 1287 AAGG-CCTTGGAGGATATT-TTCAACAGTCGCGGTTCTGCAGTCTTTCATCGGTGATTTA 1344
| || ||||||| ||| ||||||||| | |||||| || ||||||||||||||||||
Sbjct 1244 GTCGTCCATGGAGGA-ATTATTCAACAGTTGTGGTTCTACAATCTTTCATCGGTGATTTA 1302
Query 1345 GTTGATCCCGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTGTCAACTCTCCACTAC 1404
||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 1303 GTTGATCCCGCAGGCTGGACTCCTTGGAAAGGAGAAACTGGTCTATCAACTCTCTACTAC 1362
Query 1405 CGCGAATATCAAAATAGGGGTCCGGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTC-GGG 1463
||||||||||||| || |||| |||||||||||||||| |||||| |||||| | |||
Sbjct 1363 GGCGAATATCAAAACAGCGGTCTAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGG 1422
Query 1464 CTTTAAAGTTATGAAAGATCCTAAACAGGCTACAGA-ATTCACTGT-AGCCAAGCTCTTA 1521
|||| |||||| | |||||||||| |||||||| | ||| ||||| | ||||||| |||
Sbjct 1423 -TTTAGAGTTATTACAGATCCTAAAGAGGCTACA-ACATTTACTGTTA-CCAAGCTATTA 1479
Query 1522 GATGGAGAAACTTGGCTAAAAGAAAGTCGAATTCC 1556
|| |||||| | ||||| |||| |||| || ||||
Sbjct 1480 GACGGAGAATCGTGGCTGAAAGCAAGTGGAGTTCC 1514
> Ahg931451 jgi|Araly1|931451|scaffold_303908.1
Length=1684
Score = 1511 bits (818), Expect = 0.0
Identities = 1304/1534 (85%), Gaps = 51/1534 (3%)
Strand=Plus/Plus
Query 58 GTTAGCAAAGAATATTGTGATGACAAACACTCATGTCAAAACTTTTTGTTGGAGCTTAAG 117
||| |||||| ||| ||| |||||| | |||||||||||| ||||||||||||| |||
Sbjct 144 GTTTGCAAAGGATA---TGACGACAAAAAATCATGTCAAAACCTTTTGTTGGAGCTCAAG 200
Query 118 ACAGCT-TCCTCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGATCATCGTTTTGAA 176
| | | ||||||||||| |||||||| ||| ||||||| |||||||| |||||| ||
Sbjct 201 A-TGGTATCCTCGTCACTTTCGGAGATGAGATGTCGTGATTTATTGATTGCCGTTTTAAA 259
Query 177 GAATTCCGTG-CGGAAGATCGACA-TGGCTATGATTGGTGTGATGGAAGATACAAAACAA 234
||| || ||| | || |||| ||| ||| |||| ||||||||| |||||| || |||| |
Sbjct 260 GAACTCTGTGTC-GAGGATCAACATTGG-TATGCTTGGTGTGAGGGAAGACACGAAACTA 317
Query 235 CATGAGGAGATGGAGAATG-ATAA-GCTAT-GTTTGAAGGAGGACACAAATCTATTTGAG 291
| ||||||| |||| || | | || ||| | |||||| ||||||||||||||||||||||
Sbjct 318 CTTGAGGAGGTGGA-AA-GTAAAATGCT-TGGTTTGAGGGAGGACACAAATCTATTTGAG 374
Query 292 GAGATGATGGAGTCGGCAAAAGATAGGATGATCCGTTCAGTGGAGGAACTCTTAGGAGGA 351
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GAGATGATGAAGTCGGCAAAAGATAGGATGATCCGTTCAGTGGAGGAACTCTTAGGAGGA 434
Query 352 GAATTCCCTTATCTTGGATCTTACGAAAACATCCACACTTGGCTCAGTGGCGTTCTTACT 411
||| |||| ||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 435 GAAAGCCCTAATCTTGGATCTTACGAAAATGTCCACACTTGGATTAGTGGCGTTCTTACT 494
Query 412 AGCTACATCACATGTATCGACGAAATTGGTGACGGTGCCTATAAACGTCGGGTCGAGCCA 471
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 495 AGCTACATCACATGTACCGACGAAATTGGTGAAGGTGCCTATAAACGTCGGGTTGAGCCA 554
