BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G03965.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490074 jgi|Araly1|490074|fgenesh2_kg.6__3208__AT4G03965.1 1203 0.0
Ahg492641 jgi|Araly1|492641|fgenesh2_kg.7__2074__AT4G22250.1 255 3e-67
> Ahg490074 jgi|Araly1|490074|fgenesh2_kg.6__3208__AT4G03965.1
Length=883
Score = 1203 bits (651), Expect = 0.0
Identities = 832/912 (91%), Gaps = 41/912 (4%)
Strand=Plus/Plus
Query 5 CACACTCTCTTCAATGGCGGAA-ATTTTCTTCAGAATCCTTTCTTGTTTATTTTTCTCGT 63
||| |||||||||||||||||| ||||| |||||||||| ||||| |||||| |||||||
Sbjct 1 CACTCTCTCTTCAATGGCGGAATATTTT-TTCAGAATCCATTCTTATTTATTCTTCTCGT 59
Query 64 AATCCTCTCTTCTTTTAA-AGCGTCTGTAGCTGAGTCGACAATGAGTCAACTCGGTGTTG 122
| |||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 60 AGTCCTCTCTTC-TTTAACA-CGTCTGTAGCTGAGTCGACAATGAGTCAACTCGATGTTG 117
Query 123 AAACTAGTCAAGCCCAGCCGGAGACGCCACAGTCAACGACATTTCTCGATTTGCTCCGAC 182
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 118 AAACTAGTCAAGCCCAGCCGGAGACGTCACAGTCAACGACATTCCTCGATTTGCTCCGAC 177
Query 183 TCCAAATGGAC---GGTCTCGATCGAAGTAGGAGAAGGAAACGAACTCTTAAAGAACGGC 239
| ||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 178 TTCAAATGGACGGTGGTGTCGATCGAACTAGGAGAAGGAAACGAACACTTAAAGAACGGT 237
Query 240 TAGGATTCAAACGAATTGGATGCTGTGGACCAACTTGGGGTCTCCGGTTAA-CA--AGTA 296
||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||
Sbjct 238 TAGGATTCAAACGAATTGGTTGCTGTGGACCAACATGGGGTCTCCGGTTAACCAGTAGTA 297
Query 297 ACACTGGCGAAGACGACGACGAGCCATTTGAAAACCGGCTT-GTTTCCGGGTCGGATCAT 355
||||| |||||| | |||||| |||| || ||||| | || ||||||||||||||||||
Sbjct 298 ACACTCGCGAAG--G-CGACGAACCATATG-AAACCCGATTCGTTTCCGGGTCGGATCAT 353
Query 356 GTAACGGGTCCGTTAAATCAAGGTATGAATCTCGCAACGGCGTTAGCAGCGGAGAGAAAT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTAACGGGTCCGTTAAATCAAGGTATGAATCTCGCAACGGCGTTAGCAGCGGAGAGAAAT 413
Query 416 TACCGAACGGAGGAAACGGAAGCATCAGGGAGTTTAACGCCGTTAAAAGTGTCGTTAATG 475
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 414 TACCGAACGGAGGAAACGGAAGCATCAGGGAGTTTAACGCCGTTAAGAGTATCGTTAATG 473
Query 476 AGATTGCTCGAAGAAACGGCGGAGAGAGTCGTCGTTGAAGAGAATGAAACGGAGAGAGTA 535
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| || ||
Sbjct 474 AGATTGCTTGAAGAAACGGCGGAGAGAGTCGTCGTTGAAGGGAAGGAAACGGAGGGATTA 533
Query 536 ACGGCGTCGGCGTCGTCGACGGTTAGAGGAGTTAATAATGATTCGGTGTGTTGCGTGTGC 595
||||||||| ||||||| | | |||||||||||||||||||||
Sbjct 534 ACGGCGTCG---TCGTCGA-----A------T-------GATTCGGTGTGTTGCGTGTGC 572
Query 596 ATGGGAAGGAAGAAAGGAGCAGCGTTTATCCCATGTGGACATACTTTTTGCAGAGTGTGT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 ATGGGAAGGAAGAAAGGAGCAGCGTTTATCCCATGTGGACATACTTTTTGCAGAGTGTGT 632