Query 472 CAGCTTCAAGACCTCATTTCTAAGGCAA-AGGTAGCTTTGGCTCTTTTT-ATCTCCATTT 529
||||| | ||||||||||||| ||||| || |||||||||| | |||| ||||||||||
Sbjct 555 GAGCTTGAGGACCTCATTTCTAGGGCAAGAG-TAGCTTTGGC-CATTTTCATCTCCATTT 612
Query 530 CGCCGAGAGACAACACCGAACTTAACTCGGTGGTTCCCAATAGCCCGTCTTGGTTATCTC 589
| ||||||||| ||||||||||||| ||||||||| ||||| ||||||| |||||||| |
Sbjct 613 CACCGAGAGACGACACCGAACTTAAGTCGGTGGTTTCCAATGGCCCGTCGTGGTTATC-C 671
Query 590 AT-GTTGACAAGAAAGATCTATATCTCAAT-GCTGAGGCTCTAAAAAAGATTGCCGATGT 647
| |||||||| ||| |||||||||| || | |||| ||||||| ||||||||||||||
Sbjct 672 AACGTTGACAAAAAATATCTATATCTTTATCG-TGAGACTCTAAAGAAGATTGCCGATGT 730
Query 648 TGTGGTCGCGAAAGATGGGACCGGAAAGT-ACAACACAGTGAATGCGGCCATTGCAGCAG 706
|||||||||||| || |||| |||| || |||||||||||||||||||||||||||| |
Sbjct 731 TGTGGTCGCGAAGGACGGGAGTGGAA-GTTACAACACAGTGAATGCGGCCATTGCAGCGG 789
Query 707 CACCTCAACACAGCC-ACAAGAGATTCATCATCTATATAAAGACAGGCATTTATGATGAA 765
||||| || ||||| | ||||||||| |||||||||||||||||||| | |||||||||
Sbjct 790 CACCTAAATTCAGCCGA-AAGAGATTCGTCATCTATATAAAGACAGGCGTCTATGATGAA 848
Query 766 ATCGTCGCCATTGAGAATACGAAACCCAATTTAACTCTTATAGGTGATGGTCAAGATTCA 825
|||||| ||||| || || |||| ||||||||||||| || ||||| |||||||||||
Sbjct 849 ATCGTCAACATTGGGATTAAGAAAGCCAATTTAACTCTCATCGGTGACAGTCAAGATTCA 908
Query 826 ACCATCATCACGGGCAATTTAAGCGCTAGCAATGTTAGAA-GAACGTTCTACACTGCAAC 884
|| ||||||||||| ||||||||| |||| ||| || || || | ||||||||||||||
Sbjct 909 ACTATCATCACGGGTAATTTAAGCTATAGCTATGGTAAAACGA-CTTTCTACACTGCAAC 967
Query 885 TTTTGCTTCTAATGGTAAAGGATTCATCGGAGTAGACATGTGCTTCCGAAACACGGTCGG 944
| |||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 968 TGTTGCTTCTAATGGTGACGGATTCATCGGAATAGACATGTGCTTTCGAAACACGGTCGG 1027
Query 945 GCCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTCATTTACAG 1004
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1028 GCCGGCGAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCTATCATTCACCG 1087
Query 1005 ATGTCGTGTCGAGGGATATCAGGATGCCTTGTATCCTCACATAGACCGCCAGTTTTATAG 1064
|||| || ||||||| ||||||||||| |||||| |||||| | ||||||||||||||||
Sbjct 1088 ATGTTGTATCGAGGGGTATCAGGATGCGTTGTATTCTCACAAACACCGCCAGTTTTATAG 1147
Query 1065 GGAGTGCTTTATTACCGGTACTGTAGATTTCATTTGTGGAAACGCAGCGGCGGTATTTCA 1124
|||||||||||||||||| ||| ||||||| ||||||||||| || |||||||| || ||
Sbjct 1148 GGAGTGCTTTATTACCGGCACTATAGATTTTATTTGTGGAAATGCTGCGGCGGTCTTCCA 1207
Query 1125 ATTCTGCCAGATTGTAGCAAGACAGCCTAAT-ATGGGGCAAAGCAATTTCATAACCGCTC 1183
||||||||| ||||| |||||| | |||| | | |||||| |||||| | ||||||||||
Sbjct 1208 ATTCTGCCAAATTGTTGCAAGAAAACCTA-TGAGGGGGCATAGCAATGTGATAACCGCTC 1266
Query 1184 AATCACGCG-AGACTAAG-GACGACAAATCGGGCTTCTCAATTCA-AAACTGCAACATCA 1240
| ||||||| | | | || | |||||| || |||||||||||||| ||| ||||||||||
Sbjct 1267 AGTCACGCGTA-AGTGAGAG-CGACAACTCCGGCTTCTCAATTCAGAAA-TGCAACATCA 1323
Query 1241 CAGCAAGTTCGGATCTAGATAC----AG--CAACCGTAAAAACGTATCTTGGAAGGCCTT 1294
| |||||||| ||| ||||| | | ||||||| || || | |||||| | | |
Sbjct 1324 CTGCAAGTTCCGATATAGATCCTCTTAAATCAACCGTGAAGACATTTCTTGGTCGTTCAT 1383
Query 1295 GGAGGATATTTTCAACAGTCGCGGTTCTGCAGTCTTTCATCGGTGATTTAGTTGATCCCG 1354
|||||| || ||||||||| || ||||| || ||||||| ||||||||||||||||| |
Sbjct 1384 GGAGGAAATATTCAACAGTTGCAGTTCTACAATCTTTCAACGGTGATTTAGTTGATCATG 1443
Query 1355 CAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTGTCAACTCTCCACTACCGCGAATATC 1414
|||| |||||||||||| |||||||| |||||| ||||||||| ||||| | |||||||
Sbjct 1444 CAGGGTGGACTCCTTGGCAAGGAGAATTTGGTCTATCAACTCTCTACTACGGAGAATATC 1503
Query 1415 AAAATAGGGGTCCGGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTC-GGGCTTTAAAGTT 1473
|||| || ||||| |||||||||||||||| |||||| |||||| | ||| |||| ||||
Sbjct 1504 AAAACAGAGGTCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGG-TTTAGAGTT 1562
Query 1474 ATGAAAGATCCTAAACAGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGAAAC 1532
|| | ||||||||| ||||| || |||||||||| | ||||||| ||| ||| |||
Sbjct 1563 ATTACGGATCCTAAAGAGGCTGCAAAATTCACTGTTA-CCAAGCTATTACTTGGGGAAT- 1620
Query 1533 T-TGGCT-AAAAGAAAGTCGAATTCCATATAAAA 1564
| ||||| |||| || || || |||| || ||||
Sbjct 1621 TGTGGCTGAAAACAA-GTGGAGTTCCGTACAAAA 1653
> Ahg914026 jgi|Araly1|914026|Al_scaffold_0001_4280
Length=1548
Score = 1323 bits (716), Expect = 0.0
Identities = 1023/1169 (88%), Gaps = 30/1169 (3%)
Strand=Plus/Plus
Query 37 ATAACAATGGTGGTTATTGGTGTTAGCAAAGAATATTGTGATGACAAACACTCATGTCAA 96
||||||| ||| | || || ||| |||||| ||| ||| |||||||| |||||||||
Sbjct 106 ATAACAACGGT-G--ATCGGGGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAA 159
Query 97 AACT-TTTTGTTGGAGCTTAAGACAGCT-TCCTCGTCACTCTCGGAGATTAGACGTCGTG 154
|| | ||||||||||||| |||| | | |||||||||||||||||||| | | ||||||
Sbjct 160 AA-TATTTTGTTGGAGCTCAAGA-GGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTG 217
Query 155 ACTTATTGATCATCGTTTTGAAGAATTCCGTGCGGAAGATCGACATGGCTATGATTGGTG 214
| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 218 AGTTATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTG 277
Query 215 TGATGGAAGATACAAAACAACATGAGGAGATGGAGAATGATAAGCTAT-GTTTGAAGGAG 273
|||||||||| ||||||| || |||| |||||| |||||||| ||| | || ||||||||
Sbjct 278 TGATGGAAGACACAAAACTACTTGAGCAGATGGGGAATGATATGCT-TGGTGTGAAGGAG 336
Query 274 GACACAAATCTATTTGAGGAGATGATGGAGTCGGCAAAAGATAGGATGATCCGTTCAGTG 333