Query 656 TCTCGAGAGGTGTGGCTTAATCGAGGATCGTGTCCTCTTTGTAACCGTCCGATCATCGAG 715
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 633 TCTCGAGAGGTGTGGCTTAATCGAGGATCGTGTCCCCTTTGTAACCGTCCGATCATCGAG 692
Query 716 ATCCTCGACATTTATTGATTACTGAATCCTACGGCTCAAATTAGTCCGGTTGCACGTGAG 775
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 693 ATCCTCGACATTTATTGATTATTGAATCCTACGGCTCATATTAGTCCGGTTGCACGTGAC 752
Query 776 TTCAGTGAGGTGGTG-TGTGCCTAGAGATTCACGAG--TGTTACGTACGAAATTTAATCA 832
||||||||||| || |||||||||||||||||||| |||||| || |||||||||| |
Sbjct 753 TTCAGTGAGGTACTGGTGTGCCTAGAGATTCACGAGAGTGTTACATATGAAATTTAATTA 812
Query 833 CGGTGTCTATGTTTTCTCTTATTGGAATTTGGAGTATCATTCATTATCAGAGATCAAAAG 892
|||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 813 CGGTGTCTATGTTT-CTCTTATTGGAAATTGGAGTATTATTCATTATTAGAGATCAAAAG 871
Query 893 TAATTCAAGAtt 904
||||||||||||
Sbjct 872 TAATTCAAGATT 883
> Ahg492641 jgi|Araly1|492641|fgenesh2_kg.7__2074__AT4G22250.1
Length=940
Score = 255 bits (138), Expect = 3e-67
Identities = 333/422 (79%), Gaps = 33/422 (8%)
Strand=Plus/Plus
Query 377 GGTATGAATCTCGCAACGGCGTTAGCA-GCGGAGAGAAATTACCGAACGGAGGAA---AC 432
|||||||||||||| || ||||||| | |||||||| || || | | ||| ||| ||
Sbjct 419 GGTATGAATCTCGCGACTGCGTTAG-AGGCGGAGAGGTATAACAG-A-GGA-GAATCGAC 474
Query 433 GGAAGCATCAGGGAG-TTTAACGCCGTTAAAAGTGTCGTTAATGAGATTGCTCGAAGAAA 491
||| || ||| || | | |||||| | ||| ||||| ||||||||| | ||||| |
Sbjct 475 GGAGGC-GGAGGTAGATATGACGCCGAGGAGAGTTTCGTTGATGAGATTGTTGGAAGAGA 533
Query 492 CGGCGGAGAGAGTCGTCGTTGAAGA--G-AATGAAACGGAGAGAGTAACGGCGTCGGCGT 548
||||||||||| |||| | |||||| | || |||||||||| | |||||||||| |
Sbjct 534 CGGCGGAGAGAATCGTTGATGAAGACGGAAAAGAAACGGAGATATTAACGGCGTC--TAT 591
Query 549 CGTCGACGGTTAGA-GGAGTTAATAATGATTCGGTGTGTTGCGTGTGCATGGGAAGGAAG 607
| ||| |||| | || | |||||||||||||||||||||||| |||||||| |||
Sbjct 592 TG-GGAC-GTTA-ACGG-G----TAATGATTCGGTGTGTTGCGTGTGTATGGGAAGAAAG 643
Query 608 AAAGGAGCAGCGTTTATCCCATGTGGACATACTTTTTGCAGAGTGTGTTCTCGAGAGGTG 667
||||| ||||||||||| |||||||| |||||||||||||||||||| ||| |||| ||
Sbjct 644 AAAGGTGCAGCGTTTATTCCATGTGGTCATACTTTTTGCAGAGTGTGCTCTAGAGAATTG 703
Query 668 TGGCTTAATCGAGGATCGTGTCCTCTTTGTAACCGTCCGATCATCGAGATCCTCGACAT- 726
||||| || || |||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 704 TGGCTGAACCGTGGATCGTGTCCTCTTTGTAACCGTCCGATCATTGAGATACTAGATATC 763
Query 727 TTATTGATTACTGAATCCTACGGCTCAAATTAGTCCG-GTTGCACGTGAGTTCAGTGAGG 785
|| |||| || || || |||||| ||| ||||| | | || |||||| |||||||
Sbjct 764 TT-TTGAAAAC-GA-TCGGACGGCT-AAA--AGTCCTCGATCCAAGTGAGTA-AGTGAGG 816
Query 786 TG 787
||
Sbjct 817 TG 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5