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 337 GACACAAATCTATTTGAAGAGATGATGGAGTCGGCAAAAAATAGGATGATCCGTTCAGTG 396
Query 334 GAGGAACTCTTAGGAGGAGAATTCCCTT-ATCTTGGATCTTACGAAAACATCCACACTTG 392
|||||||| |||||||||||| |||| ||||||| |||||||||||| ||||||||||
Sbjct 397 GAGGAACTTTTAGGAGGAGAA-AGCCTTAATCTTGGTTCTTACGAAAACGTCCACACTTG 455
Query 393 GCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGACGGTGCCTA 452
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 456 GCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTA 515
Query 453 TAAACGTCGGGTCGAGCCACAGCTTCAAGACCTCATTTCTAAGGCAA-AGGTAGCTTTGG 511
||||||||||||||||||| ||||| | ||||| ||||||| ||||| || |||||||||
Sbjct 516 TAAACGTCGGGTCGAGCCAGAGCTTGAGGACCTTATTTCTAGGGCAAGAG-TAGCTTTGG 574
Query 512 CTCTTTTTATCTCCATTTCGCCGAGAGACAACACCGAACTTAACTCGGTGGTTCCCAATA 571
| ||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct 575 CAATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGTTTCCAATG 634
Query 572 GCCCGTCTTGGTTATCTCAT-GTTGACAAGAAA-GATCTATATCTCAATGCTGAGGCTCT 629
|||||||||||||||| || |||||||| ||| | ||||||||||||| |||||| |||
Sbjct 635 GCCCGTCTTGGTTATC-CAACGTTGACAAAAAATG-TCTATATCTCAATCCTGAGGTTCT 692
Query 630 AAAAAAGATTGCCGATGTTGTGGTCGCGAAAG-ATGGGACCGGAAAGTACAACACAGTGA 688
||| |||| |||||||||||||||||| |||| |||||| |||| | |||||||||||||
Sbjct 693 AAAGAAGAATGCCGATGTTGTGGTCGC-AAAGGATGGGAGCGGACATTACAACACAGTGA 751
Query 689 ATGCGGCCATTGCAGCAGCACCTCAACACAGCC-ACAAGAGATTCATCATCTATATAAAG 747
|||||||||||||||| |||||| || ||| || | |||||||| ||||||||||||||
Sbjct 752 ATGCGGCCATTGCAGCGGCACCTGAATACAACCGA-AAGAGATTTGTCATCTATATAAAG 810
Query 748 ACAGGCATTTATGATGAAATCGTC-GCCATTGAGAATACGAAACCCAATTTAACTCTTAT 806
|| ||| | ||||||||||||||| || |||| || ||||||| ||||||||||||| ||
Sbjct 811 ACTGGCGTCTATGATGAAATCGTCCGC-ATTGGGATTACGAAAACCAATTTAACTCTCAT 869
Query 807 AGGTGATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGC-GCTAGCAATGTTAGAA 865
||||||||||||||||||||||||||||||||||||||||| | || | || ||||
Sbjct 870 CGGTGATGGTCAAGATTCAACCATCATCACGGGCAATTTAAGTTG-TAACGTTGGTAGAT 928
Query 866 GAACGTTCTACACTGCAACTTTTGCTTCTAATGGTAAAGGATTCATCGGAGTAGACATGT 925
|||||||||||| |||||| |||||||||||||| | || ||||||||| |||||||||
Sbjct 929 CAACGTTCTACACCGCAACTGTTGCTTCTAATGGTGATGGTTTCATCGGAATAGACATGT 988
Query 926 GCTTCCGAAACACGGTCGGGCCGGCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTG 985
||||| | ||||||| ||| ||| |||| |||| ||| ||||||||||||||||||||||
Sbjct 989 GCTTCAGGAACACGGCCGGACCGACAAAGGGACAAGCCGTTGCCCTCCGTGTGAGTGGTG 1048
Query 986 ATATGTCCGTCATTTACAGATGTCGTGTCGAGGGATATCAGGATGCCTTGTATCCTCAC- 1044
||||||||||||||||| |||||||| ||||||| ||||||||| | ||||||||||||
Sbjct 1049 ATATGTCCGTCATTTACCGATGTCGTATCGAGGGGTATCAGGATACGTTGTATCCTCACC 1108
Query 1045 ATAGACCGCCAGTTTTATAGGGAGTGCTTTATTACCGGTACTGTAGATTTCATTTGTGGA 1104
| | ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1109 A-ATACCGCCAATTTTATAGGGAGTGCTTTATTACCGGCACTGTAGATTTTATCTGTGGA 1167
Query 1105 AACGCAGCGGCGGTATTTCAATTCTGCCAGATTGTAGCAAGACAGCCTAATATGGGGCAA 1164
|| || | ||| || || ||||| ||||| |||||||||||||| || | | ||||||
Sbjct 1168 AAGGCCGTGGCTGTCTTCCAATTTTGCCAAATTGTAGCAAGACAACCGAGGAGGGGGCAG 1227
Query 1165 AGCAATTTCATAACCGCTCAATCACGCGA 1193
|||||| | ||||||||||| ||||||||
Sbjct 1228 AGCAATGTGATAACCGCTCAGTCACGCGA 1256
Score = 259 bits (140), Expect = 4e-68
Identities = 226/267 (85%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 1294 TGGAGGATA-TTTTCAACAGTCGCGGTTCTGCAGTCTTTCATCGGTGATTTAGTTGATCC 1352
||||||| | | ||||||||| | |||||| || ||||| ||||||||||||||||||||
Sbjct 1267 TGGAGGA-AGTATTCAACAGTTGTGGTTCTACAATCTTTTATCGGTGATTTAGTTGATCC 1325
Query 1353 CGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTGTCAACTCTCCACTACCGCGAATA 1412
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 1326 CGCAGGCTGGACTCCTTGGGAAGGAGAAACTGGTCTATCAACTCTCTACTACGGCGAATA 1385
Query 1413 TCAAAATAGGGGTCCGGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTC-GGGCTTTAAAG 1471
|||||| | ||| || |||||||||||||||| |||||| |||||| | ||| |||| ||
Sbjct 1386 TCAAAACATGGGCCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGACAGGG-TTTAGAG 1444
Query 1472 TTATGAAAGATCCTAAAC-AGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGA 1529
|| | | |||||||| | | || || |||||||||| ||| ||||| |||||||||||
Sbjct 1445 TTCTTACGGATCCTAA-CGAAGCCGCAAAATTCACTGTTAGC-AAGCTATTAGATGGAGA 1502
Query 1530 AACTTGGCTAAAAGAAAGTCGAATTCC 1556
| | ||| | |||| |||| || ||||
Sbjct 1503 ATCGTGGTTGAAAGCAAGTGGAGTTCC 1529
> Ahg914199 jgi|Araly1|914199|Al_scaffold_0001_4453
Length=1605
Score = 1007 bits (545), Expect = 0.0
Identities = 748/843 (89%), Gaps = 25/843 (3%)
Strand=Plus/Plus
Query 58 GTTAGCAAAGAATATTGTGATGACAAACACTCATGTCAAAACT-TTTTGTTGGAGCTTAA 116
||| |||||| ||| ||| |||||||| ||||||||||| | ||||||||||||| ||
Sbjct 10 GTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAAAA-TCTTTTGTTGGAGCTCAA 65
Query 117 GACAGCT-TCCTCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGATCATCGTTTTGA 175
|| | | |||||||||||||||||||| ||| || ||||||||||||||||| ||||||
Sbjct 66 GA-GGGTATCCTCGTCACTCTCGGAGATGAGATGTTGTGACTTATTGATCATCATTTTGA 124
Query 176 AGAATTCCGTGCGGAAGATCGACATGGCTATGATTGGTGTGATGGAAGATACAAAACAAC 235
||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 125 AGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTGTGATGGAAGACACAAAACTAC 184
Query 236 ATGAGGAGATGGAGAATGATAAGCTAT-GTTTGAAGGAGGACACAAATCTATTTGAGGAG 294
|||||| ||||||||||||| ||| | || ||||||||||||||||||||||||| |||
Sbjct 185 TTGAGGAAATGGAGAATGATATGCT-TGGTGTGAAGGAGGACACAAATCTATTTGAAGAG 243
Query 295 ATGATGGAGTCGGCAAAAGATAGGATGATCCGTTCAGTGGAGGAACTCTTAGGAGGAGAA 354
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 244 ATGATGGAGTCAGCAAAAGATAGGATGATCCGTTCAGTGGAAGAACTCTTAGGAGGAGAA 303
Query 355 TTCCCTT-ATCTTGGATCTTACGAAAACATCCACACTTGGCTCAGTGGCGTTCTTACTAG 413
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 304 -AGCCTTAATCTTGGATCTTACGAAAACATCCACACTTGGCTTAGTGGCGTTCTTACTAG 362
Query 414 CTACATCACATGTATCGACGAAATTGGTGACGGTGCCTATAAACGTCGGGTCGAGCCACA 473
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct 363 CTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTATAAACGTCGGGTCGAGCCAGA 422
Query 474 GCTTCAAGACC-TCATTTCTAAGGCAAAG-GTAGCTTTGGCTCTTTTTATCTCCATTTCG 531
|||| |||||| | | ||||||||| ||| ||||||||||| |||||||||||| |||
Sbjct 423 GCTTGAAGACCTTTA-TTCTAAGGC-AAGAGTAGCTTTGGCAATTTTTATCTCCACTTCT 480
Query 532 CCGAGAGACAACACCGAACTTAACTCGGTGGTTCCCAATAGCCCGTCTTGGTTATCTC-A 590
||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| | |
Sbjct 481 CCGAGAGACGACACCGAACTTAAGTCGGTGGTTCCCAATGGCCCGTCTTGGTTATC-CAA 539
Query 591 TGTTGACAAGAAAGATCTATATCTCAATGCTGAGGCTCTAAAAAAGATTGCCGATGTTGT 650
|||||||||||| |||||||||| ||| |||||| |||||| |||||||||||| ||||
Sbjct 540 CGTTGACAAGAAATATCTATATCTTAATCCTGAGGTTCTAAAGAAGATTGCCGATTTTGT 599
Query 651 GGTCGCGAAAGATGGGACCGGAAAGTACAACACAGTGAATGCGGCCATTGCAGCAGCACC 710
|||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 600 GGTCGCAAAAGATGGGAGCGGAAATTACAACACAGTGAATGCGGCCATTGCAGCGGCACC 659
Query 711 TCAACACAGCCA-CAAGAGATTCATCATCTATATAAAGACAGGCATTTATGATGAAATCG 769
| ||||| | | ||||||||| |||| ||||||||||||||| | |||||||||||||
Sbjct 660 TGAACAC-GGTAGAAAGAGATTCGTCATTTATATAAAGACAGGCGTCTATGATGAAATCG 718
Query 770 T-CGCCATTGAGAATACGAAACCCAATTTAACTCTTATAGGTGATGGTCAAGATTCAACC 828
| || ||||| || || |||| ||||||||||||| || |||||||||||||||||||||
Sbjct 719 TCCG-CATTGGGAGTATGAAAACCAATTTAACTCTCATCGGTGATGGTCAAGATTCAACC 777
Query 829 ATCATCACGGGCAATTTAAGC-GCTAGCAATGTTAGAAG-AACGTTCTACACTGCAACTT 886
||||||||||||||||||||| | || | ||| || || ||||||| | || ||||||
Sbjct 778 ATCATCACGGGCAATTTAAGCTG-TAACGATGGTA-AATCAACGTTCCAAACCGCAACTG 835
Query 887 TTG 889
|||
Sbjct 836 TTG 838
Score = 627 bits (339), Expect = 1e-178
Identities = 565/673 (84%), Gaps = 20/673 (3%)
Strand=Plus/Plus
Query 889 GCTTCTAATGGTAAAGGATTCATCGGAGTAGACATGTGCTTCCGAAACACGGTCGGGCCG 948
|||||||||||| | || ||||||||| |||||||||||||||| ||||||| ||| |||
Sbjct 913 GCTTCTAATGGTGATGGCTTCATCGGAATAGACATGTGCTTCCGGAACACGGCCGGACCG 972
Query 949 GCAAAAGGACCAGCTGTTGCCCTCCGTGTGAGTGGTGATATGTCCGTCATTTACAGATGT 1008
||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 973 GCAAAGGGACAAGCTGTTGCCCTCCGTGTGAGTGGTGATATATCCGTTATTTACCGATGC 1032
Query 1009 CGTGTCGAGGGATATCAGGATGCCTTGTATCCTCACATAGACCGCCAGTTTTATAGGGAG 1068
||| ||||||| ||||||||| | ||||||||||||| | ||||||| ||||||||||||
Sbjct 1033 CGTATCGAGGGGTATCAGGATACGTTGTATCCTCACAGACACCGCCAATTTTATAGGGAG 1092
Query 1069 TGCTTTATTACCGGTACTGTAGATTTCATTTGTGGAAACGCAGCGGCGGTATTTCAATTC 1128
| |||||||||||| ||||||||||| || ||||||||||| ||||| || || ||||||
Sbjct 1093 TTCTTTATTACCGGCACTGTAGATTTTATCTGTGGAAACGCCGCGGCCGTCTTCCAATTC 1152
Query 1129 TGCCAGATTGTAGCAAGACAGCCTAATATGGGGCAAAGCAATTTCATAACCGCTCAATCA 1188
||||| |||||||||||||| || | | |||||| |||||| | ||||||||||| |||
Sbjct 1153 TGCCAAATTGTAGCAAGACAACCGAGGAAGGGGCAGAGCAATGTGATAACCGCTCAGTCA 1212
Query 1189 CGCGAGACTAAGGACGACAAATCGGGCTTCTCAATTCAAAACTGCAACATCAC-AGCAAG 1247
||||| | | |||||||||| ||||||||||| |||||||| ||||| ||||| | ||||
Sbjct 1213 CGCGAAAGTGAGGACGACAACTCGGGCTTCTCCATTCAAAAATGCAATATCACTA-CAAG 1271
Query 1248 TTCGGATCTAGAT------ACAGCAACCGTAAAAACGTATCTTGGAAGGCCTTGGAGGAT 1301
| | ||||||||| | |||||| || || |||| | |||| | || |||| ||
Sbjct 1272 TCCTGATCTAGATCTGGTTAAAGCAACTGTGAAGACGTTTTTTGGTCGTCCATGGAAGA- 1330
Query 1302 ATT-TTCAACAGTCGCGGTTCTGCAGTCTTTCATCGGTGATTTAGTTGATCCCGCAGGCT 1360
| | ||||||||| | | |||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1331 AGTATTCAACAGTTGTGATTCTACAATCTTTTATCGGTGATTTAGTTGATCCCGCAGGCT 1390
Query 1361 GGACTCCTTGGGAAGGAGA-AACTGGTCTGTCAACTCTCCACTACCGCGAATATCAAAAT 1419
||||||||||||||||| | ||||||||| ||||||||| ||||| |||||||||||||
Sbjct 1391 GGACTCCTTGGGAAGGA-ACAACTGGTCTATCAACTCTCTACTACGGCGAATATCAAAAC 1449
Query 1420 AGGGGTCCGGGAGCTGTGACTAGCAGAAGGGTGAAGTGGTC-GGGCTTTAAAGTTATGAA 1478
| |||||| |||||||||||||||| |||||| |||||| ||| |||| |||| | |
Sbjct 1450 ATGGGTCCAGGAGCTGTGACTAGCAAAAGGGTAAAGTGGAGAGGG-TTTAGAGTTCTTAC 1508
Query 1479 AGATCCTAAAC-AGGCTACAGAATTCACTGT-AGCCAAGCTCTTAGATGGAGAAA-CTTG 1535
|||||||| | |||| || |||| ||||| ||| ||||| ||||||||| ||| | ||
Sbjct 1509 GGATCCTAA-CGAGGCCGCAAAATTAACTGTTAGC-AAGCTATTAGATGGA-AAATCGTG 1565
Query 1536 GCTAAAAGAAAGT 1548
||| |||| ||||
Sbjct 1566 GCTGAAAGCAAGT 1578
> Ahg337083 jgi|Araly1|337083|fgenesh1_pg.C_scaffold_1003648
Length=702
Score = 715 bits (387), Expect = 0.0
Identities = 528/594 (89%), Gaps = 18/594 (3%)
Strand=Plus/Plus
Query 37 ATAACAATGGTGGTTATTGGTGTTAGCAAAGAATATTGTGATGACAAACACTCATGTCAA 96
||||||| ||| | || || ||| |||||| ||| ||| |||||||| |||||||||
Sbjct 106 ATAACAACGGT-G--ATCGGAGTTTGCAAAGGATA---TGACGACAAACAGTCATGTCAA 159
Query 97 AACT-TTTTGTTGGAGCTTAAGACAGCT-TCCTCGTCACTCTCGGAGATTAGACGTCGTG 154
|| | ||||||||||||| |||| | | |||||||||||||||||||| | | ||||||
Sbjct 160 AA-TCTTTTGTTGGAGCTCAAGA-GGGTATCCTCGTCACTCTCGGAGATGAAATGTCGTG 217
Query 155 ACTTATTGATCATCGTTTTGAAGAATTCCGTGCGGAAGATCGACATGGCTATGATTGGTG 214
| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 218 AGTTATTGATCATCGTTTTAAAGAATTCCGTGTGGAGGATCGACATGGCTATGATTGGTG 277
Query 215 TGATGGAAGATACAAAACAACATGAGGAGATGGAGAATGATAAGCTAT-GTTTGAAGGAG 273
|||||||||| ||||||| || |||| ||||||||||||||| ||| | || ||||||||
Sbjct 278 TGATGGAAGACACAAAACTACTTGAGCAGATGGAGAATGATATGCT-TGGTGTGAAGGAG 336
Query 274 GACACAAATCTATTTGAGGAGATGATGGAGTCGGCAAAAGATAGGATGATCCGTTCAGTG 333
||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 337 GACACAAATCTATTTGAAGAGATGATGGACTCGGCAAAAAATAGGATGATCCGTTCAGTG 396
Query 334 GAGGAACTCTTAGGAGGAGAATTCCCTT-ATCTTGGATCTTACGAAAACATCCACACTTG 392
|||||||| |||||||||||| |||| ||||||| |||||||||||| ||||||||||
Sbjct 397 GAGGAACTTTTAGGAGGAGAA-AGCCTTAATCTTGGTTCTTACGAAAACGTCCACACTTG 455
Query 393 GCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGAAATTGGTGACGGTGCCTA 452
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 456 GCTCAGTGGCGTTCTTACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGCCTA 515
Query 453 TAAACGTCGGGTCGAGCCACAGCTTCAAGACCTCATTTCTAAGGCAA-AGGTAGCTTTGG 511
||||||||||||||||||| ||||| | ||||||||||||| ||||| || |||||||||
Sbjct 516 TAAACGTCGGGTCGAGCCAGAGCTTGAGGACCTCATTTCTAGGGCAAGAG-TAGCTTTGG 574
Query 512 CTCTTTTTATCTCCATTTCGCCGAGAGACAACACCGAACTTAACTCGGTGGTTCCCAATA 571
| ||||||| |||||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct 575 CAATTTTTATTTCCATTTCGCCGAGAGACGACACCGAACTTAAGTCGGTGGTTTCCAATG 634
Query 572 GCCCGTCTTGGTTATCTCAT-GTTGACAAGAAAGATCTATATCTCAATGCTGAG 624
|||||||||||||||| || |||||||| ||| |||||||||||||| |||||
Sbjct 635 GCCCGTCTTGGTTATC-CAAAGTTGACAAAAAATATCTATATCTCAATCCTGAG 687
> Ahg907931 jgi|Araly1|907931|Al_scaffold_0002_1012
Length=1095
Score = 187 bits (101), Expect = 2e-46
Identities = 125/137 (91%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 357 CCCTTATCTTGGATCTTACGAAAACATCCACACTTGGCTCAGTGGCGTTCTTACTAGCTA 416
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 228 CCCTAATCTTGGATCTTACGAAAACGTCCACACTTGGCTCAGTGGTGTTCTTACTAGCTA 287
Query 417 CATCACATGTATCGACGAAATTGGTGACGGTGCCTATAAACGTCGGGTCGAGCCACAGCT 476
||||||||||||||||| ||||||||| |||| |||||||||||||||| | ||| ||||
Sbjct 288 CATCACATGTATCGACGGAATTGGTGAAGGTGTCTATAAACGTCGGGTCAACCCAGAGCT 347
Query 477 TCAAGACCTCATTTCTA 493
| | || ||||||||||
Sbjct 348 TGAGGAACTCATTTCTA 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5